BAC Information

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BAC

Clone NameB6Ng01-069H16
Chromosome8 (Build37)
Map Location 110,591,226 - 110,711,926
singlet/doubletdoublet
Overlap genenone
Upstream geneTerf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
Downstream geneAtbf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069H16.bB6Ng01-069H16.g
ACCDH887778DH887779
length1,0881,061
definitionDH887778|Mus musculus domesticus DNA, BAC clone: B6Ng01-069H16, 5' end.DH887779|Mus musculus domesticus DNA, BAC clone: B6Ng01-069H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,591,226 - 110,592,337)(110,710,851 - 110,711,926)
sequence
gaattcactcaggaggccaggctagctggtctccgagccctagctctgca
tctccccagcacggggagatgcttacaaatgagcatgtactaccatagcc
agcttttaaaatgtggatcccgggagccagaatcaggtgcttgtgctact
gaggcaaacacgcgactggctgacccgtctcccagcctctttgttcttaa
aatatttatttaaaataaaatatatgctaagatatgtatatgagtatgtc
cgtatgcactgccctctatatacacacatgcatagtcatacatggattga
agtctcgagtcctatggggacaaggattggacacgtgaaagctgctgcac
aatgttgcccactgactgggggtgttgattccatgtttttaaaagcacag
tgcattatgttgcttacttaaaacctttcaatggttttccattaaatagt
gccttttctgctcaaagctctctaatctattttactgctatatttgtata
atttgttgttgttcaaaaccttatcggcactgtcaagtacagcgtaggca
catagccctccttgtcattaaatgcccctccggacttttctgccaatgaa
tgggtggttttgcagctctagattcgaagcccccattccagtggcctttg
ggtttcttccagaagttgtccacacaatttgaaaaatggttttgagtcat
gcataatttctggaaacccaggtctgagttttcccccccgccagagtccc
cccaccccctatccccgcttttgattaaatggatccaaaaatgttgcctt
tctctcaagttttcaaatggatgcgactcattgcactcttttaggattac
cgcccaggccagtcaacctcgagcccccacccccacccccatttttggat
ttcaagctatgtgatggtttcttggtctcttaggtgttatttagtcaatt
atgtgcatttatcgcctgtgtcttcctcatattcactccctttgaatgat
ttctttctcctcgaaatccacaagctcgaatacccctaattgctgagcat
tcagtactggtctaagcgggtgagggctgactcttgga
gaattcaatgaattaataaacaggaaagagaagattaaagctgaaaagaa
gagacatttaggatatttaaggaccagctattgtccatgaagctcccagg
attttatttcttctgagaagggaaaagtgtgagctgtaaattctctgaaa
ttaaagattagtagaaactgaagtggaagatttaattttgtgagaatttg
gtaaagcgaaaaaaatcaggaactgaattttcacttatatatgtttttta
aagaattgtttacatttgtttatgtattggaggaggcgcatgccatggtt
tgtgagggctcaaaggacaccacaagggagttggctgcctcctaccacat
aggtaccaacaaggattgagctcaggggccaggattggcagcaagtgcct
ttacctgatgagccatcttactaggcctacatttatatttgtgaccaatt
acaactaaaatctagattttagaagatgatggttgttcttcaagtctaca
ggaatccaaatctatgtttccccaactgcctatgagaggacagcaaaatc
tgccgtcactatggagaccatgctgtggtccatgtggggcaacaggcttt
ttcctatgctaatgctccaaagagtgacaaacattgggataaaacagtaa
agaagaaaaccaaccccatctctaggagcaagcaagatgcttcctatttt
tgctttttctccccttgggaattctaagactcaactagcaaactggtata
actgtgtagccattttttgcttctttgtgggttcttctttcttccaccct
tctccacccctttccttccatcctttcaactccctaacactagataagag
aaacaaaaaaggagaaaaaaggaaagagatcccttgaataaagtcagggg
tgcgggtggggagtcatctatcattagactacttcttgctgattaggggc
attagatcctggggcaattttgatcttcggtgtcagatatctatttctct
tgttgttctctagcacatgactacttaacactgtgacacagcacaacaca
gccaataacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_110591226_110592337
seq2: B6Ng01-069H16.b_47_1134

seq1  GAATTCACTCAGGAGGCCAGGCTAGCTGGTCTCCGAGCCCTAGCTCTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCAGGAGGCCAGGCTAGCTGGTCTCCGAGCCCTAGCTCTGCA  50

seq1  TCTCCCCAGCACGGGGAGATGCTTACAAATGAGCATGTACTACCATAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCAGCACGGGGAGATGCTTACAAATGAGCATGTACTACCATAGCC  100

seq1  AGCTTTTAAAATGTGGATCCCGGGAGCCAGAATCAGGTGCTTGTGCTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTAAAATGTGGATCCCGGGAGCCAGAATCAGGTGCTTGTGCTACT  150

seq1  GAGGCAAACACGCGACTGGCTGACCCGTCTCCCAGCCTCTTTGTTCTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAACACGCGACTGGCTGACCCGTCTCCCAGCCTCTTTGTTCTTAA  200

seq1  AATATTTATTTAAAATAAAATATATGCTAAGATATGTATATGAGTATGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTATTTAAAATAAAATATATGCTAAGATATGTATATGAGTATGTC  250

seq1  CGTATGCACTGCCCTCTATATACACACATGCATAGTCATACATGGATTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATGCACTGCCCTCTATATACACACATGCATAGTCATACATGGATTGA  300

seq1  AGTCTCGAGTCCTATGGGGACAAGGATTGGACACGTGAAAGCTGCTGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCGAGTCCTATGGGGACAAGGATTGGACACGTGAAAGCTGCTGCAC  350

seq1  AATGTTGCCCACTGACTGGGGGTGTTGATTCCATGTTTTTAAAAGCACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGCCCACTGACTGGGGGTGTTGATTCCATGTTTTTAAAAGCACAG  400

seq1  TGCATTATGTTGCTTACTTAAAACCTTTCAATGGTTTTCCATTAAATAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTATGTTGCTTACTTAAAACCTTTCAATGGTTTTCCATTAAATAGT  450

seq1  GCCTTTTCTGCTCAAAGCTCTCTAATCTATTTTACTGCTATATTTGTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTCTGCTCAAAGCTCTCTAATCTATTTTACTGCTATATTTGTATA  500

seq1  ATTTGTTGTTGTTCAAAACCTTATCGGCACTGTCAAGTACAGCGTAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTGTTGTTCAAAACCTTATCGGCACTGTCAAGTACAGCGTAGGCA  550

seq1  CATAGCCCTCCTTGTCATTAAATGCCCCTCCGGACTTTTCTGCCAATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCCTCCTTGTCATTAAATGCCCCTCCGGACTTTTCTGCCAATGAA  600

seq1  TGGGTGGTTTTGCAGCTCTAGATTCGAAGCCCCCATTCCAGTGGCCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGTTTTGCAGCTCTAGATTCGAAGCCCCCATTCCAGTGGCCTTTG  650

seq1  GGTTTCTTCCAGAAGTTGTCCACACAATTTGAAAAATGGTTTTGAGTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTTCCAGAAGTTGTCCACACAATTTGAAAAATGGTTTTGAGTCAT  700

seq1  GCATAATTTCTGGAAACCCAGGTCTGAGTTTTCCCCCCCGCCAGAGTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAATTTCTGGAAACCCAGGTCTGAGTTTTCCCCCCCGCCAGAGTCCC  750

seq1  CCCACCCCCTATCCCCGC-TTTGATTAAATGGATCC-AAAATGTTGCCTT  798
      |||||||||||||||||| ||||||||||||||||| |||||||||||||
seq2  CCCACCCCCTATCCCCGCTTTTGATTAAATGGATCCAAAAATGTTGCCTT  800

seq1  TCTCTCAAGTTTTCAAATGGATGCGACTCAATGCACTC-TTTAGGATTAC  847
      |||||||||||||||||||||||||||||| ||||||| |||||||||||
seq2  TCTCTCAAGTTTTCAAATGGATGCGACTCATTGCACTCTTTTAGGATTAC  850

seq1  CGCCCAGGCCAGTCAACCTCGAGCCCCCCACCCCCACCCCCCATTTTGGA  897
      ||||||||||||||||||||||| |||||||||||||||||  |||||||
seq2  CGCCCAGGCCAGTCAACCTCGAG-CCCCCACCCCCACCCCCATTTTTGGA  899

seq1  TTCTCAAGCTATGTAGATGGTTATCTTGGTCCCTTAGGTTGTTATTTAGT  947
      || ||||||||||| ||||||| |||||||| |||||| |||||||||||
seq2  TT-TCAAGCTATGT-GATGGTT-TCTTGGTCTCTTAGG-TGTTATTTAGT  945

seq1  CAAATTATGTGCATTTTATCGCCTGTGTCTTTCCTCATATTTCACTCCCT  997
      | ||||||||||| ||||||||||||||| ||||||||| ||||||||||
seq2  C-AATTATGTGCA-TTTATCGCCTGTGTC-TTCCTCATA-TTCACTCCCT  991

seq1  TTGATTTGTTTTTCTTTTCTCTTCGAAATTCCCACCGAGGCATCGCATTA  1047
      |||| |  |||    |||||| |||||||  ||||  | || ||| | ||
seq2  TTGAATGATTT---CTTTCTCCTCGAAAT--CCAC--AAGC-TCG-AATA  1032

seq1  CCCCTAATTGCCTGCAGCATTCCAGTACTGGTCTCAGTGCCGAGGCAGAG  1097
      |||||||||| ||| |||||| |||||||||||| |     | ||  || 
seq2  CCCCTAATTG-CTG-AGCATT-CAGTACTGGTCTAA-----GCGGGTGA-  1073

seq1  GGGCTGACTCTTGGA  1112
      |||||||||||||||
seq2  GGGCTGACTCTTGGA  1088

seq1: chr8_110710851_110711926
seq2: B6Ng01-069H16.g_68_1128 (reverse)

seq1  TGGTTATTGGCTGGTTGTTGGTTGCTGTTGGTCACAGTTTGTTAAGTAGT  50
      |||||||||||||  |||||  ||||||  |||||||  |||||||||||
seq2  TGGTTATTGGCTG--TGTTG--TGCTGT--GTCACAG--TGTTAAGTAGT  42

seq1  CATGTGCTAAGAAGAAACAACAAGGAGAAATTAGATATTCTGACACCGAA  100
      |||||||| |||   |||||||| |||||| |||||| ||||||||||||
seq2  CATGTGCT-AGA--GAACAACAA-GAGAAA-TAGATA-TCTGACACCGAA  86

seq1  GATCAAAATTGCCCCAAGGATCTAATGCCCCTAATCAGCAAGAAGTAGTC  150
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GATCAAAATTGCCCC-AGGATCTAATGCCCCTAATCAGCAAGAAGTAGTC  135

seq1  TAATGATAAGATGACTCCCCACCCGCACCCCTGACTTTATTC-AGGGATC  199
      ||||||| |||||||||||||||||||||||||||||||||| |||||||
seq2  TAATGAT-AGATGACTCCCCACCCGCACCCCTGACTTTATTCAAGGGATC  184

seq1  TCTTTCCTTTTTTCTCCTTTTTTGTTTCTCTTATCTAGTGTTAGGGAGTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTTTTTTCTCCTTTTTTGTTTCTCTTATCTAGTGTTAGGGAGTT  234

seq1  GAAAGGATGGAAGGAAAGGGGTGGAGAAGGGTGGAAGAAAGAAGAACCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGATGGAAGGAAAGGGGTGGAGAAGGGTGGAAGAAAGAAGAACCCA  284

seq1  CAAAGAAGCAAAAAATGGCTACACAGTTATACCAGTTTGCTAGTTGAGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGCAAAAAATGGCTACACAGTTATACCAGTTTGCTAGTTGAGTC  334

seq1  TTAGAATTCCCAAGGGGAGAAAAAGCAAAAATAGGAAGCATCTTGCTTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATTCCCAAGGGGAGAAAAAGCAAAAATAGGAAGCATCTTGCTTGC  384

seq1  TCCTAGAGATGGGGTTGGTTTTCTTCTTTACTGTTTTATCCCAATGTTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAGATGGGGTTGGTTTTCTTCTTTACTGTTTTATCCCAATGTTTG  434

seq1  TCACTCTTTGGAGCATTAGCATAGGAAAAAGCCTGTTGCCCCACATGGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTTTGGAGCATTAGCATAGGAAAAAGCCTGTTGCCCCACATGGAC  484

seq1  CACAGCATGGTCTCCATAGTGACGGCAGATTTTGCTGTCCTCTCATAGGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCATGGTCTCCATAGTGACGGCAGATTTTGCTGTCCTCTCATAGGC  534

seq1  AGTTGGGGAAACATAGATTTGGATTCCTGTAGACTTGAAGAACAACCATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGGAAACATAGATTTGGATTCCTGTAGACTTGAAGAACAACCATC  584

seq1  ATCTTCTAAAATCTAGATTTTAGTTGTAATTGGTCACAAATATAAATGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTAAAATCTAGATTTTAGTTGTAATTGGTCACAAATATAAATGTA  634

seq1  GGCCTAGTAAGATGGCTCATCAGGTAAAGGCACTTGCTGCCAATCCTGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGTAAGATGGCTCATCAGGTAAAGGCACTTGCTGCCAATCCTGGC  684

seq1  CCCTGAGCTCAATCCTTGTTGGTACCTATGTGGTAGGAGGCAGCCAACTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGCTCAATCCTTGTTGGTACCTATGTGGTAGGAGGCAGCCAACTC  734

seq1  CCTTGTGGTGTCCTTTGAGCCCTCACAAACCATGGCATGCGCCTCCTCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGGTGTCCTTTGAGCCCTCACAAACCATGGCATGCGCCTCCTCCA  784

seq1  ATACATAAACAAATGTAAACAATTCTTTAAAAAACATATATAAGTGAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAAACAAATGTAAACAATTCTTTAAAAAACATATATAAGTGAAAA  834

seq1  TTCAGTTCCTGATTTTTTTCGCTTTACCAAATTCTCACAAAATTAAATCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCCTGATTTTTTTCGCTTTACCAAATTCTCACAAAATTAAATCT  884

seq1  TCCACTTCAGTTTCTACTAATCTTTAATTTCAGAGAATTTACAGCTCACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCAGTTTCTACTAATCTTTAATTTCAGAGAATTTACAGCTCACA  934

seq1  CTTTTCCCTTCTCAGAAGAAATAAAATCCTGGGAGCTTCATGGACAATAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCCTTCTCAGAAGAAATAAAATCCTGGGAGCTTCATGGACAATAG  984

seq1  CTGGTCCTTAAATATCCTAAATGTCTCTTCTTTTCAGCTTTAATCTTCTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCTTAAATATCCTAAATGTCTCTTCTTTTCAGCTTTAATCTTCTC  1034

seq1  TTTCCTGTTTATTAATTCATTGAATTC  1076
      |||||||||||||||||||||||||||
seq2  TTTCCTGTTTATTAATTCATTGAATTC  1061