BAC Information

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BAC

Clone NameB6Ng01-070H19
Chromosome8 (Build37)
Map Location 98,126,612 - 98,274,754
singlet/doubletdoublet
Overlap geneLOC100041040, Gins3, LOC547022, Ndrg4, Setd6, Cnot1
Upstream geneRspry1, Arl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3, BC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2, 4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088
Downstream geneLOC100041953, LOC100041088, BC031853, LOC100041972, Got2, LOC667445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070H19.bB6Ng01-070H19.g
ACCDH888479DH888480
length1,108627
definitionDH888479|Mus musculus domesticus DNA, BAC clone: B6Ng01-070H19, 5' end.DH888480|Mus musculus domesticus DNA, BAC clone: B6Ng01-070H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,126,612 - 98,127,723)(98,274,128 - 98,274,754)
sequence
gaattcaacacagtaatttctccatatttattaaaatctgaggtgagaga
ggtggctcagtggctaagagtgctttatggtcttgcaaaaggtccaagtt
ggattcccagtgcccacttctggtggtgcacagtcacctgtaactacagc
tccaggaggatctcgtgcttcaggccgctgtgggcacctgcactcacggg
cacatacccctcccccacatacaaaattagaaataaatgtattttttaaa
atcgaccttttaaaataaaatatttaatttttaagagtctgccgtgctgg
gcagtggtggtgcacgcctttaaacccagaactcaggaggcagaggcagg
cagatttctgagtttgaagccaacctggtctacagagtgagttcctggac
agccagggctacaccattttgagctagagagatggctcagtggttaagag
cagtgactgctcttctagaggtcctgagttcaaatcccagcaaccacatc
tgtcatgggatctggtgccctcttctggtgtctgaagagagcagcaatgt
actcatatataaagcaaatgaataaatatttataatttttttaaaaatct
gccatttcccaggcattggcacacttgggagacagaggcaaggagaagtt
taggagttccaggtctgccagggctataaagtgagaccctgtttcaaaca
aaacaaaacaaaaatctatccttctttcctccactgatctgaaactccaa
cttcaatctaaaaacagatcgttgtgttgtgtatatttggggaaaagaaa
atcatctctgggttctctggattccgtacccaagattcacacgttcagcc
aagtgccagcatttgtgtgtttcaattctttcttgcttctcaatgtgcct
cgaattctcattccttgtatgcccatccgattcctttattacatcgcaac
tctctgagggagagggatgctttcttatcacttttgaattccgaaagctt
ttccttgtcgggagtgggcgttccgtcagcatttgttacttgattcagct
tggcatgaatggaaggctggataggtagattcatagcagagtcaaatctc
cctttcag
gaattcactgggagtcaatttctacaaaagtagacctatgaaataatgca
tattattctttgtgtactattaaaatttgagaaacctttttagtggttat
ttttgaaattatagatattaattatgcctttggcttgcatttggatagtc
agtttgaaatgaaacttgtttaatctcttaaaataatgttaatttacata
cagtagccggacatggtggtgcacacctttaatcccagtacaagggaggc
agaggcaggcagatttctgagttccaggccagcctggtctacaaagtgag
ttccaggacagccagggctacactgagaaaccctgtctcaaaaaacaaac
aaacaaaaactttacatacagtagatagactgtaaggaataacagttatc
acatttaaaatgttagtctgccagcagtgattacagtgtgggaaaggaaa
ttctcaggcagctcctacaggcaattaatgattgctgagagggagaatta
gtctttcccaagggattgcttcctaattagtcaattagttactctgtatt
aagtaatcaatcttaaaaactaaagcaatattgaatagactgagcagatt
gtatggatgtggggtgggggataataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_98126612_98127723
seq2: B6Ng01-070H19.b_38_1145

seq1  GAATTCAACACAGTAATTTCTCCATATTTATTAAAATCTGAGGTGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACACAGTAATTTCTCCATATTTATTAAAATCTGAGGTGAGAGA  50

seq1  GGTGGCTCAGTGGCTAAGAGTGCTTTATGGTCTTGCAAAAGGTCCAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTCAGTGGCTAAGAGTGCTTTATGGTCTTGCAAAAGGTCCAAGTT  100

seq1  GGATTCCCAGTGCCCACTTCTGGTGGTGCACAGTCACCTGTAACTACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCCCAGTGCCCACTTCTGGTGGTGCACAGTCACCTGTAACTACAGC  150

seq1  TCCAGGAGGATCTCGTGCTTCAGGCCGCTGTGGGCACCTGCACTCACGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAGGATCTCGTGCTTCAGGCCGCTGTGGGCACCTGCACTCACGGG  200

seq1  CACATACCCCTCCCCCACATACAAAATTAGAAATAAATGTATTTTTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACCCCTCCCCCACATACAAAATTAGAAATAAATGTATTTTTTAAA  250

seq1  ATCGACCTTTTAAAATAAAATATTTAATTTTTAAGAGTCTGCCGTGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGACCTTTTAAAATAAAATATTTAATTTTTAAGAGTCTGCCGTGCTGG  300

seq1  GCAGTGGTGGTGCACGCCTTTAAACCCAGAACTCAGGAGGCAGAGGCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGTGGTGCACGCCTTTAAACCCAGAACTCAGGAGGCAGAGGCAGG  350

seq1  CAGATTTCTGAGTTTGAAGCCAACCTGGTCTACAGAGTGAGTTCCTGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTCTGAGTTTGAAGCCAACCTGGTCTACAGAGTGAGTTCCTGGAC  400

seq1  AGCCAGGGCTACACCATTTTGAGCTAGAGAGATGGCTCAGTGGTTAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGCTACACCATTTTGAGCTAGAGAGATGGCTCAGTGGTTAAGAG  450

seq1  CAGTGACTGCTCTTCTAGAGGTCCTGAGTTCAAATCCCAGCAACCACATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACTGCTCTTCTAGAGGTCCTGAGTTCAAATCCCAGCAACCACATC  500

seq1  TGTCATGGGATCTGGTGCCCTCTTCTGGTGTCTGAAGAGAGCAGCAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGGGATCTGGTGCCCTCTTCTGGTGTCTGAAGAGAGCAGCAATGT  550

seq1  ACTCATATATAAAGCAAATGAATAAATATTTATAATTTTTTTAAAAATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATATATAAAGCAAATGAATAAATATTTATAATTTTTTTAAAAATCT  600

seq1  GCCATTTCCCAGGCATTGGCACACTTGGGAGACAGAGGCAAGGAGAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTCCCAGGCATTGGCACACTTGGGAGACAGAGGCAAGGAGAAGTT  650

seq1  TAGGAGTTCCAGGTCTGCCAGGGCTATAAAGTGAGACCCTGTTTCAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTTCCAGGTCTGCCAGGGCTATAAAGTGAGACCCTGTTTCAAACA  700

seq1  AAACAAAACAAAAATCTATCCTTCTTTCCTCCACTGATCTGAAACTCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAAAATCTATCCTTCTTTCCTCCACTGATCTGAAACTCCAA  750

seq1  CTTCAATCTAAAAACAGATCGTTGTGTTGTGTATATTTGGGGAAAAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATCTAAAAACAGATCGTTGTGTTGTGTATATTTGGGGAAAAGAAA  800

seq1  ATCATCTCTGGGTTCTCTGGATTCCGTACCCAAGATTCACACGTTCAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTCTGGGTTCTCTGGATTCCGTACCCAAGATTCACACGTTCAGCC  850

seq1  AAGTGCCAGCATTTGTGTGTTTCAATTCTTTCTTGCTTCTCAATGTGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCAGCATTTGTGTGTTTCAATTCTTTCTTGCTTCTCAATGTGCCT  900

seq1  CGAATTCTCATTCCTTGTATGCCCATCCGATTCCTTTATTACATCGCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CGAATTCTCATTCCTTGTATGCCCATCCGATTCCTTTATTACATCGC-AA  949

seq1  CTCTCTGAGGGAGAGGGATGCTTTCTTATCAACTTTTGAATTCCGAAAGC  1000
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTCTCTGAGGGAGAGGGATGCTTTCTTATC-ACTTTTGAATTCCGAAAGC  998

seq1  TTTTCCTTGTCGGGAGTGGGCGTTCCGTCAGCATTTGTTACTTGATTCAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTGTCGGGAGTGGGCGTTCCGTCAGCATTTGTTACTTGATTCAG  1048

seq1  CTTGGCATGAATGGAAGGCTGGATAGGTAGATTCATAGCAGAGTCAAATC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCATGAATGGAAGGCTGGATAGGTAGATTCATAGCAGAGTCAAATC  1098

seq1  TCCCCTTTTCAG  1112
      ||||  ||||||
seq2  TCCC--TTTCAG  1108

seq1: chr8_98274128_98274754
seq2: B6Ng01-070H19.g_63_689 (reverse)

seq1  TTATTATCCCCCACCCCACATCCATACAATCTGCTCAGTCTATTCAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATCCCCCACCCCACATCCATACAATCTGCTCAGTCTATTCAATAT  50

seq1  TGCTTTAGTTTTTAAGATTGATTACTTAATACAGAGTAACTAATTGACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAGTTTTTAAGATTGATTACTTAATACAGAGTAACTAATTGACTA  100

seq1  ATTAGGAAGCAATCCCTTGGGAAAGACTAATTCTCCCTCTCAGCAATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGAAGCAATCCCTTGGGAAAGACTAATTCTCCCTCTCAGCAATCAT  150

seq1  TAATTGCCTGTAGGAGCTGCCTGAGAATTTCCTTTCCCACACTGTAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCCTGTAGGAGCTGCCTGAGAATTTCCTTTCCCACACTGTAATCA  200

seq1  CTGCTGGCAGACTAACATTTTAAATGTGATAACTGTTATTCCTTACAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGCAGACTAACATTTTAAATGTGATAACTGTTATTCCTTACAGTC  250

seq1  TATCTACTGTATGTAAAGTTTTTGTTTGTTTGTTTTTTGAGACAGGGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACTGTATGTAAAGTTTTTGTTTGTTTGTTTTTTGAGACAGGGTTT  300

seq1  CTCAGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGC  350

seq1  CTGGAACTCAGAAATCTGCCTGCCTCTGCCTCCCTTGTACTGGGATTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTCAGAAATCTGCCTGCCTCTGCCTCCCTTGTACTGGGATTAAA  400

seq1  GGTGTGCACCACCATGTCCGGCTACTGTATGTAAATTAACATTATTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCACCACCATGTCCGGCTACTGTATGTAAATTAACATTATTTTAA  450

seq1  GAGATTAAACAAGTTTCATTTCAAACTGACTATCCAAATGCAAGCCAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTAAACAAGTTTCATTTCAAACTGACTATCCAAATGCAAGCCAAAG  500

seq1  GCATAATTAATATCTATAATTTCAAAAATAACCACTAAAAAGGTTTCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAATTAATATCTATAATTTCAAAAATAACCACTAAAAAGGTTTCTCA  550

seq1  AATTTTAATAGTACACAAAGAATAATATGCATTATTTCATAGGTCTACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAATAGTACACAAAGAATAATATGCATTATTTCATAGGTCTACTT  600

seq1  TTGTAGAAATTGACTCCCAGTGAATTC  627
      |||||||||||||||||||||||||||
seq2  TTGTAGAAATTGACTCCCAGTGAATTC  627