BAC Information

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BAC

Clone NameB6Ng01-070C19
Chromosome8 (Build37)
Map Location 108,713,912 - 108,922,027
singlet/doubletdoublet
Overlap geneSlc7a6, Slc7a6os, Prmt7, Smpd3
Upstream geneCbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3
Downstream geneZfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070C19.bB6Ng01-070C19.g
ACCDH888257DH888258
length223995
definitionDH888257|Mus musculus domesticus DNA, BAC clone: B6Ng01-070C19, 5' end.DH888258|Mus musculus domesticus DNA, BAC clone: B6Ng01-070C19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,921,803 - 108,922,027)(108,713,912 - 108,714,921)
sequence
cttccagagggattctcttattttagagtcaagatgagtcatgaagacat
tcattgacagaccagggcttctgggcattaccaccccatgctaggcatga
tgatgcatgcttgttctttcagtacaaaggaggctgaggcaggaggatca
cgagttaaaggccaggccaggtctgtaagaaggtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtaagag
gaattcttgaaacttgggtcactcacagtagtcatccaggactgtagatt
actgcctcccggttgtagtctgtagtcaccaagcggtgagtggacacctg
actgtcctggagatgggcagtagggaaggggtgcatggtcgttttacagt
atttattgtttatctggacttgtgttaaacattatattgaggaatctccc
aaaaaaagtcagctctaaaaaagtgtcagaatgttgtaaaatggacattg
tctttcctatgttggcatttctttttttttttttttttttttttttgttt
tttcgagacagggtttctctgtatagccctggctgtcctgtaactcactt
tgtagaccaggctggcctcgaactcaaaaatctgcctgcctttgcctccc
aagtgctgggattaaagaaaggtgtgcaactactactgccccactttttt
tctttttttgttttttaaagatttatttatttatttatttatttattata
tgtaagtacgctgtagctgtcttcagacgcaccagaagagggcatcagat
ctcattacgggtggttgtgagccaccacgtggttgctgggatttgaactt
cggaccttcggaagagcagtcgaagagcagtcgggtgcacttacccactg
agccatctcaccagcccccccccctttttttttcttttcttttcttttta
acttttgctgaggatggaaccagaattttatgtgtgctatattagactct
accactcagccacatccctagtccttttaattaaaatttttaaaactttt
ttaaagataatgtcttgaactatattttgggctggcctgtatttagcatg
ttgtccagtagctgtgattaagacatgtaccaccatatccagctacttat
ggctctgaaagttttcattctgggatcagagagactgataaggaactggt
gggctttcaggctatcctaaagctttgacaaggcatctgctcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108921803_108922027
seq2: B6Ng01-070C19.b_50_272 (reverse)

seq1  CTCTTACACACACACACACACACACACACACACACACACACACCTTCTTA  50
      |||||  |||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTT--ACACACACACACACACACACACACACACACACACACCTTCTTA  48

seq1  CAGACCTGGCCTGGCCTTTAACTCGTGATCCTCCTGCCTCAGCCTCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTGGCCTGGCCTTTAACTCGTGATCCTCCTGCCTCAGCCTCCTTT  98

seq1  GTACTGAAAGAACAAGCATGCATCATCATGCCTAGCATGGGGTGGTAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGAAAGAACAAGCATGCATCATCATGCCTAGCATGGGGTGGTAATG  148

seq1  CCCAGAAGCCCTGGTCTGTCAATGAATGTCTTCATGACTCATCTTGACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGCCCTGGTCTGTCAATGAATGTCTTCATGACTCATCTTGACTC  198

seq1  TAAAATAAGAGAATCCCTCTGGAAG  225
      |||||||||||||||||||||||||
seq2  TAAAATAAGAGAATCCCTCTGGAAG  223

seq1: chr8_108713912_108714921
seq2: B6Ng01-070C19.g_66_1060

seq1  GAATTCTTGAAACTTGGGTCACTCACAGTAGTCATCCAGGACTGTAGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAAACTTGGGTCACTCACAGTAGTCATCCAGGACTGTAGATT  50

seq1  ACTGCCTCCCGGTTGTAGTCTGTAGTCACCAAGCGGTGAGTGGACACCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTCCCGGTTGTAGTCTGTAGTCACCAAGCGGTGAGTGGACACCTG  100

seq1  ACTGTCCTGGAGATGGGCAGTAGGGAAGGGGTGCATGGTCGTTTTACAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCTGGAGATGGGCAGTAGGGAAGGGGTGCATGGTCGTTTTACAGT  150

seq1  ATTTATTGTTTATCTGGACTTGTGTTAAACATTATATTGAGGAATCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTGTTTATCTGGACTTGTGTTAAACATTATATTGAGGAATCTCCC  200

seq1  AAAAAAAGTCAGCTCTAAAAAAGTGTCAGAATGTTGTAAAATGGACATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGTCAGCTCTAAAAAAGTGTCAGAATGTTGTAAAATGGACATTG  250

seq1  TCTTTCCTATGTTGGCATTTCTTTTTTTTTTTTTTTTTTTTTTTTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTATGTTGGCATTTCTTTTTTTTTTTTTTTTTTTTTTTTTGTTT  300

seq1  TTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGTAACTCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGTAACTCACTT  350

seq1  TGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTTTGCCTCCC  400
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGTAGACCAGGCTGGCCTCGAACTCAAAAATCTGCCTGCCTTTGCCTCCC  400

seq1  AAGTGCTGGGATTAAAGAAAGGTGTGCAACTACTACTGCCCCACTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGGGATTAAAGAAAGGTGTGCAACTACTACTGCCCCACTTTTTT  450

seq1  TCTTTTTTTGTTTTTTAAAGATTTATTTATTTATTTATTTATTTATTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTGTTTTTTAAAGATTTATTTATTTATTTATTTATTTATTATA  500

seq1  TGTAAGTACGCTGTAGCTGTCTTCAGACGCACCAGAAGAGGGCATCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTACGCTGTAGCTGTCTTCAGACGCACCAGAAGAGGGCATCAGAT  550

seq1  CTCATTACGGGTGGTTGTGAGCCACCACGTGGTTGCTGGGATTTGAACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTACGGGTGGTTGTGAGCCACCACGTGGTTGCTGGGATTTGAACTT  600

seq1  CGGACCTTCGGAAGAGCAGTCGAAGAGCAGTCGGGTGCACTTACCCACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACCTTCGGAAGAGCAGTCGAAGAGCAGTCGGGTGCACTTACCCACTG  650

seq1  AGCCATCTCACCAGCCCCCCCCCCTTTTTTTTTCTTTTCTTTTCTTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTCACCAGCCCCCCCCCCTTTTTTTTTCTTTTCTTTTCTTTTTA  700

seq1  ACTTTTGCTGAGGATGGAACCAGAATTTTATGTGTGCTATATTAGACTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGCTGAGGATGGAACCAGAATTTTATGTGTGCTATATTAGACTCT  750

seq1  ACCACTCAGCCACATCCCTAGTCCTTTTAATTTAAAATTTTTAAAAACTT  800
      |||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  ACCACTCAGCCACATCCCTAGTCCTTTTAA-TTAAAATTTTT-AAAACTT  798

seq1  TTTTAAAGATAATGTCTTGAACTATATTTTGGGCTGGCCTGTAATTTAGC  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTTAAAGATAATGTCTTGAACTATATTTTGGGCTGGCCTGT-ATTTAGC  847

seq1  ATGTTGTCCAGTAGCTGTGATTAAAGACATGTACCACCATATCCAGCTAC  900
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATGTTGTCCAGTAGCTGTGATT-AAGACATGTACCACCATATCCAGCTAC  896

seq1  TTATTGGCTCTTGAAAGGTTTTCATTCTGGGATCAGAGCAGACTGATCAG  950
      ||| |||||| ||||| ||||||||||||||||||||| |||||||| ||
seq2  TTA-TGGCTC-TGAAA-GTTTTCATTCTGGGATCAGAG-AGACTGATAAG  942

seq1  AGACACTGGTGGGCTTTCCAGGCTATCCTAAAGCCTTTGACAAAGGGCAT  1000
       || ||||||||||||| ||||||||||||||| |||||||||  |||||
seq2  -GA-ACTGGTGGGCTTT-CAGGCTATCCTAAAG-CTTTGACAA--GGCAT  986

seq1  CTTGCTCATT  1010
      | ||||||||
seq2  C-TGCTCATT  995