BAC Information

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BAC

Clone NameB6Ng01-071N14
Chromosome8 (Build37)
Map Location 40,452,638 - 40,579,804
singlet/doubletdoublet
Overlap geneEG621335, LOC434304
Upstream geneTusc3, LOC100038974, LOC632066
Downstream geneMsr1, EG621431, LOC100039072, LOC666959, EG632166, Fgf20, 2900075B16Rik, Zdhhc2, Cnot7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071N14.bB6Ng01-071N14.g
ACCDH889429DH889430
length1,1411,226
definitionDH889429|Mus musculus domesticus DNA, BAC clone: B6Ng01-071N14, 5' end.DH889430|Mus musculus domesticus DNA, BAC clone: B6Ng01-071N14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,452,638 - 40,453,791)(40,578,572 - 40,579,804)
sequence
gaattcaccagagcagaaggagaaagaaataagaaagtcagatataatac
aataattatgcacaccaaggctaactgaaaagcagtcacacacaaatgaa
atctatacagctgttgtccagggctaaggttaggagaaatgggaacaact
ctttttttttttttccaaattgctgcttacaggctactgagatgtctcca
tcctggcctggcctactgcaggcagtccaatttttcggatggtgggtccc
ttggagggatgtgtctcctgcttcttagggtcccagacgctgtccttttc
tataaggagctgccacaggcttctgagatgtctccatctgagcctactgc
aggcagtccctgtcattgtatgctgtccccaagaaacactaatcccattt
gtgagaacgccatccctgtgacctagtcacctttaaataccatcccagtg
aagaagaagacttcagcatatggattttgagcaacaatcactctattctc
tgcttcaatcttaagtccatttatatctctgctctttctccacaccacca
aggctctgttgctcttcattgtgggtctccattgctcttcattgaaacac
agagttattcttagatttgaactctttgataatggtgctgcttctctccc
tcactgtctcccaactcccttacatgaatcgactctatttccccagtatt
acagtctcactgctatcatatattcttattgtgatactttatttttttct
aacatgaaatctgtttttttttcaggtactaatttcctcatgttattttc
ctgactgaagatcagctatgagatcacctgtctatcccctaagacttcct
gatattttctgtgttgacatagtgtgcattctagttaagatgtgtacctt
aagatagaacgttgcttttatctctgaggtatgtagaaaagagcaattgt
ttcagacgtatctcttgagcccaataaactagttgaagaaaacggatttt
gttggatttatgaacactttaagctcagaattttcagggtttcagagcta
tagttcaactttagcatggacttgaagttgatacaatttactattctagt
cttttttagtttataattctgcactgattttttcacttaat
gaattccacacccctaagccccttaccccataaaaccccctagctttcaa
gcctcgtggccgacatccattatctcctgtgtgggatgcatgtcggtacg
gagctctgtcattaaactgcctcatgtgattagagtaatggattctcatg
tttctttgggtgctctcttactcccaagactataatgggggggccaccaa
aagggggtcttacattttggggggctcgtcctggatttgggagctcccag
aaacccgagaataccccttggaggtacgtttgtttgtgtgagtcttgtct
gttgtctgttgtctaagtgtctaagtgtggcatcgctgaatttgtttctt
ggtttttcagttctggtattctgtattctggcagctgcccctgtggcccg
tgagtatgcttagatatactggtgtgtttttttctctgttgctgtcttgt
tttatttgtggttttcgtcttgggatacagacactgtacatcagaggtaa
agtggaatccctccctgcctgtatgtctgtatgtctgtgtgtctgactgt
cttgttcacttgtgtgtcctccattagatgaccttctgattctattttgc
ttttggtttgtctggtttcaggtctagttttgatcccaaggggttgactg
attatcttggtttggttttaggccaatctcaggttctggggtccttccca
tggagagaggtccatttgggttggttgcagtgacagtgagatgtgccaaa
ttgttgcaggtcacaactctggaggatgctccggtgtcaagctgggaagt
tggatctgaaacagtccttctcaacccagcagcagctagggttctgtata
tgcctggaacagatagtgtcaggcttctctggaaatctcgtgtaagatgc
cctgtattggtcttgcttgtgtttgtcatttctgtggtactgtgatctat
ggtggttgcctgaaaacggtttctgtgtgtgttttgtgtgtcttctttgt
gtcagacttggactaaaaactgacaactgtttttgagttatgccctctgg
aataagcctaagaattcctgacgattcctattgcttgaccacttctttcg
tatctcttttgcctacttccactccaacttcgaagagcatagcaagtcac
aatggtttctccccatgaacttggaacctaggaaaattgactcttgaacc
ggaacacagagaggggtggttcctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_40452638_40453791
seq2: B6Ng01-071N14.b_48_1188

seq1  GAATTCACCAGAGCAGAAGGAGAAAGAAATAAGAAAGTCAGATATAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAGAGCAGAAGGAGAAAGAAATAAGAAAGTCAGATATAATAC  50

seq1  AATAATTATGCACACCAAGGCTAACTGAAAAGCAGTCACACACAAATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTATGCACACCAAGGCTAACTGAAAAGCAGTCACACACAAATGAA  100

seq1  ATCTATACAGCTGTTGTCCAGGGCTAAGGTTAGGAGAAATGGGAACAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATACAGCTGTTGTCCAGGGCTAAGGTTAGGAGAAATGGGAACAACT  150

seq1  CTTTTTTTTTTTTTCCAAATTGCTGCTTACAGGCTACTGAGATGTCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTTTTTCCAAATTGCTGCTTACAGGCTACTGAGATGTCTCCA  200

seq1  TCCTGGCCTGGCCTACTGCAGGCAGTCCAATTTTTCGGATGGTGGGTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCCTGGCCTACTGCAGGCAGTCCAATTTTTCGGATGGTGGGTCCC  250

seq1  TTGGAGGGATGTGTCTCCTGCTTCTTAGGGTCCCAGACGCTGTCCTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGGATGTGTCTCCTGCTTCTTAGGGTCCCAGACGCTGTCCTTTTC  300

seq1  TATAAGGAGCTGCCACAGGCTTCTGAGATGTCTCCATCTGAGCCTACTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGAGCTGCCACAGGCTTCTGAGATGTCTCCATCTGAGCCTACTGC  350

seq1  AGGCAGTCCCTGTCATTGTATGCTGTCCCCAAGAAACACTAATCCCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTCCCTGTCATTGTATGCTGTCCCCAAGAAACACTAATCCCATTT  400

seq1  GTGAGAACGCCATCCCTGTGACCTAGTCACCTTTAAATACCATCCCAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAACGCCATCCCTGTGACCTAGTCACCTTTAAATACCATCCCAGTG  450

seq1  AAGAAGAAGACTTCAGCATATGGATTTTGAGCAACAATCACTCTATTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGACTTCAGCATATGGATTTTGAGCAACAATCACTCTATTCTC  500

seq1  TGCTTCAATCTTAAGTCCATTTATATCTCTGCTCTTTCTCCACACCACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAATCTTAAGTCCATTTATATCTCTGCTCTTTCTCCACACCACCA  550

seq1  AGGCTCTGTTGCTCTTCATTGTGGGTCTCCATTGCTCTTCATTGAAACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTGTTGCTCTTCATTGTGGGTCTCCATTGCTCTTCATTGAAACAC  600

seq1  AGAGTTATTCTTAGATTTGAACTCTTTGATAATGGTGCTGCTTCTCTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTATTCTTAGATTTGAACTCTTTGATAATGGTGCTGCTTCTCTCCC  650

seq1  TCACTGTCTCCCAACTCCCTTACATGAATCGACTCTATTTCCCCAGTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTCTCCCAACTCCCTTACATGAATCGACTCTATTTCCCCAGTATT  700

seq1  ACAGTCTCACTGCTATCATATATTCTTATTGTGATACTTTATTTTTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTCACTGCTATCATATATTCTTATTGTGATACTTTATTTTTTTCT  750

seq1  AACATGAAATCTGTTTTTTTTTCAGGTACTAATTTCCTCATGTTATTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAAATCTGTTTTTTTTTCAGGTACTAATTTCCTCATGTTATTTTC  800

seq1  CTGACTGAAGATCAGCTATGAGATCACCTGTCTATCCCCTAAGACTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGAAGATCAGCTATGAGATCACCTGTCTATCCCCTAAGACTTCCT  850

seq1  GATATTTTCTGTGTTGACATAGTGTGCATTCTAGTTAAGATGTGTACCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTCTGTGTTGACATAGTGTGCATTCTAGTTAAGATGTGTACCTT  900

seq1  AAGATAGAACGTTGCTTTTATCTCTGAGGTATGTAGAAAAGAGCAATTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGAACGTTGCTTTTATCTCTGAGGTATGTAGAAAAGAGCAATTGT  950

seq1  TTCAGACGTATCTCTTGAGCCCAATAAACTAGTTGAAGAAAAGGGATTTT  1000
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTCAGACGTATCTCTTGAGCCCAATAAACTAGTTGAAGAAAACGGATTTT  1000

seq1  GTTGGATTTAATGAACACTTTAAGCTCAGAAATTTTCAGTGGTTTTTCCA  1050
      ||||||||| ||||||||||||||||||| ||||||||| |||||   ||
seq2  GTTGGATTT-ATGAACACTTTAAGCTCAG-AATTTTCAG-GGTTT---CA  1044

seq1  GAGCCTATAGTTCAAACTTTTAGCATGGAACTTGAAGTTGATACAATTTA  1100
      ||| |||||||||||   |||||||||| |||||||||||||||||||||
seq2  GAG-CTATAGTTCAA--CTTTAGCATGG-ACTTGAAGTTGATACAATTTA  1090

seq1  CTATTCTAGTCTTTTATAG-TTATACATCTGCACTTGAATTTTTTCCAAC  1149
      ||||||||||||||| ||| |||||  ||||||||   ||||||||  ||
seq2  CTATTCTAGTCTTTTTTAGTTTATAATTCTGCACT--GATTTTTTC--AC  1136

seq1  TTAAT  1154
      |||||
seq2  TTAAT  1141

seq1: chr8_40578572_40579804
seq2: B6Ng01-071N14.g_67_1292 (reverse)

seq1  TCAGGGACCACCCCTCTCT-TGCTCCGGGTTTCCCAAG-CTCATTTCTCC  48
      ||||| ||||||||||||| || ||||| |    ||||  ||| || | |
seq2  TCAGGAACCACCCCTCTCTGTGTTCCGGTT----CAAGAGTCAATT-TTC  45

seq1  CTAGGCTCCAGGTCCAT-GGGCGGGACCACTGTGACCTGCTGGCTGCTCT  97
      ||||| |||| || ||| ||| |  |||| |||||| ||||   ||||||
seq2  CTAGGTTCCAAGTTCATGGGGAGAAACCATTGTGACTTGCT--ATGCTCT  93

seq1  CTGGAGTTGGAGTGGGAGGTAGGGCAGAAGAGGATCTGAAAGGAAGTGGT  147
        | ||||||||| ||| ||| |||| |||| |||  |||| ||||||||
seq2  TCGAAGTTGGAGT-GGAAGTA-GGCAAAAGA-GATACGAAA-GAAGTGGT  139

seq1  C-AGC-ATAGGGATCTGTCAGG-ATTCTTAGGCTTATTCCAGAGGGCATA  194
      | ||| ||||| ||| |||||| |||||||||||||||||||||||||||
seq2  CAAGCAATAGGAATC-GTCAGGAATTCTTAGGCTTATTCCAGAGGGCATA  188

seq1  ACTCAAAAACAGTTGTCAGTTTTTAGTCCAAGTCTGAACACAAAG-AGAC  243
      |||||||||||||||||||||||||||||||||||| |||||||| ||||
seq2  ACTCAAAAACAGTTGTCAGTTTTTAGTCCAAGTCTG-ACACAAAGAAGAC  237

seq1  ACACAAAACACACACAGAAACCGTTTTCAGGCAACCACCATAGAATCACA  293
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACACAAAACACACACAGAAACCGTTTTCAGGCAACCACCATAG-ATCACA  286

seq1  GTACCACAGAAATGACAAACACAAGCAAGACCAATACAGGGCATCTTACA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCACAGAAATGACAAACACAAGCAAGACCAATACAGGGCATCTTACA  336

seq1  CGAGATTTCCAGAGAAGCCTGACACTATCTGTTCCAGGCATATACAGAAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGATTTCCAGAGAAGCCTGACACTATCTGTTCCAGGCATATACAGAAC  386

seq1  CCTAGCTGCTGCTGGGTTGAGAAGGACTGTTTCAGATCCAACTTCCCAGC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTGCTGCTGGGTTGAGAAGGACTGTTTCAGATCCAACTTCCCAGC  436

seq1  TTGACACCGGAGCATCCTCCAGAGTTGTGACCTGCAACAATTTGGCACAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACCGGAGCATCCTCCAGAGTTGTGACCTGCAACAATTTGGCACAT  486

seq1  CTCACTGTCACTGCAACCAACCCAAATGGACCTCTCTCCATGGGAAGGAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGTCACTGCAACCAACCCAAATGGACCTCTCTCCATGGGAAGGAC  536

seq1  CCCAGAACCTGAGATTGGCCTAAAACCAAACCAAGATAATCAGTCAACCC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAACCTGAGATTGGCCTAAAACCAAACCAAGATAATCAGTCAACCC  586

seq1  CTTGGGATCAAAACTAGACCTGAAACCAGACAAACCAAAAGCAAAATAGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGATCAAAACTAGACCTGAAACCAGACAAACCAAAAGCAAAATAGA  636

seq1  ATCAGAAGGTCATCTAATGGAGGACACACAAGTGAACAAGACAGTCAGAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAGGTCATCTAATGGAGGACACACAAGTGAACAAGACAGTCAGAC  686

seq1  ACACAGACATACAGACATACAGGCAGGGAGGGATTCCACTTTACCTCTGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACATACAGACATACAGGCAGGGAGGGATTCCACTTTACCTCTGA  736

seq1  TGTACAGTGTCTGTATCCCAAGACGAAAACCACAAATAAAACAAGACAGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGTGTCTGTATCCCAAGACGAAAACCACAAATAAAACAAGACAGC  786

seq1  AACAGAGAAAAAAACACACCAGTATATCTAAGCATACTCACGGGCCACAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGAAAAAAACACACCAGTATATCTAAGCATACTCACGGGCCACAG  836

seq1  GGGCAGCTGCCAGAATACAGAATACCAGAACTGAAAAACCAAGAAACAAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCTGCCAGAATACAGAATACCAGAACTGAAAAACCAAGAAACAAA  886

seq1  TTCAGCGATGCCACACTTAGACACTTAGACAACAGACAACAGACAAGACT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCGATGCCACACTTAGACACTTAGACAACAGACAACAGACAAGACT  936

seq1  CACACAAACAAACGTACCTCCAAGGGGTATTCTCGGGTTTCTGGGAGCTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAACAAACGTACCTCCAAGGGGTATTCTCGGGTTTCTGGGAGCTC  986

seq1  CCAAATCCAGGACGAGCCCCCCAAAATGTAAGACCCCCTTTTGGTGGCCC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCCAGGACGAGCCCCCCAAAATGTAAGACCCCCTTTTGGTGGCCC  1036

seq1  CCCCATTATAGTCTTGGGAGTAAGAGAGCACCCAAAGAAACATGAGAATC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTATAGTCTTGGGAGTAAGAGAGCACCCAAAGAAACATGAGAATC  1086

seq1  CATTACTCTAATCACATGAGGCAGTTTAATGACAGAGCTCCGTACCGACA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTCTAATCACATGAGGCAGTTTAATGACAGAGCTCCGTACCGACA  1136

seq1  TGCATCCCACACAGGAGATAATGGATGTCGGCCACGAGGCTTGAAAGCTA  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCCACACAGGAGATAATGGATGTCGGCCACGAGGCTTGAAAGCTA  1186

seq1  GGGGGTTTTATGGGGTAAGGGGCTTAGGGGTGTGGAATTC  1233
      ||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTTTTATGGGGTAAGGGGCTTAGGGGTGTGGAATTC  1226