BAC Information

Click to search

BAC

Clone NameB6Ng01-072F22
Chromosome8 (Build37)
Map Location 108,875,915 - 108,877,003
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3
Downstream geneZfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072F22.bB6Ng01-072F22.g
ACCDH889806DH889807
length1,2581,091
definitionDH889806|Mus musculus domesticus DNA, BAC clone: B6Ng01-072F22, 5' end.DH889807|Mus musculus domesticus DNA, BAC clone: B6Ng01-072F22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcatctgcttcagagctactaagagctggcttcctgagctcat
ctagtgacgagtatctcctagagacctccgctaatcgatcttttttcttt
tctttttttcctctttttcttctaatctctctccaggtattcctacctaa
ccttaacttttcctcgggttcaagacccttggaaaggcctgtatacttat
tttgtgtaccatatttcctctttgttcctactctctctccccactttact
tctgatagcttgtcctgaacttcatccagaatccgccctgccttaaccac
ttgataacatgtgaaaaggaacaaaagggcttctaacactagaaaaaatt
caaggccaaacattttccactttacttctgatagactgtcttgaatttcc
ttagaaagttcaaggccaggcttacctcgtaaagctatactcactggtac
tctcgttccccagctgaaaagttctgaattcatacagttgaatccttctt
aacagtctgctttacgggaacctttattaccgcgacccgcagttctggtt
ctggaatgagggatcttccttgcgccagtcccgagttttttctcgtcccg
gaattcggcaccaattgttattagacgcgttctcacgcccggccaggaag
aacaccacagaccagaatcttctgcggcaaagctttattgcttacatctt
caggagccagagtgcaagaagcaagagagagagaaaacgaaaccccgtcc
cttttttaggagagttatatttcgcctaggacgtgtcactccctgattgg
ctgcagcccatcggccgagttgacgtcacggggaaggcagagcacatgga
gtggagaaccaccctcggcatatgcgcagattatttgtttaccacttaga
acacagctgtcagcgcggcgaatgtgggcgcggctcccaacaacatatta
ccggaagatccagcaatacctcagaagaagttccaactggtaataagaac
acatgcttccactatgttcataacaggcttattttataatagccagaagc
tggaaagactcagatgttcctccacagaagatggatacagaaaaatgtgg
ttacattaacaatggaagaacttactacctcagctataaaacagtggatt
tatgaattcttggacattggagtatcgggagaaatcatctcttatgagtt
accatccaagaagtctttaatagatcctgttagtggatattagctcggaa
cacttgac
gaattctttggaagactcatggctcctgccaacctcttacaatgttatca
gtgtttcctgtcatcagtgctaacctgtctcccagaacacaggagaaggc
tcaacatgtggttctgcaatgtcttagtcagggtttctattcctggacaa
acaccatgaccaagaagcaagttggggaggaaagggtttattcagcttac
aattccatactgctgttcatcaccaaaggaagtcaggactggaactcaag
caggtccggaagcaggagctgatgcagaggatatggagggatgttactta
ctggcttgcttcccctggcttgctcagcttgctttcctatagaacccaag
actaccagcccagggatggcaccacccacaatgggccctcctcccttgat
caccaactgagaaaatgccccacagctggatctcatggaggcacttcccc
aactgaagctcctttctctgtgataactccagcctgtgtcaagttgacac
acataagcagtatgtgcagtttgcatactccattctagtccttgaatgtc
tagcctctactctctttaacctctgaagaactttctagaagccccccttt
tttttctagaagaccttgcagctaaatttgtacctacagttatgcaaggt
atactgtaatccttcccttactgctgatagggtcttgtatagaaggcagt
tttgtttcatattattgttttgttttgttttgttttgttgtgggtttttt
ttttttttcagaatctgttctctccaggcctcaggaccctcaggtcagag
tagctttgcctagctctttatttagacaccccaaggagcagacggccatc
ctacatcattactgccggggtatggtcagatgatccatgaagatgaatac
cataccatgttattttaggactaccagcagtcagagagatgtcatcattc
ttagcttgttatcctataagattttgtggaactctctaaaaagccactat
taccaggcttcgagattattccacgatgtctgaaaactgggtgtgtgcgt
gatttattcaaagagagggacacttaaccttccagggtgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108875915_108877003
seq2: B6Ng01-072F22.g_65_1155

seq1  GAATTCTTTGGAAGACTCATGGCTCCTGCCAACCTCTTACAATGTTATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGAAGACTCATGGCTCCTGCCAACCTCTTACAATGTTATCA  50

seq1  GTGTTTCCTGTCATCAGTGCTAACCTGTCTCCCAGAACACAGGAGAAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCCTGTCATCAGTGCTAACCTGTCTCCCAGAACACAGGAGAAGGC  100

seq1  TCAACATGTGGTTCTGCAATGTCTTAGTCAGGGTTTCTATTCCTGGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATGTGGTTCTGCAATGTCTTAGTCAGGGTTTCTATTCCTGGACAA  150

seq1  ACACCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTAC  200

seq1  AATTCCATACTGCTGTTCATCACCAAAGGAAGTCAGGACTGGAACTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCATACTGCTGTTCATCACCAAAGGAAGTCAGGACTGGAACTCAAG  250

seq1  CAGGTCCGGAAGCAGGAGCTGATGCAGAGGATATGGAGGGATGTTACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCGGAAGCAGGAGCTGATGCAGAGGATATGGAGGGATGTTACTTA  300

seq1  CTGGCTTGCTTCCCCTGGCTTGCTCAGCTTGCTTTCCTATAGAACCCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTGCTTCCCCTGGCTTGCTCAGCTTGCTTTCCTATAGAACCCAAG  350

seq1  ACTACCAGCCCAGGGATGGCACCACCCACAATGGGCCCTCCTCCCTTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCAGCCCAGGGATGGCACCACCCACAATGGGCCCTCCTCCCTTGAT  400

seq1  CACCAACTGAGAAAATGCCCCACAGCTGGATCTCATGGAGGCACTTCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACTGAGAAAATGCCCCACAGCTGGATCTCATGGAGGCACTTCCCC  450

seq1  AACTGAAGCTCCTTTCTCTGTGATAACTCCAGCCTGTGTCAAGTTGACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAGCTCCTTTCTCTGTGATAACTCCAGCCTGTGTCAAGTTGACAC  500

seq1  ACATAAGCAGTATGTGCAGTTTGCATACTCCATTCTAGTCCTTGAATGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGCAGTATGTGCAGTTTGCATACTCCATTCTAGTCCTTGAATGTC  550

seq1  TAGCCTCTACTCTCTTTAACCTCTGAAGAACTTTCTAGAAGCCCCCCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCTACTCTCTTTAACCTCTGAAGAACTTTCTAGAAGCCCCCCTTT  600

seq1  TTTTTCTAGAAGACCTTGCAGCTAAATTTGTACCTACAGTTATGCAAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTAGAAGACCTTGCAGCTAAATTTGTACCTACAGTTATGCAAGGT  650

seq1  ATACTGTAATCCTTCCCTTACTGCTGATAGGGTCTTGTATAGAAGGCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTAATCCTTCCCTTACTGCTGATAGGGTCTTGTATAGAAGGCAGT  700

seq1  TTTGTTTCATATTATTGTTTTGTTTTGTTTTGTTTTGTTGTGGG-TTTTT  749
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTGTTTCATATTATTGTTTTGTTTTGTTTTGTTTTGTTGTGGGTTTTTT  750

seq1  TTTTTTTTCAGAATCTGTTCTCTCCAGGCCTCAGGACCCTCAGGTCAGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCAGAATCTGTTCTCTCCAGGCCTCAGGACCCTCAGGTCAGAG  800

seq1  TAGCTTTGCCTAGCTCTTTATTTAGACACCCC-AGGAGCAGACGGCCA-C  847
      |||||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  TAGCTTTGCCTAGCTCTTTATTTAGACACCCCAAGGAGCAGACGGCCATC  850

seq1  CCACATCATTACTGCCGGGGTATGGTCAGATGATCCATGAAGAATGAATA  897
      | |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTACATCATTACTGCCGGGGTATGGTCAGATGATCCATGAAG-ATGAATA  899

seq1  GCCATACCATGTTATTTTAGGACAACAAGCAGTCAGAGAGATGTCATCAT  947
       |||||||||||||||||||||| || |||||||||||||||||||||||
seq2  -CCATACCATGTTATTTTAGGACTACCAGCAGTCAGAGAGATGTCATCAT  948

seq1  TCTTAGCTTGTTTAATCTTTTAA-ATTTTGTGGAA--CTCTAAAAAGGCA  994
      ||||||||||||  ||| | ||| |||||||||||  |||||||||| ||
seq2  TCTTAGCTTGTT--ATCCTATAAGATTTTGTGGAACTCTCTAAAAAGCCA  996

seq1  CAAATTACAAGGC-TCGAGATTATTCACAGATGTCTG-AGACCGGTTGTG  1042
      |  ||||| |||| ||||||||||||   |||||||| | || || ||||
seq2  C-TATTACCAGGCTTCGAGATTATTCCACGATGTCTGAAAACTGGGTGTG  1045

seq1  GGCGTGA-TTATTCAATGAAGGGGTCACTTAACCTTCCCAGGGGTGCC  1089
       |||||| |||||||| ||  ||| |||||||||||||   |||||||
seq2  TGCGTGATTTATTCAAAGAGAGGGACACTTAACCTTCC--AGGGTGCC  1091