BAC Information

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BAC

Clone NameB6Ng01-073A05
Chromosome8 (Build37)
Map Location 19,736,301 - 19,789,727
singlet/doubletdoublet
Overlap gene4930467E23Rik, LOC100041567
Upstream geneMcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730
Downstream geneLOC547150, LOC100040599, EG665822, 6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073A05.bB6Ng01-073A05.g
ACCDH890266DH890267
length1,0171,037
definitionDH890266|Mus musculus domesticus DNA, BAC clone: B6Ng01-073A05, 5' end.DH890267|Mus musculus domesticus DNA, BAC clone: B6Ng01-073A05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,736,301 - 19,737,201)(19,788,680 - 19,789,727)
sequence
gaattcaacgttttgtctagtcttgttggcccatggattgcatcccagaa
cttgggaaggaggacatgaacagatttctgtgagttaaggccaacatgct
ccatagagcagttttcagaccagcatggatacatagtgagatcctgattc
aaaaaaatgttgtttgtaaacatctaaagtaagatacagaagggacacaa
atataaagtacttaaaacacttgctaaatatttttcttatgaatagcaca
ataatgctaactttaaaatctatgtcacagtactggatcgtcagctcaga
gaactgaagtgaagcatgtcaggttcaatgaaggtaaggtttttatagtg
aatataaatatggtatatagtagccagtcctattaccctaaagaagagta
gagattaagcttctttcccactgattccagaaaaggcagctcaactagca
gaaaggaatccaaatgcagacaacagtgtgaagcggtcctcccttcagtt
tatagagaacccacatgaagaccaagctgcacatctgctacatatgggga
gggggtctatgtgcagcccatgcatgctctttgattggtggttcaatctc
tgtgagccctcatgggcccaggctacttgattgtgtaggttttcttgtgg
tgtccctgacccctcagtcacaatgttctcctttgagttcaatgtccttc
cccaactcttccacaagactctccaaactccccttgatgtttgtctgtgg
ttctgtacatttgtttccatcctctgctggatgaagcctcttagaagtgt
tatcctaggctcctgtctacaagcatagcagaacatcattaatggtgtca
aagcctggctctctcccacagtgtgggtctcaaattgggccagttattgg
gtggcgattcccttaatctctgttccattgtaatccctgaatatcttgta
gtaggataaattttgggttgatgttttgtgagggcattggtattcccctc
tttccactggaagtccc
gaattcattgaaatctggagaatggtaaatattcagaaagacacattttt
taaagttataaaaagtccattaattttaaccacatattttatcacatagt
catatccccatcagataattacagcatttacccagtgtataaactatctt
attttacctctacttttttttaatgttctgttttaggctcagtgtatatt
tcatacttaagtcacagttgagagcagccatacttttactagctaagtag
ccacgagtagacaaggaagaataatcagaagaccataaaccttttcatag
aggagggtgatcaaagactttctggtgataacaatcctctgagtgaagaa
ctagtgaattaagactgctgtcgttagttagttagttagttagttagaca
actatttatttgggaaaacattcagatggcctttgaaatcagcagatcct
aaaggagacactgggaaggtagatggagggaaagatgcttatgttcttag
cctcagtagaagggctggattgggaacaagatctatgttttaaaaacttt
gaatgtgtgaaatcactgaaagtcccaaaattcttccactagtagaatga
ataaatgaaaccatgatgaaatgaaaccatgtctgcttcaggttgggaga
ttatgctacactgtaaattttcagaaatccagaattagatgacaaggtaa
agatgctcaactattaagggtgtttttttttttttttggacttgttttgt
tttgttttgttttttcatttcattagaaaaggggaaacaaatataggagc
tgatggctaacatttaaaactagatcaagtgagcctcaaacccccctact
ctctggagagagaaagaaaatatcaggagtgaaaattattttcataggat
tgtgtctcctgcattaaatatagtttccattcatgtcatatctatgggaa
caaatcctcagatcatgaagggaatatatcttaagcaatctagagggctc
tttaagagtcgaggtggaagaaataaaagaactgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_19736301_19737201
seq2: B6Ng01-073A05.b_44_944

seq1  GAATTCAACGTTTTGTCTAGTCTTGTTGGCCCATGGATTGCATCCCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACGTTTTGTCTAGTCTTGTTGGCCCATGGATTGCATCCCAGAA  50

seq1  CTTGGGAAGGAGGACATGAACAGATTTCTGTGAGTTAAGGCCAACATGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAAGGAGGACATGAACAGATTTCTGTGAGTTAAGGCCAACATGCT  100

seq1  CCATAGAGCAGTTTTCAGACCAGCATGGATACATAGTGAGATCCTGATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGAGCAGTTTTCAGACCAGCATGGATACATAGTGAGATCCTGATTC  150

seq1  AAAAAAATGTTGTTTGTAAACATCTAAAGTAAGATACAGAAGGGACACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATGTTGTTTGTAAACATCTAAAGTAAGATACAGAAGGGACACAA  200

seq1  ATATAAAGTACTTAAAACACTTGCTAAATATTTTTCTTATGAATAGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGTACTTAAAACACTTGCTAAATATTTTTCTTATGAATAGCACA  250

seq1  ATAATGCTAACTTTAAAATCTATGTCACAGTACTGGATCGTCAGCTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGCTAACTTTAAAATCTATGTCACAGTACTGGATCGTCAGCTCAGA  300

seq1  GAACTGAAGTGAAGCATGTCAGGTTCAATGAAGGTAAGGTTTTTATAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAAGTGAAGCATGTCAGGTTCAATGAAGGTAAGGTTTTTATAGTG  350

seq1  AATATAAATATGGTATATAGTAGCCAGTCCTATTACCCTAAAGAAGAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAATATGGTATATAGTAGCCAGTCCTATTACCCTAAAGAAGAGTA  400

seq1  GAGATTAAGCTTCTTTCCCACTGATTCCAGAAAAGGCAGCTCAACTAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTAAGCTTCTTTCCCACTGATTCCAGAAAAGGCAGCTCAACTAGCA  450

seq1  GAAAGGAATCCAAATGCAGACAACAGTGTGAAGCGGTCCTCCCTTCAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAATCCAAATGCAGACAACAGTGTGAAGCGGTCCTCCCTTCAGTT  500

seq1  TATAGAGAACCCACATGAAGACCAAGCTGCACATCTGCTACATATGGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGAACCCACATGAAGACCAAGCTGCACATCTGCTACATATGGGGA  550

seq1  GGGGGTCTATGTGCAGCCCATGCATGCTCTTTGATTGGTGGTTCAATCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTCTATGTGCAGCCCATGCATGCTCTTTGATTGGTGGTTCAATCTC  600

seq1  TGTGAGCCCTCATGGGCCCAGGCTACTTGATTGTGTAGGTTTTCTTGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCCTCATGGGCCCAGGCTACTTGATTGTGTAGGTTTTCTTGTGG  650

seq1  TGTCCCTGACCCCTCAGTCACAATGTTCTCCTTTGAGTTCAATGTCCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTGACCCCTCAGTCACAATGTTCTCCTTTGAGTTCAATGTCCTTC  700

seq1  CCCAACTCTTCCACAAGACTCTCCAAACTCCCCTTGATGTTTGTCTGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTCTTCCACAAGACTCTCCAAACTCCCCTTGATGTTTGTCTGTGG  750

seq1  TTCTGTACATTTGTTTCCATCCTCTGCTGGATGAAGCCTCTTAGAAGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTACATTTGTTTCCATCCTCTGCTGGATGAAGCCTCTTAGAAGTGT  800

seq1  TATCCTAGGCTCCTGTCTACAAGCATAGCAGAACATCATTAATGGTGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTAGGCTCCTGTCTACAAGCATAGCAGAACATCATTAATGGTGTCA  850

seq1  AAGCCTGGCTCTCTCCCACAGTGTGGGTCTCAAATTGGGCCAGTTATTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGGCTCTCTCCCACAGTGTGGGTCTCAAATTGGGCCAGTTATTGG  900

seq1  G  901
      |
seq2  G  901

seq1: chr8_19788680_19789727
seq2: B6Ng01-073A05.g_68_1104 (reverse)

seq1  GAGCAGTATCTTTTATTTCTTCCACCTCTGACTCTTTAAAGAGCACTCTT  50
      ||||||| |||||||||||||||||||| ||||| ||||||||| ||| |
seq2  GAGCAGT-TCTTTTATTTCTTCCACCTC-GACTC-TTAAAGAGCCCTC-T  46

seq1  AGATTGCTTAAGATATATTTCCCTTCATGAATCTGAGGATTTTGTTTCCA  100
      ||||||||||||||||| ||||||||||| ||||||||| |||||| |||
seq2  AGATTGCTTAAGATATA-TTCCCTTCATG-ATCTGAGGA-TTTGTTCCCA  93

seq1  TAGATATGACATGAATGGAAAACTATATTTAATGCAGGAGACAACAATCC  150
      |||||||||||||||||| ||||||||||||||||||||||| |||||||
seq2  TAGATATGACATGAATGG-AAACTATATTTAATGCAGGAGAC-ACAATCC  141

seq1  TATGAAAATTAATTTTCACTTCCTGATATTTTCTTTCTCTCTCCAGAGAG  200
      |||||||| |||||||||| ||||||||||||||||||||||||||||||
seq2  TATGAAAA-TAATTTTCAC-TCCTGATATTTTCTTTCTCTCTCCAGAGAG  189

seq1  TAGGGGGGTTTGAGGCTCACTTGATCTAGTTTTAAATGTTAGCCATCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGGGTTTGAGGCTCACTTGATCTAGTTTTAAATGTTAGCCATCAGC  239

seq1  TCCTATATTTGTTTCCCCTTTTCTAATGAAATGAAAAAACAAAACAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATATTTGTTTCCCCTTTTCTAATGAAATGAAAAAACAAAACAAAAC  289

seq1  AAAACAAGTCCAAAAAAAAAAAAAAACACCCTTAATAGTTGAGCATCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGTCCAAAAAAAAAAAAAAACACCCTTAATAGTTGAGCATCTTT  339

seq1  ACCTTGTCATCTAATTCTGGATTTCTGAAAATTTACAGTGTAGCATAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTCATCTAATTCTGGATTTCTGAAAATTTACAGTGTAGCATAATC  389

seq1  TCCCAACCTGAAGCAGACATGGTTTCATTTCATCATGGTTTCATTTATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACCTGAAGCAGACATGGTTTCATTTCATCATGGTTTCATTTATTC  439

seq1  ATTCTACTAGTGGAAGAATTTTGGGACTTTCAGTGATTTCACACATTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACTAGTGGAAGAATTTTGGGACTTTCAGTGATTTCACACATTCAA  489

seq1  AGTTTTTAAAACATAGATCTTGTTCCCAATCCAGCCCTTCTACTGAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTAAAACATAGATCTTGTTCCCAATCCAGCCCTTCTACTGAGGCT  539

seq1  AAGAACATAAGCATCTTTCCCTCCATCTACCTTCCCAGTGTCTCCTTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATAAGCATCTTTCCCTCCATCTACCTTCCCAGTGTCTCCTTTAG  589

seq1  GATCTGCTGATTTCAAAGGCCATCTGAATGTTTTCCCAAATAAATAGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCTGATTTCAAAGGCCATCTGAATGTTTTCCCAAATAAATAGTTG  639

seq1  TCTAACTAACTAACTAACTAACTAACGACAGCAGTCTTAATTCACTAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTAACTAACTAACTAACTAACGACAGCAGTCTTAATTCACTAGTT  689

seq1  CTTCACTCAGAGGATTGTTATCACCAGAAAGTCTTTGATCACCCTCCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTCAGAGGATTGTTATCACCAGAAAGTCTTTGATCACCCTCCTCT  739

seq1  ATGAAAAGGTTTATGGTCTTCTGATTATTCTTCCTTGTCTACTCGTGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGGTTTATGGTCTTCTGATTATTCTTCCTTGTCTACTCGTGGCT  789

seq1  ACTTAGCTAGTAAAAGTATGGCTGCTCTCAACTGTGACTTAAGTATGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCTAGTAAAAGTATGGCTGCTCTCAACTGTGACTTAAGTATGAAA  839

seq1  TATACACTGAGCCTAAAACAGAACATTAAAAAAAAGTAGAGGTAAAATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACTGAGCCTAAAACAGAACATTAAAAAAAAGTAGAGGTAAAATAA  889

seq1  GATAGTTTATACACTGGGTAAATGCTGTAATTATCTGATGGGGATATGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTTTATACACTGGGTAAATGCTGTAATTATCTGATGGGGATATGAC  939

seq1  TATGTGATAAAATATGTGGTTAAAATTAATGGACTTTTTATAACTTTAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGATAAAATATGTGGTTAAAATTAATGGACTTTTTATAACTTTAAA  989

seq1  AAATGTGTCTTTCTGAATATTTACCATTCTCCAGATTTCAATGAATTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTCTTTCTGAATATTTACCATTCTCCAGATTTCAATGAATTC  1037