BAC Information

Click to search

BAC

Clone NameB6Ng01-072K08
Chromosome8 (Build37)
Map Location 111,119,646 - 111,261,919
singlet/doubletdoublet
Overlap geneAtbf1
Upstream geneLOC100041744, LOC668038
Downstream gene4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072K08.bB6Ng01-072K08.g
ACCDH890006DH890007
length1,101918
definitionDH890006|Mus musculus domesticus DNA, BAC clone: B6Ng01-072K08, 5' end.DH890007|Mus musculus domesticus DNA, BAC clone: B6Ng01-072K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,260,810 - 111,261,919)(111,119,646 - 111,120,565)
sequence
gaattcatggcgcttcctctagggcctcgttccacccatcttccttactc
ttccaggcaccacccgtggtgtctgggttagaggccacccagttccaaca
actgaagcttaactcttccttcacccttttgcgatgactgcaaacccacc
caggcaaagaagagacgctgaaagatctgggagattccccaggggcagaa
agaatgcagagccaaagcttaacaccagaggagcccgtggcagcttccaa
ctggtcacccctaaaccacggtgctttcattggggttcccttccagaaat
gggcttctgagctgacgattctaaggatctgagggcagaagccactgttc
ttcaaacagccactgtgcaaagagggcccaggagcagttccaaaaggatt
agagttcagctctgcctgatcccagcttcctagggtcacacagtccctgt
atcttgaacacagaccctatgggatgctcactaacacccccacacacaca
ccatacacacataccacccccccggcttgattcttctcttacctccccct
gccccgtgcccccatatcttggagaggcagcgctgctctgtctctctcac
atatgacttccccatgggtccattttaaggaaccaactgttttatgggga
gaggaggagaaagttcccacatgcagaaaacacgctccccagggaggatc
caagaggaggtcgttcagcgcttgctgaaagaactcaagcaagagaaggg
ttagaagatcgtgtccctccgttgtgcacagaaacaccttccttatggca
acttcactcccagtcctccctgaccagcagcagccattggcccagtcagg
ggacacacacacatacatacacacacacacacacacacacacagagagag
agagagagagagagagagagagagagagagagagagagatagagagagat
gggcacacatgtgctcacatgggtggaccccaaggtaggagaggggccca
ggcaaagaaggaactccatggggttttcaggactccaccttctggtattg
gatggatgtcaagtgtcagcaagtaattgctattggctctcaatagcagc
a
gaattctccatgttgtgtatgaaacctcagatcctcttccgtgcggggcc
cataagggcacttatcccaggacagcataaaggggaagagtctgcccaga
ttcccatgacaactcccttttcctgaaagtctctgacagacacttcctgg
ggagacaggaagtgcggacaggaagacaactgaggtcgtctcttcccatg
tccggctcgtcccacctcctagattcatctggtagctgacaacttcgggc
tgtgcttctgtgttttcgctggtcccgtccccagctgttctggagaacgt
tgggaggcaaccagtgtcgcttttgtcccctttttcccagaagccacggg
gatctcaaacatacctcagtaataaactgcgtaggagaaactcatgaggg
gaagagacgtcaaaaaaaaaaaaaaaaaaatgtgatataactgactccaa
agtaaaaataaatgataggctgacttcatgtttgtagttaacattatgac
gttaacagttattcagtaagtgttgcaggatcctgagtgtgtgccaagca
ctctgctagggttggccatagagtattgcacaatatagatatagtccctg
ctttctaaagccgacagtgtcaaaggatgccatcaggggagagactcacc
tcaccggagtaacctcgaagcaaacacgtacataccagttgtcaaatgca
gtgaagagaaaaaaaaaaaccagtttaagagatggcactgacagggcctg
actgaaatctcagtgaggaagggagtctcccagctcctagtgaatcccag
ctccactcaggacctgaagggagactagagtgtggctctctgctccacgc
tcacgcacttgaatgccctaccaaaatatttcactttgaaacctgaagat
cgtggggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_111260810_111261919
seq2: B6Ng01-072K08.b_43_1143 (reverse)

seq1  TGCTGCTTATTGAGAAGCCAATAGCAATTTACTTGCTGACACTTGACATC  50
      |||||| ||||||| |||||||||||| ||||||||||||||||||||||
seq2  TGCTGC-TATTGAG-AGCCAATAGCAA-TTACTTGCTGACACTTGACATC  47

seq1  AAATCCATTCCCAG-AGGTGGAGCTCCTGAAAACCACCATGGAGTTCCCT  99
        ||||| | |||| |||||||| ||||||||||| |||||||||| |||
seq2  -CATCCAATACCAGAAGGTGGAG-TCCTGAAAACC-CCATGGAGTT-CCT  93

seq1  CCTTTGCCTGGGCCCCTCTCCTACCTTGGGGGTCCACCCATGTGAGCACA  149
       |||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCTTTGCCTGGGCCCCTCTCCTACCTT-GGGGTCCACCCATGTGAGCACA  142

seq1  TGTGTGCCCATTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  199
      |||||||||||   ||||||| ||||||||||||||||||||||||||||
seq2  TGTGTGCCCAT--CTCTCTCTATCTCTCTCTCTCTCTCTCTCTCTCTCTC  190

seq1  TCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTATGTATG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTATGTATG  240

seq1  TGTGTGTGTCCCCTGACTGGGCCAATGGCTGCTGCTGGTCAGGGAGGACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTCCCCTGACTGGGCCAATGGCTGCTGCTGGTCAGGGAGGACT  290

seq1  GGGAGTGAAGTTGCCATAAGGAAGGTGTTTCTGTGCACAACGGAGGGACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGAAGTTGCCATAAGGAAGGTGTTTCTGTGCACAACGGAGGGACA  340

seq1  CGATCTTCTAACCCTTCTCTTGCTTGAGTTCTTTCAGCAAGCGCTGAACG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCTTCTAACCCTTCTCTTGCTTGAGTTCTTTCAGCAAGCGCTGAACG  390

seq1  ACCTCCTCTTGGATCCTCCCTGGGGAGCGTGTTTTCTGCATGTGGGAACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTCTTGGATCCTCCCTGGGGAGCGTGTTTTCTGCATGTGGGAACT  440

seq1  TTCTCCTCCTCTCCCCATAAAACAGTTGGTTCCTTAAAATGGACCCATGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCCTCTCCCCATAAAACAGTTGGTTCCTTAAAATGGACCCATGG  490

seq1  GGAAGTCATATGTGAGAGAGACAGAGCAGCGCTGCCTCTCCAAGATATGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCATATGTGAGAGAGACAGAGCAGCGCTGCCTCTCCAAGATATGG  540

seq1  GGGCACGGGGCAGGGGGAGGTAAGAGAAGAATCAAGCCGGGGGGGTGGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACGGGGCAGGGGGAGGTAAGAGAAGAATCAAGCCGGGGGGGTGGTA  590

seq1  TGTGTGTATGGTGTGTGTGTGGGGGTGTTAGTGAGCATCCCATAGGGTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATGGTGTGTGTGTGGGGGTGTTAGTGAGCATCCCATAGGGTCT  640

seq1  GTGTTCAAGATACAGGGACTGTGTGACCCTAGGAAGCTGGGATCAGGCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAAGATACAGGGACTGTGTGACCCTAGGAAGCTGGGATCAGGCAG  690

seq1  AGCTGAACTCTAATCCTTTTGGAACTGCTCCTGGGCCCTCTTTGCACAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAACTCTAATCCTTTTGGAACTGCTCCTGGGCCCTCTTTGCACAGT  740

seq1  GGCTGTTTGAAGAACAGTGGCTTCTGCCCTCAGATCCTTAGAATCGTCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTTGAAGAACAGTGGCTTCTGCCCTCAGATCCTTAGAATCGTCAG  790

seq1  CTCAGAAGCCCATTTCTGGAAGGGAACCCCAATGAAAGCACCGTGGTTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAGCCCATTTCTGGAAGGGAACCCCAATGAAAGCACCGTGGTTTA  840

seq1  GGGGTGACCAGTTGGAAGCTGCCACGGGCTCCTCTGGTGTTAAGCTTTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGACCAGTTGGAAGCTGCCACGGGCTCCTCTGGTGTTAAGCTTTGG  890

seq1  CTCTGCATTCTTTCTGCCCCTGGGGAATCTCCCAGATCTTTCAGCGTCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCATTCTTTCTGCCCCTGGGGAATCTCCCAGATCTTTCAGCGTCTC  940

seq1  TTCTTTGCCTGGGTGGGTTTGCAGTCATCGCAAAAGGGTGAAGGAAGAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGCCTGGGTGGGTTTGCAGTCATCGCAAAAGGGTGAAGGAAGAGT  990

seq1  TAAGCTTCAGTTGTTGGAACTGGGTGGCCTCTAACCCAGACACCACGGGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTCAGTTGTTGGAACTGGGTGGCCTCTAACCCAGACACCACGGGT  1040

seq1  GGTGCCTGGAAGAGTAAGGAAGATGGGTGGAACGAGGCCCTAGAGGAAGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCTGGAAGAGTAAGGAAGATGGGTGGAACGAGGCCCTAGAGGAAGC  1090

seq1  GCCATGAATTC  1110
      |||||||||||
seq2  GCCATGAATTC  1101

seq1: chr8_111119646_111120565
seq2: B6Ng01-072K08.g_71_988

seq1  GAATTCTCCATGTTGTGTATGAAACCTCAGATCCTCTTCCGTGCGGGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATGTTGTGTATGAAACCTCAGATCCTCTTCCGTGCGGGGCC  50

seq1  CATAAGGGCACTTATCCCAGGACAGCATAAAGGGGAAGAGTCTGCCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGGCACTTATCCCAGGACAGCATAAAGGGGAAGAGTCTGCCCAGA  100

seq1  TTCCCATGACAACTCCCTTTTCCTGAAAGTCTCTGACAGACACTTCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATGACAACTCCCTTTTCCTGAAAGTCTCTGACAGACACTTCCTGG  150

seq1  GGAGACAGGAAGTGCGGACAGGAAGACAACTGAGGTCGTCTCTTCCCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAGGAAGTGCGGACAGGAAGACAACTGAGGTCGTCTCTTCCCATG  200

seq1  TCCGGCTCGTCCCACCTCCTAGATTCATCTGGTAGCTGACAACTTCGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGCTCGTCCCACCTCCTAGATTCATCTGGTAGCTGACAACTTCGGGC  250

seq1  TGTGCTTCTGTGTTTTCGCTGGTCCCGTCCCCAGCTGTTCTGGAGAACGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTCTGTGTTTTCGCTGGTCCCGTCCCCAGCTGTTCTGGAGAACGT  300

seq1  TGGGAGGCAACCAGTGTCGCTTTTGTCCCCTTTTTCCCAGAAGCCACGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCAACCAGTGTCGCTTTTGTCCCCTTTTTCCCAGAAGCCACGGG  350

seq1  GATCTCAAACATACCTCAGTAATAAACTGCGTAGGAGAAACTCATGAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCAAACATACCTCAGTAATAAACTGCGTAGGAGAAACTCATGAGGG  400

seq1  GAAGAGACGTCAAAAAAAAAAAAAAAAAAATGTGATATAACTGACTCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGACGTCAAAAAAAAAAAAAAAAAAATGTGATATAACTGACTCCAA  450

seq1  AGTAAAAATAAATGATAGGCTGACTTCATGTTTGTAGTTAACATTATGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAATAAATGATAGGCTGACTTCATGTTTGTAGTTAACATTATGAC  500

seq1  GTTAACAGTTATTCAGTAAGTGTTGCAGGATCCTGAGTGTGTGCCAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACAGTTATTCAGTAAGTGTTGCAGGATCCTGAGTGTGTGCCAAGCA  550

seq1  CTCTGCTAGGGTTGGCCATAGAGTATTGCACAATATAGATATAGTCCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTAGGGTTGGCCATAGAGTATTGCACAATATAGATATAGTCCCTG  600

seq1  CTTTCTAAAGCCGACAGTGTCAAAGGATGCCATCAGGGGAGAGACTCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAAAGCCGACAGTGTCAAAGGATGCCATCAGGGGAGAGACTCACC  650

seq1  TCACCGGAGTAACCTCGAAGCAAACACGTACATACCAGTTGTCAAATGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCGGAGTAACCTCGAAGCAAACACGTACATACCAGTTGTCAAATGCA  700

seq1  GTGAAGAGAAAAAAAAAAACCAGTTTAAGAGATGGCACTGACAGGGCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAGAAAAAAAAAAACCAGTTTAAGAGATGGCACTGACAGGGCCTG  750

seq1  ACTGAAATCTCAGTGAGGAAGGGAGTCTCCCAGCTCCTAGTGAATCCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATCTCAGTGAGGAAGGGAGTCTCCCAGCTCCTAGTGAATCCCAG  800

seq1  CTCCACTCAGGGACCTGAAGGGAGACTAGAGTGTGGCTCTCTGCTCCACG  850
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTCA-GGACCTGAAGGGAGACTAGAGTGTGGCTCTCTGCTCCACG  849

seq1  CTCACGCACTTGAATGCCCTACCAAAATATTTCACTTTGAAACCTGAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGCACTTGAATGCCCTACCAAAATATTTCACTTTGAAACCTGAAGA  899

seq1  GTCGTGGGGGGGGGGGGGGG  920
       |||||||||||||||||||
seq2  -TCGTGGGGGGGGGGGGGGG  918