BAC Information

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BAC

Clone NameB6Ng01-072C17
Chromosome8 (Build37)
Map Location 33,777,438 - 33,881,800
singlet/doubletdoublet
Overlap genenone
Upstream geneEG330731, LOC100041340, Nrg1, 2010007E15Rik, EG666589, EG546052
Downstream geneLOC100042715, LOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072C17.bB6Ng01-072C17.g
ACCDH889659DH889660
length1,268990
definitionDH889659|Mus musculus domesticus DNA, BAC clone: B6Ng01-072C17, 5' end.DH889660|Mus musculus domesticus DNA, BAC clone: B6Ng01-072C17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,880,519 - 33,881,800)(33,777,438 - 33,778,366)
sequence
gaattcactgaagtgtgcaatgtgtactaagcattcagctcagattctca
tggaagttagacatttttataagtcatggactttagggttgatcacaaat
tattatacataatgttagagttagatgccctgaacattcagtactgatat
ttcaccagtgtatcctgattgagttttatttctgatgcttatttcataaa
agcactgtggtcagaaaagtgctatttcaaagcctttgtattgtgtttct
aggacttagtattagaatggtctggtaagcaagtgatagtgatgaaagct
tgttttgtagttttatttttattccacatactatcatagatttagaagat
catctagagcgggattttgttttcaagatagtaatgttttcattttatga
aggagcactgtatatttgtacatgtgcatatttatttttgcaaagagaca
catgtagctgatgatgttcaacaaacctatgctctagcagcgatttcctt
tatgcagagaaatgatgttagactgtggaggcaaagaggaaagggtcaga
gattaatctgaaaacaaagtctcacctcccattttgtgctacttggcaag
atggtcatgttagagataagcacattgcatttcctccttcagaagcaatg
taatgtgcttgcagtttatgggcttgggcaactacaaaagaaagtgcagt
ttggaaagagagcaaattgctctgggaccgagtagcatcacagacatata
ccactgaaaaatgactggtgattttatgagattacatacagcaagatttt
cctctctacatatcccactgcacataagttgaattttgctgagcacagct
gtgtctggaatcttggtctttcctaatactaagaccaagggagaaatcat
tttacttttctagagttcactttattgatgccccacattttctaaaatat
atttaaggcaatctatctgaatatctatcatataaatgagtaacataatt
gaggaatttaggagaaatagattgcaatattttaaagtaagagaaatctt
gaaattattacaaaaatgttgatgtcctgatcattatttgagtgctagat
aagttcataatggaaacttttcctgattctgacgaagctgagctagtcag
tttccctaagaataaagaacaagtcaggttgctgaaaaaaatctggacct
ctaagttgaattttgttcttgaaagatcctgttagattaatgattaggtt
tgaggaatttataaagct
gaattcaaggccagccttggcaagtcagtgagagctgatctcaaaataaa
aagtaaaaagtagaggcaaagggcagagcttgcatgagggtctgagttta
aattgttccaccaacaataaagtaagtaatttgaaaaataaatagggctc
aaaaagaaccacaagttctgggggactaaagcttttgataagaaaatcat
tagcataccaatgatctatgttttgtttccaataatattaggtttgaaaa
ccatgacataattacctagccaccttctcctattacatgcatccagaact
tgagagatccattaggtggcactcatctttctcctttacagaagttatac
ctaaacagccattggcatcttcggtctctatacttccatttctatatagg
catgttgattctatgaccaaacgatttaatgaatgctacgcacactccag
tgaagtctgcttggcaggccaagaggcctggaagcactcatgaggtaggg
agtttcaaggaaactcaatctcctggaaccaggcattctcataacccgta
tactcataccctatccccgcgttagtctggtgtatggatccacatgctct
cttttagtattattttattataagtgcctttaaagattgaattttgacat
aggtaagcctccatcagtgttccaacatcctagaaaacccttgaagccaa
cgagcttggaattcagtaggaattcagtgagaaggttatcaattcaataa
cattcaaatttacttctagtagagatggtgaagctaattaggcattacaa
agaacggaatagctcagggctggtctgcagagtgtttacttgggacaata
gccagccttacccagacaagggaattcacaatggcctagtgattgtgggt
ttaccatgaaagagttagggaatccccctgagacagtttcttaactagcc
caaagaaacagcatatcagcatttactagaacccctgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_33880519_33881800
seq2: B6Ng01-072C17.b_45_1312 (reverse)

seq1  AGCTTTATAAA---CTCAAACACTACCTATACTAT-ACAGGAACTCTTTC  46
      |||||||||||   |||||||   | |  || | | ||||||  ||||||
seq2  AGCTTTATAAATTCCTCAAACCTAATCATTAATCTAACAGGA--TCTTTC  48

seq1  TAGAGACAAATAATCTAACTTATAGAGAGTCAGATTTTTTTCTAGGCAAC  96
       ||| ||||  |||  ||||  |||||   |||||||||||| ||  | |
seq2  AAGA-ACAA--AATTCAACT--TAGAGGTCCAGATTTTTTTC-AGCAACC  92

seq1  TGACTTGTCTTTTATTC-TAGGGAAACTGAACTAGCTCAGCTTTTCGGTC  145
      ||||||||  ||||||| ||||||||||| |||||||||||||    |||
seq2  TGACTTGTTCTTTATTCTTAGGGAAACTG-ACTAGCTCAGCTT---CGTC  138

seq1  AGAATCA-GAATAGTTTCAATAATGAACCTTTAATTCTAGCACTCAAATA  194
      ||||||| ||| |||||| || ||||||  |||  |||||||||||||||
seq2  AGAATCAGGAAAAGTTTCCATTATGAAC--TTA--TCTAGCACTCAAATA  184

seq1  ATGATCAGGACATCAAACATTTTTGTAATAATTTCAAGATTTCTCTTTAC  244
      |||||||||||||| |||||||||||||||||||||||||||||| ||||
seq2  ATGATCAGGACATC-AACATTTTTGTAATAATTTCAAGATTTCTC-TTAC  232

seq1  TTTAAAATATTGCATTCTATTTCTCCTAAATTCCTCAATTATGTTACTCA  294
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTAAAATATTGCAATCTATTTCTCCTAAATTCCTCAATTATGTTACTCA  282

seq1  TTTATATGATAGATATTCAGATAGATTGCCTTAAATATATTTTAGAAAAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGATAGATATTCAGATAGATTGCCTTAAATATATTTTAGAAAAT  332

seq1  GTGGGGCATCAATAAAGTGAACTCTAGAAAAGTAAAATGATTTTCTCCCT  394
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTGGGGCATCAATAAAGTGAACTCTAGAAAAGTAAAATGA-TTTCTCCCT  381

seq1  TGGTCTTAGTATTAGGAAAGACCAAGATTTCCAGACACAGCTGTGCTCAG  444
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGTCTTAGTATTAGGAAAGACCAAGA-TTCCAGACACAGCTGTGCTCAG  430

seq1  CAAAATTCAACTTATGTGCAGTGGGATATGTAGAGAGGAAAATCTTGCTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTCAACTTATGTGCAGTGGGATATGTAGAGAGGAAAATCTTGCTG  480

seq1  TATGTAATCTCATAAAATCACCAGTCATTTTTCAGTGGTATATGTCTGTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAATCTCATAAAATCACCAGTCATTTTTCAGTGGTATATGTCTGTG  530

seq1  ATGCTACTCGGTCCCAGAGCAATTTGCTCTCTTTCCAAACTGCACTTTCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTACTCGGTCCCAGAGCAATTTGCTCTCTTTCCAAACTGCACTTTCT  580

seq1  TTTGTAGTTGCCCAAGCCCATAAACTGCAAGCACATTACATTGCTTCTGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGTTGCCCAAGCCCATAAACTGCAAGCACATTACATTGCTTCTGA  630

seq1  AGGAGGAAATGCAATGTGCTTATCTCTAACATGACCATCTTGCCAAGTAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAAATGCAATGTGCTTATCTCTAACATGACCATCTTGCCAAGTAG  680

seq1  CACAAAATGGGAGGTGAGACTTTGTTTTCAGATTAATCTCTGACCCTTTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAATGGGAGGTGAGACTTTGTTTTCAGATTAATCTCTGACCCTTTC  730

seq1  CTCTTTGCCTCCACAGTCTAACATCATTTCTCTGCATAAAGGAAATCGCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGCCTCCACAGTCTAACATCATTTCTCTGCATAAAGGAAATCGCT  780

seq1  GCTAGAGCATAGGTTTGTTGAACATCATCAGCTACATGTGTCTCTTTGCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGCATAGGTTTGTTGAACATCATCAGCTACATGTGTCTCTTTGCA  830

seq1  AAAATAAATATGCACATGTACAAATATACAGTGCTCCTTCATAAAATGAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATATGCACATGTACAAATATACAGTGCTCCTTCATAAAATGAA  880

seq1  AACATTACTATCTTGAAAACAAAATCCCGCTCTAGATGATCTTCTAAATC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTACTATCTTGAAAACAAAATCCCGCTCTAGATGATCTTCTAAATC  930

seq1  TATGATAGTATGTGGAATAAAAATAAAACTACAAAACAAGCTTTCATCAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATAGTATGTGGAATAAAAATAAAACTACAAAACAAGCTTTCATCAC  980

seq1  TATCACTTGCTTACCAGACCATTCTAATACTAAGTCCTAGAAACACAATA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTTGCTTACCAGACCATTCTAATACTAAGTCCTAGAAACACAATA  1030

seq1  CAAAGGCTTTGAAATAGCACTTTTCTGACCACAGTGCTTTTATGAAATAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCTTTGAAATAGCACTTTTCTGACCACAGTGCTTTTATGAAATAA  1080

seq1  GCATCAGAAATAAAACTCAATCAGGATACACTGGTGAAATATCAGTACTG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGAAATAAAACTCAATCAGGATACACTGGTGAAATATCAGTACTG  1130

seq1  AATGTTCAGGGCATCTAACTCTAACATTATGTATAATAATTTGTGATCAA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCAGGGCATCTAACTCTAACATTATGTATAATAATTTGTGATCAA  1180

seq1  CCCTAAAGTCCATGACTTATAAAAATGTCTAACTTCCATGAGAATCTGAG  1244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAGTCCATGACTTATAAAAATGTCTAACTTCCATGAGAATCTGAG  1230

seq1  CTGAATGCTTAGTACACATTGCACACTTCAGTGAATTC  1282
      ||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGCTTAGTACACATTGCACACTTCAGTGAATTC  1268

seq1: chr8_33777438_33778366
seq2: B6Ng01-072C17.g_66_992

seq1  GAATTCAAGGCCAGCCTTGGCAAGTCAGTGAGAGCTGATCTCAAAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCCTTGGCAAGTCAGTGAGAGCTGATCTCAAAATAAA  50

seq1  AAGTAAAAAGTAGAGGCAAAGGGCAGAGCTTGCATGAGGGTCTGAGTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAAAGTAGAGGCAAAGGGCAGAGCTTGCATGAGGGTCTGAGTTTA  100

seq1  AATTGTTCCACCAACAATAAAGTAAGTAATTTGAAAAATAAATAGGGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTCCACCAACAATAAAGTAAGTAATTTGAAAAATAAATAGGGCTC  150

seq1  AAAAAGAACCACAAGTTCTGGGGGACTAAAGCTTTTGATAAGAAAATCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAACCACAAGTTCTGGGGGACTAAAGCTTTTGATAAGAAAATCAT  200

seq1  TAGCATACCAATGATCTATGTTTTGTTTCCAATAATATTAGGTTTGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATACCAATGATCTATGTTTTGTTTCCAATAATATTAGGTTTGAAAA  250

seq1  CCATGACATAATTACCTAGCCACCTTCTCCTATTACATGCATCCAGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACATAATTACCTAGCCACCTTCTCCTATTACATGCATCCAGAACT  300

seq1  TGAGAGATCCATTAGGTGGCACTCATCTTTCTCCTTTACAGAAGTTATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGATCCATTAGGTGGCACTCATCTTTCTCCTTTACAGAAGTTATAC  350

seq1  CTAAACAGCCATTGGCATCTTCGGTCTCTATACTTCCATTTCTATATAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAGCCATTGGCATCTTCGGTCTCTATACTTCCATTTCTATATAGG  400

seq1  CATGTTGATTCTATGACCAAACGATTTAATGAATGCTACGCACACTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGATTCTATGACCAAACGATTTAATGAATGCTACGCACACTCCAG  450

seq1  TGAAGTCTGCTTGGCAGGCCAAGAGGCCTGGAAGCACTCATGAGGTAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCTGCTTGGCAGGCCAAGAGGCCTGGAAGCACTCATGAGGTAGGG  500

seq1  AGTTTCAAGGAAACTCAATCTCCTGGAACCAGGCATTCTCATAACCCGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAAGGAAACTCAATCTCCTGGAACCAGGCATTCTCATAACCCGTA  550

seq1  TACTCATACCCTATCCCCGCGTTAGTCTGGTGTATGGATCCACATGCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATACCCTATCCCCGCGTTAGTCTGGTGTATGGATCCACATGCTCT  600

seq1  CTTTTAGTATTATTTTATTATAAGTGCCTTTAAAGATTGAATTTTGACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGTATTATTTTATTATAAGTGCCTTTAAAGATTGAATTTTGACAT  650

seq1  AGGTAAGCCTCCATCAGTGTTCCAACATCCTAGAAAACCCTTGAAGCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGCCTCCATCAGTGTTCCAACATCCTAGAAAACCCTTGAAGCCAA  700

seq1  CGAGCTTGGAATTCAGTAGGAATTCAGTGAGAAGGTTATCAATTCAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCTTGGAATTCAGTAGGAATTCAGTGAGAAGGTTATCAATTCAATAA  750

seq1  CATTCAAATTTACTTCTAGTAGAGATGGTGAAGCTAATTAGGCATTACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAATTTACTTCTAGTAGAGATGGTGAAGCTAATTAGGCATTACAA  800

seq1  AGAACGGAATAGCTCAGGGCTGGTCTGCAGAGTGTTTACTTGGGACAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGGAATAGCTCAGGGCTGGTCTGCAGAGTGTTTACTTGGGACAATA  850

seq1  GCCAGCCTTACCCAGACAAGGGAATTCACAATGGCCTAGTGAATAGGTGG  900
      |||||||||||||||||||||||||||||||||||||||||| |  ||||
seq2  GCCAGCCTTACCCAGACAAGGGAATTCACAATGGCCTAGTGATT--GTGG  898

seq1  GTTTACCATGAAAGAGTTAGGGAATCCCC  929
      |||||||||||||||||||||||||||||
seq2  GTTTACCATGAAAGAGTTAGGGAATCCCC  927