BAC Information

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BAC

Clone NameB6Ng01-070J03
Chromosome8 (Build37)
Map Location 102,343,180 - 102,448,270
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh8, A330008L17Rik, LOC667531
Downstream geneLOC100042069, LOC436054, LOC100042078, LOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070J03.bB6Ng01-070J03.g
ACCDH888535DH888536
length1,1361,083
definitionDH888535|Mus musculus domesticus DNA, BAC clone: B6Ng01-070J03, 5' end.DH888536|Mus musculus domesticus DNA, BAC clone: B6Ng01-070J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,447,129 - 102,448,270)(102,343,180 - 102,344,279)
sequence
gaattctctgttgagatttgtgtttagatcatatatatcccatttttaaa
ttaaaatatttgatttgggatgtttagattctttagttctttatatatgt
tgggtatcagccccctgtcagatatggggttgctgaagatgttttcccat
tctgtatgtaggctgtcatttttgtccttttgaaagtgttttttacctta
tagaagcttttcaatttcataagattccacttattattttttgatcttaa
tacttgtacaattgatgttctgttcaggaagtggtctcctgtgccaatgc
atctatcaacacaaatttattgcaggattattttttttctaatttcagac
tttgataaacaagctagaaaaaggagagagatattatcaatattagaaaa
acttatgccatattcaacattaataatgtaaaatgtgaaaacatttaaat
gaaagtgacatcatataacatatgatttctttggataaataatgtcaaat
tgagcacatcttatgcttacattaaaattccaatgtttttaaggtctata
gttctcatttagatatttctaaagtgttggttttagggcagtaaatgttt
aatcagaaattcttttgtggggggaacaatctgtttccatatagatatgg
tgtctggaaaacattcttaaggtaacatattttccagttatttaaatgca
gagtttaaaatccatattgaagttctattaacctgtcaattaatacaata
attaactcattaccttaatggtactataattatctgttagtaatgattgc
tttttaattcttccaaagtcaaagtctaatgattttatttatgcttccca
taagtaattttcttactatgtcctttcccctctgtgggttataagtgcaa
aacagagaatctctgtgatatattatctaaaccttaccccacctagattt
tttccagcattagtttgcctctaatgaaaaggcaacctttaagcagtatt
tcaccttactgcatctctttcctaaactgggatagaattcaaactttctc
tagttggagggatggggtgtcttggttgtaagtacactgtttcacgaagg
taaacagcttctctctcttgttctctctctctctct
gaattctgcagaattaacatttaagttaaagggatactactattgaaaaa
cgcaaagtcagtgtattcattaaattaggagatccttcatctgactatgg
ttgtatgcacagcaataacaaacagcaagcaaatatgatttctttgcatt
tcattaagttttcgtacatatgcactaaaagacaaacatttgttcattga
ggacattcatggactagatcatgaactttatgtgacagcttctctgggag
gtttcacatgattttattatattttgacagctaagaatgttgaaaatata
gaagaatggatatgaactcttgtcttactaatttgagattttataaacac
atgctggggacagagagccaaaggtcagagtccatttttgctaaaaacaa
aagggatgaaagtattgtaatctatacaagagtcagaaatgtgttcaaaa
gttccctcagtagctctgaaagtcttagcatcacagaaatgctgactgca
ttgtcgagcgctgtcgatttttttttttaaccttaaaaatagacttgaat
tcatttaccacagggcagagaggaaaagagaataagtcaggaagatctca
aagtggagatgcttagacacaagagacagaagacaagcaggaggtaaaat
gtaattttgagggaaaaaatcataagataagattggattttttggtataa
tttttttctgaaaatgcaatttgtaacaagttatattgtctgtaacggga
tccctactgcacttctaatgtgtttttttagcatctgaaacatgaaagca
catcagaatacttcatgtgcaaaccatggcattaaacagattagaaaaac
taaatgtcacacggtaacaggatcggttcttgtgcggttaatttagtaga
aagccagagaatcgctgcagagacactttctctagttatgcaccctgcag
ctaaaataccttgtatactttttttgagaacaatacttggctgaaatgat
aatttaagctgtgtggttttgatatcactcagcagatgctctgaccagtt
gtgtattcagagaatagatgtcaagatggataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_102447129_102448270
seq2: B6Ng01-070J03.b_46_1181 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAG-AGCTGTTTAACCTTCGTGGAAAC  49
      |||||||||||||||   |||||||| |||||||| |||||||| |||||
seq2  AGAGAGAGAGAGAGAACAAGAGAGAGAAGCTGTTT-ACCTTCGT-GAAAC  48

seq1  AGTGGTACTTTACAACCCAAGACACCCCATCCCTTCCCACCTAGAGAAAG  99
      ||| |||| |||||| ||||||||||||||||||  ||| ||||||||||
seq2  AGT-GTAC-TTACAA-CCAAGACACCCCATCCCT--CCAACTAGAGAAAG  93

seq1  TTTGAATTCTATCCCAGTTTAGGAAAGAGATGCAGTAAGGTGAAATACTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTCTATCCCAGTTTAGGAAAGAGATGCAGTAAGGTGAAATACTG  143

seq1  CTTAAAGGTTGCCTTTTCATTAGAGGCAAACTAATGCTGGAAAAAATCTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGGTTGCCTTTTCATTAGAGGCAAACTAATGCTGGAAAAAATCTA  193

seq1  GGTGGGGTAAGGTTTAGATAATATATCACAGAGATTCTCTGTTTTGCACT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGTAAGGTTTAGATAATATATCACAGAGATTCTCTGTTTTGCACT  243

seq1  TATAACCCACAGAGGGGAAAGGACATAGTAAGAAAATTACTTATGGGAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACCCACAGAGGGGAAAGGACATAGTAAGAAAATTACTTATGGGAAG  293

seq1  CATAAATAAAATCATTAGACTTTGACTTTGGAAGAATTAAAAAGCAATCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATAAAATCATTAGACTTTGACTTTGGAAGAATTAAAAAGCAATCA  343

seq1  TTACTAACAGATAATTATAGTACCATTAAGGTAATGAGTTAATTATTGTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAACAGATAATTATAGTACCATTAAGGTAATGAGTTAATTATTGTA  393

seq1  TTAATTGACAGGTTAATAGAACTTCAATATGGATTTTAAACTCTGCATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGACAGGTTAATAGAACTTCAATATGGATTTTAAACTCTGCATTT  443

seq1  AAATAACTGGAAAATATGTTACCTTAAGAATGTTTTCCAGACACCATATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTGGAAAATATGTTACCTTAAGAATGTTTTCCAGACACCATATC  493

seq1  TATATGGAAACAGATTGTTCCCCCCACAAAAGAATTTCTGATTAAACATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGAAACAGATTGTTCCCCCCACAAAAGAATTTCTGATTAAACATT  543

seq1  TACTGCCCTAAAACCAACACTTTAGAAATATCTAAATGAGAACTATAGAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCCTAAAACCAACACTTTAGAAATATCTAAATGAGAACTATAGAC  593

seq1  CTTAAAAACATTGGAATTTTAATGTAAGCATAAGATGTGCTCAATTTGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAACATTGGAATTTTAATGTAAGCATAAGATGTGCTCAATTTGAC  643

seq1  ATTATTTATCCAAAGAAATCATATGTTATATGATGTCACTTTCATTTAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTATCCAAAGAAATCATATGTTATATGATGTCACTTTCATTTAAA  693

seq1  TGTTTTCACATTTTACATTATTAATGTTGAATATGGCATAAGTTTTTCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCACATTTTACATTATTAATGTTGAATATGGCATAAGTTTTTCTA  743

seq1  ATATTGATAATATCTCTCTCCTTTTTCTAGCTTGTTTATCAAAGTCTGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGATAATATCTCTCTCCTTTTTCTAGCTTGTTTATCAAAGTCTGAA  793

seq1  ATTAGAAAAAAAATAATCCTGCAATAAATTTGTGTTGATAGATGCATTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAAAAAAATAATCCTGCAATAAATTTGTGTTGATAGATGCATTGG  843

seq1  CACAGGAGACCACTTCCTGAACAGAACATCAATTGTACAAGTATTAAGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAGACCACTTCCTGAACAGAACATCAATTGTACAAGTATTAAGAT  893

seq1  CAAAAAATAATAAGTGGAATCTTATGAAATTGAAAAGCTTCTATAAGGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAATAATAAGTGGAATCTTATGAAATTGAAAAGCTTCTATAAGGTA  943

seq1  AAAAACACTTTCAAAAGGACAAAAATGACAGCCTACATACAGAATGGGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACACTTTCAAAAGGACAAAAATGACAGCCTACATACAGAATGGGAA  993

seq1  AACATCTTCAGCAACCCCATATCTGACAGGGGGCTGATACCCAACATATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTTCAGCAACCCCATATCTGACAGGGGGCTGATACCCAACATATA  1043

seq1  TAAAGAACTAAAGAATCTAAACATCCCAAATCAAATATTTTAATTTAAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAACTAAAGAATCTAAACATCCCAAATCAAATATTTTAATTTAAAA  1093

seq1  ATGGGATATATATGATCTAAACACAAATCTCAACAGAGAATTC  1142
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATATATATGATCTAAACACAAATCTCAACAGAGAATTC  1136

seq1: chr8_102343180_102344279
seq2: B6Ng01-070J03.g_66_1148

seq1  GAATTCTGCAGAATTAACATTTAAGTTAAAGGGATACTACTATTGAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGAATTAACATTTAAGTTAAAGGGATACTACTATTGAAAAA  50

seq1  CGCAAAGTCAGTGTATTCATTAAATTAGGAGATCCTTCATCTGACTATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAAGTCAGTGTATTCATTAAATTAGGAGATCCTTCATCTGACTATGG  100

seq1  TTGTATGCACAGCAATAACAAACAGCAAGCAAATATGATTTCTTTGCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGCACAGCAATAACAAACAGCAAGCAAATATGATTTCTTTGCATT  150

seq1  TCATTAAGTTTTCGTACATATGCACTAAAAGACAAACATTTGTTCATTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAGTTTTCGTACATATGCACTAAAAGACAAACATTTGTTCATTGA  200

seq1  GGACATTCATGGACTAGATCATGAACTTTATGTGACAGCTTCTCTGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTCATGGACTAGATCATGAACTTTATGTGACAGCTTCTCTGGGAG  250

seq1  GTTTCACATGATTTTATTATATTTTGACAGCTAAGAATGTTGAAAATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACATGATTTTATTATATTTTGACAGCTAAGAATGTTGAAAATATA  300

seq1  GAAGAATGGATATGAACTCTTGTCTTACTAATTTGAGATTTTATAAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATGGATATGAACTCTTGTCTTACTAATTTGAGATTTTATAAACAC  350

seq1  ATGCTGGGGACAGAGAGCCAAAGGTCAGAGTCCATTTTTGCTAAAAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGGGACAGAGAGCCAAAGGTCAGAGTCCATTTTTGCTAAAAACAA  400

seq1  AAGGGATGAAAGTATTGTAATCTATACAAGAGTCAGAAATGTGTTCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATGAAAGTATTGTAATCTATACAAGAGTCAGAAATGTGTTCAAAA  450

seq1  GTTCCCTCAGTAGCTCTGAAAGTCTTAGCATCACAGAAATGCTGACTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTCAGTAGCTCTGAAAGTCTTAGCATCACAGAAATGCTGACTGCA  500

seq1  TTGTCGAGCGCTGTCGATTTTTTTTTTTAACCTTAAAAATAGACTTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCGAGCGCTGTCGATTTTTTTTTTTAACCTTAAAAATAGACTTGAAT  550

seq1  TCATTTACCACAGGGCAGAGAGGAAAAGAGAATAAGTCAGGAAGATCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTACCACAGGGCAGAGAGGAAAAGAGAATAAGTCAGGAAGATCTCA  600

seq1  AAGTGGAGATGCTTAGACACAAGAGACAGAAGACAAGCAGGAGGTAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAGATGCTTAGACACAAGAGACAGAAGACAAGCAGGAGGTAAAAT  650

seq1  GTAATTTTGAGGGAAAAAATCATAAGATAAGATTGGATTTTTTGGTATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTGAGGGAAAAAATCATAAGATAAGATTGGATTTTTTGGTATAA  700

seq1  TTTTTTTCTGAAAATGCAATTTGTAACAAGTTATATTGTCTGTAACGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTGAAAATGCAATTTGTAACAAGTTATATTGTCTGTAACGGGA  750

seq1  TCCCTACTGCACTTCTAATGTGTTTTTTTAGCATCTGAAACATGAAAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACTGCACTTCTAATGTGTTTTTTTAGCATCTGAAACATGAAAGCA  800

seq1  CATCAGAATACTTCATGTGCAAACCATGGCATTAAACAGATTAGAAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAATACTTCATGTGCAAACCATGGCATTAAACAGATTAGAAAAAC  850

seq1  TAAATGTCACACGGTAACAGGATCGGTTCTTGTGCGGTTAATTTAGTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTCACACGGTAACAGGATCGGTTCTTGTGCGGTTAATTTAGTAGA  900

seq1  AAGCCAGAGAATCGCTGCAGGAGACACTTTCTCTAGTTATGCACCCTGCA  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAGCCAGAGAATCGCTGCA-GAGACACTTTCTCTAGTTATGCACCCTGCA  949

seq1  GCTAAAATACCTTGTATACTTTTTTTTGAGGAACAATAACTTGGCTGAAA  1000
      ||||||||||||||||||| ||||||||| ||||||| ||||||||||||
seq2  GCTAAAATACCTTGTATAC-TTTTTTTGA-GAACAAT-ACTTGGCTGAAA  996

seq1  TGATAAATTTAAAGCCTGTGTGGTTTTTGGATATCACCTCAGCAGAATTG  1050
      |||| |||||||   ||||||||||||  ||||||| |||||||||  ||
seq2  TGAT-AATTTAA--GCTGTGTGGTTTT--GATATCA-CTCAGCAGA--TG  1038

seq1  CTCTGAACCAGGTTGTGTATTCAGAGAAATAGATGTTCAAGATTGGATAA  1100
      ||||| |||| ||||||||||||||| |||||||| |||||| |||||||
seq2  CTCTG-ACCA-GTTGTGTATTCAGAG-AATAGATG-TCAAGA-TGGATAA  1083