BAC Information

Click to search

BAC

Clone NameB6Ng01-073C20
Chromosome8 (Build37)
Map Location 102,805,759 - 102,877,888
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh8, A330008L17Rik, LOC667531, LOC100042069, LOC436054, LOC100042078
Downstream geneLOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073C20.bB6Ng01-073C20.g
ACCDH890386DH890387
length7991,111
definitionDH890386|Mus musculus domesticus DNA, BAC clone: B6Ng01-073C20, 5' end.DH890387|Mus musculus domesticus DNA, BAC clone: B6Ng01-073C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,805,759 - 102,806,555)(102,876,770 - 102,877,888)
sequence
gaattcaataactgaaaattatttaagaagtaggtgattgtatggtattg
tgacatacacacacaaacacacacacacagaggaataacaagtaggtgtg
taaattactcacagttgctagctgataatcttttaatgcatcaagcaaga
gaaaactgttacattttatgactgtacattatatttaagataccatgatg
gtatgtatcattgtggatttatgcactatttcacttattttcagcagaat
tcacacttacatactaatcatgcaaaaaagatggggtaagtgggtaaaac
ctagtttcattatttaaatgtcttaatcccaagccttgagtatttccata
ttagattccacccctttatcttctgaaaacaaaggaaactgctctgatgg
ctttacaccatctccatgatggaacatctgagagtccattacaccagatt
ctgttacaggaggctctgtgatccacggaacatttatttcagcttcccag
agattccagtaagctgcttatatttctgtttgggtagaagattttgttgg
gagggcaactgatagattatcttacctggttctactagcagttggtagta
gaaatgatagacaattatttccaaattcatcacataaaggaaaattacaa
aacaaatgttaagattctcctgttttcattaatggcacactgtttgttgc
atttactggtattttccaaatctctaaccctgatttcttatttaccaaga
aaaaataatcatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtc
gaattcaaattatagtattgcaaacattggaatataaaatgtgtttccct
tggtagctgcaaggaaaataggttttttatttggtacaaatgatgtggat
atgcaaaatcatgtgagaaaataatttaaatgttttgctacaaaattcaa
caaatgacacaagagcatctctcactcaaaactggaaaaatatggaaata
attagcaagtggcaggagtagttacttatcaacctatctttatttgaaat
ataaatgcaatgaacttttcaaccaaaagttagatactggcagaattcat
ttaataaaaaagtgatagaaccaagtgctgtgtagaagaaaataagttag
actaggtaacacaagcattgagataaaaatatcataaaatgatattagca
tcctaataataatcacaggaaaacatttacactattatattttattaaaa
atagtttattataatctatatttgaataaaaaactttaaaatcaatagag
gtcagttttaattaacaaaagcttatgatatagaaaacacacttacaaat
atggaaacatgtagttgtagatcatccaaatacatatgaaacaatatcca
acaaattgaaagatagcatagttttgaaaagtagctaaaaattttaatag
cttctcatagaaataggttgaagaacctgagagaaaatgtggagacagag
gttataaagagaagagacctggtgcacattaaacagcagcacattaaaaa
acagtaaatatattttttattctttttccatcttttcagatctttactgg
atttcatgaagcccagccatgctgaagatagcaatctgctttactgatat
tttaattcaaaactcaatgttacttgtaaatattcttttttttttagaat
attttattaggtattttcctcatttacatttccaatgctatccaaaagtc
cccaatacactccccccccccactccctacccatccactcccactttttg
tccctggcgttccctgtactgagccatataaaggttgaaagtccaatggg
gcttctctttcagtgatggccactagacatcttttgatactatgcagcta
gagtcaagagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_102805759_102806555
seq2: B6Ng01-073C20.b_45_842

seq1  GAATTCAATAACTGAAAATTATTTAAGAAGTAGGTGATTGTATGGTATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAACTGAAAATTATTTAAGAAGTAGGTGATTGTATGGTATTG  50

seq1  TGACATACACACACAAACACACACACACAGAGGAATAACAAGTAGGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATACACACACAAACACACACACACAGAGGAATAACAAGTAGGTGTG  100

seq1  TAAATTACTCACAGTTGCTAGCTGATAATCTTTTAATGCATCAAGCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTACTCACAGTTGCTAGCTGATAATCTTTTAATGCATCAAGCAAGA  150

seq1  GAAAACTGTTACATTTTATGACTGTACATTATATTTAAGATACCATGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTGTTACATTTTATGACTGTACATTATATTTAAGATACCATGATG  200

seq1  GTATGTATCATTGTGGATTTATGCACTATTTCACTTATTTTCAGCAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATCATTGTGGATTTATGCACTATTTCACTTATTTTCAGCAGAAT  250

seq1  TCACACTTACATACTAATCATGCAAAAAAGATGGGGTAAGTGGGTAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTTACATACTAATCATGCAAAAAAGATGGGGTAAGTGGGTAAAAC  300

seq1  CTAGTTTCATTATTTAAATGTCTTAATCCCAAGCCTTGAGTATTTCCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTCATTATTTAAATGTCTTAATCCCAAGCCTTGAGTATTTCCATA  350

seq1  TTAGATTCCACCCCTTTATCTTCTGAAAACAAAGGAAACTGCTCTGATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTCCACCCCTTTATCTTCTGAAAACAAAGGAAACTGCTCTGATGG  400

seq1  CTTTACACCATCTCCATGATGGAACATCTGAGAGTCCATTACACCAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACACCATCTCCATGATGGAACATCTGAGAGTCCATTACACCAGATT  450

seq1  CTGTTACAGGAGGCTCTGTGATCCACGGAACATTTATTTCAGCTTCCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTACAGGAGGCTCTGTGATCCACGGAACATTTATTTCAGCTTCCCAG  500

seq1  AGATTCCAGTAAGCTGCTTATATTTCTGTTTGGGTAGAAGATTTTGTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCAGTAAGCTGCTTATATTTCTGTTTGGGTAGAAGATTTTGTTGG  550

seq1  GAGGGCAACTGATAGATTATCTTACCTGGTTCTACTAGCAGTTGGTAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCAACTGATAGATTATCTTACCTGGTTCTACTAGCAGTTGGTAGTA  600

seq1  GAAATGATAGACAATTATTTCCAAATTCATCACATAAAGGAAAATTACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGATAGACAATTATTTCCAAATTCATCACATAAAGGAAAATTACAA  650

seq1  AACAAATGTTAAGATTCTCCTG-TTTCATTAATGGCACACTGTTTGTTGC  699
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AACAAATGTTAAGATTCTCCTGTTTTCATTAATGGCACACTGTTTGTTGC  700

seq1  ATTTACTGGTATTTTCCAAATCTCTAACCCTGATTTCTTATTTACCAAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTGGTATTTTCCAAATCTCTAACCCTGATTTCTTATTTACCAAGA  750

seq1  AAAAATAATCATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATCATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  798

seq1: chr8_102876770_102877888
seq2: B6Ng01-073C20.g_68_1178 (reverse)

seq1  GCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGTCTAGTTGGCCATC  50
      ||||||||||||||||||||| |||||||||||| |||||| ||||||||
seq2  GCTCTTGACTCTAGCTGCATA-GTATCAAAAGAT-GTCTAG-TGGCCATC  47

seq1  ACTGGAAAGAG-AGGCCCATTGGACTTTCAAACTTTATATGCCCCAGTAC  99
      ||| ||||||| || |||||||||||||||| ||||||||| | ||||||
seq2  ACT-GAAAGAGAAGCCCCATTGGACTTTCAACCTTTATATGGCTCAGTAC  96

seq1  AGGGGAACGCCAGGGACAAAAAGTGGGAGTGGATGGGTAGGGGAGTGGGG  149
      | ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  A-GGGAACGCCAGGGACAAAAAGTGGGAGTGGATGGGTA-GGGAGTGGGG  144

seq1  GGGGGGAGTGTATTGGGGACTTTTTGGATAGCATTGGAAATGTAAATGAG  199
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGGGGGAGTGTATTGGGGAC-TTTTGGATAGCATTGGAAATGTAAATGAG  193

seq1  GAAAATACCTAATAAAATTATTTCTAAAAAAAAAAGAATATTTACAAGTA  249
      ||||||||||||||||||   |||||||||||||||||||||||||||||
seq2  GAAAATACCTAATAAAAT--ATTCTAAAAAAAAAAGAATATTTACAAGTA  241

seq1  ACATTGAGTTTTGAATTAAAATATCAGTAAAGCAGATTGCTATCTTCAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGAGTTTTGAATTAAAATATCAGTAAAGCAGATTGCTATCTTCAGC  291

seq1  ATGGCTGGGCTTCATGAAATCCAGTAAAGATCTGAAAAGATGGAAAAAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGGGCTTCATGAAATCCAGTAAAGATCTGAAAAGATGGAAAAAGA  341

seq1  ATAAAAAATATATTTACTGTTTTTTAATGTGCTGCTGTTTAATGTGCACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAATATATTTACTGTTTTTTAATGTGCTGCTGTTTAATGTGCACC  391

seq1  AGGTCTCTTCTCTTTATAACCTCTGTCTCCACATTTTCTCTCAGGTTCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCTTCTCTTTATAACCTCTGTCTCCACATTTTCTCTCAGGTTCTT  441

seq1  CAACCTATTTCTATGAGAAGCTATTAAAATTTTTAGCTACTTTTCAAAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTATTTCTATGAGAAGCTATTAAAATTTTTAGCTACTTTTCAAAAC  491

seq1  TATGCTATCTTTCAATTTGTTGGATATTGTTTCATATGTATTTGGATGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTATCTTTCAATTTGTTGGATATTGTTTCATATGTATTTGGATGAT  541

seq1  CTACAACTACATGTTTCCATATTTGTAAGTGTGTTTTCTATATCATAAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAACTACATGTTTCCATATTTGTAAGTGTGTTTTCTATATCATAAGC  591

seq1  TTTTGTTAATTAAAACTGACCTCTATTGATTTTAAAGTTTTTTATTCAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTAATTAAAACTGACCTCTATTGATTTTAAAGTTTTTTATTCAAA  641

seq1  TATAGATTATAATAAACTATTTTTAATAAAATATAATAGTGTAAATGTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATTATAATAAACTATTTTTAATAAAATATAATAGTGTAAATGTTT  691

seq1  TCCTGTGATTATTATTAGGATGCTAATATCATTTTATGATATTTTTATCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGATTATTATTAGGATGCTAATATCATTTTATGATATTTTTATCT  741

seq1  CAATGCTTGTGTTACCTAGTCTAACTTATTTTCTTCTACACAGCACTTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTTGTGTTACCTAGTCTAACTTATTTTCTTCTACACAGCACTTGG  791

seq1  TTCTATCACTTTTTTATTAAATGAATTCTGCCAGTATCTAACTTTTGGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCACTTTTTTATTAAATGAATTCTGCCAGTATCTAACTTTTGGTT  841

seq1  GAAAAGTTCATTGCATTTATATTTCAAATAAAGATAGGTTGATAAGTAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTTCATTGCATTTATATTTCAAATAAAGATAGGTTGATAAGTAAC  891

seq1  TACTCCTGCCACTTGCTAATTATTTCCATATTTTTCCAGTTTTGAGTGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTGCCACTTGCTAATTATTTCCATATTTTTCCAGTTTTGAGTGAG  941

seq1  AGATGCTCTTGTGTCATTTGTTGAATTTTGTAGCAAAACATTTAAATTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTCTTGTGTCATTTGTTGAATTTTGTAGCAAAACATTTAAATTAT  991

seq1  TTTCTCACATGATTTTGCATATCCACATCATTTGTACCAAATAAAAAACC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCACATGATTTTGCATATCCACATCATTTGTACCAAATAAAAAACC  1041

seq1  TATTTTCCTTGCAGCTACCAAGGGAAACACATTTTATATTCCAATGTTTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCTTGCAGCTACCAAGGGAAACACATTTTATATTCCAATGTTTG  1091

seq1  CAATACTATAATTTGAATTC  1119
      ||||||||||||||||||||
seq2  CAATACTATAATTTGAATTC  1111