BAC Information

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BAC

Clone NameB6Ng01-072K20
Chromosome8 (Build37)
Map Location 75,836,474 - 75,837,635
singlet/doubletsinglet
Overlap geneLarge
Upstream geneKlf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3
Downstream geneLOC100039001, LOC666134, Crry-ps, LOC666146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072K20.bB6Ng01-072K20.g
ACCDH890026DH890027
length1,2451,161
definitionDH890026|Mus musculus domesticus DNA, BAC clone: B6Ng01-072K20, 5' end.DH890027|Mus musculus domesticus DNA, BAC clone: B6Ng01-072K20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattgtttttatagctgagtagtactccattgtataaatggacca
cattatctgtatccattcctctgttgagtgacatctgggttcttttcagc
ttcttgctattataaataaggatcctatgaacatagtggagcatgtgtct
tgttatatgttggagcatctataggggatatgcccaggagtggtatgact
gggtcctcaggtagtactatgtctgcttttctgaggaaatgtcagactga
tttgcacagtagctgtgccagcttgcaaacccaccagcaataaaagagtg
ttcctttttctccacatccttgccagcatctgctgtcacctgaatttttt
atcttagccattctgactgatgtgaagtggaatctcagggttgttttgtt
ttgcatttctctgatgattaaggatgttaaacatttttaggtgcttctca
gccattcggtattcctcagttgagaattctttgtttaaatttgtacccca
tttttaatggggtcatttggttttctggagcccaaattcttgagttcttt
atatatgtactggatattagccccctatcatgtttaggattggtaaagat
ctttacccaatctgttggttgtcattttgtcttattggtactgtcctttg
ccttacagaagctttgcaatttcatgaagtcccatttgtcaattcttgat
cttacagcacaagccattgctgttctgttcaggaatttttcccctgtgcc
catatcttcaaggctttcccccactttctcctctataaatttcagtgtct
ttggttttatgtggaggtctttgatccacttagacttgagctttgtacaa
ggagataagaatggatcaattcacattcttcttcatgctaaccaccattg
gttgagccagcaccatttgttgcaaatgttgtcttctttccactggataa
ttctagcaccttttgtcaaagatcaagtgaccatggttgtggtgggttca
tttctgggttttcaattccattccatttatctacctatcccattgctcta
taatacagcctgaggtcgaacatggtaattcaccagaggttttattgaga
atagattgctatcctaggttttcatattcaatgataaaattgcttctact
cacggaactgagttggatttgtatggggattgcatgacttatgctccgga
tagacattacaattacttgccgatcctgaaaggagagggtaagct
gaattcatagacagcgggaaatggttactggttttgtgtcagctaaactc
ctcaggaaccagcaaatccactctaattccagatcaacaaatacgaagca
aaagcacaggagaagatggggaagatctagaaggcaaagtataaaatcag
atagccgttatcttttcctacacaaaaatctgtcttgaccatcatgacag
ttatatggcagagcagaaataagcaacacacccttagacttgaccctgac
tccagtagtgacctcattaagtgggcatttgagccgtacagtctcttcga
acatgtgagcagaaagagggcttagtgccttgcccagcacaaggcagaca
tgtgatctatgctatccttggttattattcaccaagtctccacctaagag
ttcaacatagtgctggggaaaataaaaggcagctgccctacccctttggc
actatcatggccaccacctcaaactgcatcacttatgttcttgaacctga
attcccccgtgaaagcaccctagatattcagtaaggactagatgttaagc
agagagcatccaaagtcctcacccagctcccgctggaaactggaagagga
gccagagcagagtgaaggaggcagggtcaagagctgactgacctaactaa
gaaaacaagcctcttccatgaaagccaaactgttttaacaaaactggccc
actcacctctgccccagctgctcagggaagcatgaaggcccttaaggaaa
gggaattggccacctttcacagccaagaggacaagatactagcagaaaga
atctacactgctggagcgctgctgctggcttcatgtttagtgttattatt
cctaccctgtccacaaaagcacttggatcagcccgagtacttcttttttt
actcctccagcactccatggaggcacgcctagataagtgagcatgagctc
ttcctggacaaaagagtcacatggtagggcttatttgtgttgacttttct
caacagtgtcaaaggaccactaggctggaaggcactaaacagaatgcata
tctacctggggactggctggaaagcttgcatgttagaagtagtataatct
gggttcagctagggaacctcaccccacacaaagtcctagggagtgtgcca
agaaaagcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_75836474_75837635
seq2: B6Ng01-072K20.g_66_1226

seq1  GAATTCATAGACAGCGGGAAATGGTTACTGGTTTTGTGTCAGCTAAACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGACAGCGGGAAATGGTTACTGGTTTTGTGTCAGCTAAACTC  50

seq1  CTCAGGAACCAGCAAATCCACTCTAATTCCAGATCAACAAATACGAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAACCAGCAAATCCACTCTAATTCCAGATCAACAAATACGAAGCA  100

seq1  AAAGCACAGGAGAAGATGGGGAAGATCTAGAAGGCAAAGTATAAAATCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACAGGAGAAGATGGGGAAGATCTAGAAGGCAAAGTATAAAATCAG  150

seq1  ATAGCCGTTATCTTTTCCTACACAAAAATCTGTCTTGACCATCATGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCGTTATCTTTTCCTACACAAAAATCTGTCTTGACCATCATGACAG  200

seq1  TTATATGGCAGAGCAGAAATAAGCAACACACCCTTAGACTTGACCCTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGGCAGAGCAGAAATAAGCAACACACCCTTAGACTTGACCCTGAC  250

seq1  TCCAGTAGTGACCTCATTAAGTGGGCATTTGAGCCGTACAGTCTCTTCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTAGTGACCTCATTAAGTGGGCATTTGAGCCGTACAGTCTCTTCGA  300

seq1  ACATGTGAGCAGAAAGAGGGCTTAGTGCCTTGCCCAGCACAAGGCAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGAGCAGAAAGAGGGCTTAGTGCCTTGCCCAGCACAAGGCAGACA  350

seq1  TGTGATCTATGCTATCCTTGGTTATTATTCACCAAGTCTCCACCTAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCTATGCTATCCTTGGTTATTATTCACCAAGTCTCCACCTAAGAG  400

seq1  TTCAACATAGTGCTGGGGAAAATAAAAGGCAGCTGCCCTACCCCTTTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATAGTGCTGGGGAAAATAAAAGGCAGCTGCCCTACCCCTTTGGC  450

seq1  ACTATCATGGCCACCACCTCAAACTGCATCACTTATGTTCTTGAACCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCATGGCCACCACCTCAAACTGCATCACTTATGTTCTTGAACCTGA  500

seq1  ATTCCCCCGTGAAAGCACCCTAGATATTCAGTAAGGACTAGATGTTAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCCGTGAAAGCACCCTAGATATTCAGTAAGGACTAGATGTTAAGC  550

seq1  AGAGAGCATCCAAAGTCCTCACCCAGCTCCCGCTGGAAACTGGAAGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCATCCAAAGTCCTCACCCAGCTCCCGCTGGAAACTGGAAGAGGA  600

seq1  GCCAGAGCAGAGTGAAGGAGGCAGGGTCAAGAGCTGACTGACCTAACTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGCAGAGTGAAGGAGGCAGGGTCAAGAGCTGACTGACCTAACTAA  650

seq1  GAAAACAAGCCTCTTCCATGAAAGCCAAACTGTTTTAACAAAACTGGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAGCCTCTTCCATGAAAGCCAAACTGTTTTAACAAAACTGGCCC  700

seq1  ACTCACCTCTGCCCCAGCTGCTCAGGGAAGCATGAAGGCCCTTAAGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCTCTGCCCCAGCTGCTCAGGGAAGCATGAAGGCCCTTAAGGAAA  750

seq1  GGGAATTGGCCACCTTTCACAGCCAAGAGGACAAGATACTAGCAGAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTGGCCACCTTTCACAGCCAAGAGGACAAGATACTAGCAGAAAGA  800

seq1  ATCTACACTGCTGGAGCGCTGCTGCTGGCTTCATGTTTAGTGTTATTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACACTGCTGGAGCGCTGCTGCTGGCTTCATGTTTAGTGTTATTATT  850

seq1  CCTACCCTGTCCACAAAAAGCACTTGGATCAGCCCGAGTACTTCTTTTTT  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCTACCCTGTCCAC-AAAAGCACTTGGATCAGCCCGAGTACTTCTTTTTT  899

seq1  TAACTCCTCCAGCACTCCATGGAGGCACGCCTAGATAAGTGAGCATGAGC  950
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-ACTCCTCCAGCACTCCATGGAGGCACGCCTAGATAAGTGAGCATGAGC  948

seq1  TCTTCCTGGACAAAAGAGTCACATGGTAGGGCTTATTTGTGTTGACTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGGACAAAAGAGTCACATGGTAGGGCTTATTTGTGTTGACTTTT  998

seq1  CTCAACAGTGTCAAAGGGAACACTAGGCTGGAAAGGCACT-AACAG-ATG  1048
      ||||||||||||||| ||| ||||||||||| |||||||| ||||| |||
seq2  CTCAACAGTGTCAAA-GGACCACTAGGCTGG-AAGGCACTAAACAGAATG  1046

seq1  CATATCTACCTGGGGACCTGGCTGAGAAGCTAGCATG-TAGAAGGTAGTA  1097
      |||||||||||||||| |||||||  ||||| ||||| ||||| ||||||
seq2  CATATCTACCTGGGGA-CTGGCTGGAAAGCTTGCATGTTAGAA-GTAGTA  1094

seq1  ATATCTGGGTCTCAGCTAGGGAACCTCA-CCCACACAAAGCCCCAGGGA-  1145
        |||||||| ||||||||||||||||| ||||||||||| || ||||| 
seq2  TAATCTGGGT-TCAGCTAGGGAACCTCACCCCACACAAAGTCCTAGGGAG  1143

seq1  -GTGGCAAGGAAAGCATG  1162
       ||| |||| ||||||||
seq2  TGTGCCAAGAAAAGCATG  1161