BAC Information

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BAC

Clone NameB6Ng01-073I19
Chromosome8 (Build37)
Map Location 13,200,140 - 13,349,840
singlet/doubletdoublet
Overlap geneGrtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1
Upstream geneLOC100040175, EG434280, EG434279, Sox1, 1700094C09Rik, Tubgcp3, Atp11a, LOC100040229, Mcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1
Downstream geneAtp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25, LOC100041103, 2610019F03Rik, EG546036, Erich1, Dlgap2, LOC100041140
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073I19.bB6Ng01-073I19.g
ACCDH890644DH890645
length5591,080
definitionDH890644|Mus musculus domesticus DNA, BAC clone: B6Ng01-073I19, 5' end.DH890645|Mus musculus domesticus DNA, BAC clone: B6Ng01-073I19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,200,140 - 13,200,704)(13,348,757 - 13,349,840)
sequence
ttcataagccgcatagtcaaagtcttcgggcctttcaaacccatacggat
cgatcctacaaacaaaaagaacctgtttccccgaaccaagtttccgcgcc
tgcggggatgcggctggggtccaagagctccgacacccgacacccctcgg
tccgcccctccgtccatcctcagttcaccttcccttcctctcttcctccc
ctcctccatcccctccaccccctcatgcccctcgctctccgtggaccaga
gcgcgtcccccgcgcagcatcgactggctcagacccagtccggagagggc
gcccagcaccccgcgcgcgcggcctccgcacccacctgggcacccgagct
cgcgccgcctgcgcgcgctctgcgggatccatgcggagaagggccaggga
ccgcgggactcacaacctctgcagccccgagcgctggaccccggtgcgcc
gctggccccggggcgcgcgagtgcttccggcgggggcgtggccgagacgg
gggcggggtggggacgaggggcggagtcagtgggggcggggcggggtaga
gtggacgga
gaattccaagttcatctaacaaacatcacccaggctcccagggggaaaca
gcaagtgaggccaacctgcaagagcagaacaaggacaaggaggatgagga
ggaacatcaagtccaaatgctgacatcaacagggagggagcggaggggat
ccccaactcaaacattcaaatgaagctgaagccccaaggccttacagacg
ctgttttgagttgggaatccccagactagaccttgtaaacacctgaaaag
tatatgaaaaagccaagacccagggacaaaaggctctgctatcaggaccc
tgacagcggctgggaagtgtgaagctgtgccttccacaagagcccaacaa
atagacaatgtgacttaaggggtgaaggcagaagcagtatttgaaaatgg
cagaaaattggtcaaagaaacattttttttcactaaaggaggtatgtaaa
tgcttgcccaccttgtgcagagccctgagctcaatccctagaaccacaga
aagaaccactaagaaaacacagaagccaggtacagtggatagcacacacc
tcaagtcctagctatgccagaagtgacaggatgatttgaggccaagagtt
caaggccagcctgggcaacctgaaagatctcataacatgatgtcaaaaaa
gaaatggagaaagaaagagggctctgatccacttcagatactaaccactc
cagctcctttcatcggaaaggacagtgacaaggcacctgacagaggccaa
cctgaagacctccagcaaaagatgggtgctcgcctgcagtcaccaggaaa
cataaaatgaaaccagtgttaaaccgacatctatcccaaccatgtggata
accttgccaagaagctagatgatacggcaggaggagcctgagaaggcttc
acgagtggtcaccttgtgtcatgacccacccaaagtaaatatccaaaagg
cagactccgttgtgagacattgggaaaaactcattatattcatcccccgt
aaaaggaagacagcatggacacttaactggcctaatagttcacaatttca
caatgtttgccatggcagcctgatgacttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_13200140_13200704
seq2: B6Ng01-073I19.b_42_606

seq1  GAATTCTTCATAAGCCGCATAGTCAAAGTCTTCGGGCCTTTCAAACCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATAAGCCGCATAGTCAAAGTCTTCGGGCCTTTCAAACCCAT  50

seq1  ACGGATCGATCCTACAAACAAAAAGAACCTGTTTCCCCGAACCAAGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGATCGATCCTACAAACAAAAAGAACCTGTTTCCCCGAACCAAGTTTC  100

seq1  CGCGCCTGCGGGGATGCGGCTGGGGTCCAAGAGCTCCGACACCCGACACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCCTGCGGGGATGCGGCTGGGGTCCAAGAGCTCCGACACCCGACACC  150

seq1  CCTCGGTCCGCCCCTCCGTCCATCCTCAGTTCACCTTCCCTTCCTCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGTCCGCCCCTCCGTCCATCCTCAGTTCACCTTCCCTTCCTCTCTT  200

seq1  CCTCCCCTCCTCCATCCCCTCCACCCCCTCATGCCCCTCGCTCTCCGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTCCTCCATCCCCTCCACCCCCTCATGCCCCTCGCTCTCCGTGG  250

seq1  ACCAGAGCGCGTCCCCCGCGCAGCATCGACTGGCTCAGACCCAGTCCGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGCGCGTCCCCCGCGCAGCATCGACTGGCTCAGACCCAGTCCGGA  300

seq1  GAGGGCGCCCAGCACCCCGCGCGCGCGGCCTCCGCACCCACCTGGGCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCGCCCAGCACCCCGCGCGCGCGGCCTCCGCACCCACCTGGGCACC  350

seq1  CGAGCTCGCGCCGCCTGCGCGCGCTCTGCGGGATCCATGCGGAGAAGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCTCGCGCCGCCTGCGCGCGCTCTGCGGGATCCATGCGGAGAAGGGC  400

seq1  CAGGGACCGCGGGACTCACAACCTCTGCAGCCCCGAGCGCTGGACCCCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACCGCGGGACTCACAACCTCTGCAGCCCCGAGCGCTGGACCCCGG  450

seq1  TGCGCCGCTGGCCCCGGGGCGCGCGAGTGCTTCCGGCGGGGGCGTGGCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCCGCTGGCCCCGGGGCGCGCGAGTGCTTCCGGCGGGGGCGTGGCCG  500

seq1  AGACGGGGGCGGGGTGGGGACGAGGGGCGGAGTCAGTGGGGGCGGGGCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGGGGGCGGGGTGGGGACGAGGGGCGGAGTCAGTGGGGGCGGGGCGG  550

seq1  GGTAGAGTGGACGGA  565
      |||||||||||||||
seq2  GGTAGAGTGGACGGA  565

seq1: chr8_13348757_13349840
seq2: B6Ng01-073I19.g_70_1149 (reverse)

seq1  CAAGTCATCAGGCTTGCATGGCAAACATTGTGGAAACTTGTGGAAGCTAT  50
      ||||||||||||||  ||||||||||||||||  || |||||  | ||| 
seq2  CAAGTCATCAGGCTGCCATGGCAAACATTGTG--AAATTGTG--AACTA-  45

seq1  TTAGTCACGTTAATGTGTCATTGCTGTTTTCTCTTTTACTGTGGGTGTAA  100
      |||| |  ||||| |||||  |||||| ||| ||||||| | || || ||
seq2  TTAGGCCAGTTAA-GTGTCCATGCTGTCTTC-CTTTTACGGGGGATG-AA  92

seq1  TATAATGACGTTTTTCCCAGTGTCTCACACGGGTGTCTGCTTTTTGGATA  150
      |||||||| |||||||||| |||||||||  || |||||| |||||||||
seq2  TATAATGA-GTTTTTCCCAATGTCTCACAACGGAGTCTGCCTTTTGGATA  141

seq1  TTTACTTTGGGTGGGTCATGACAC-AGGTGACCACTCGTG-AGCCTTCTC  198
      |||||||||||||||||||||||| ||||||||||||||| |||||||||
seq2  TTTACTTTGGGTGGGTCATGACACAAGGTGACCACTCGTGAAGCCTTCTC  191

seq1  TGGCTCCTCCTGCCGTATCATCTAGCTTCTTGGC-AGGTTATCCACATGG  247
       ||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGGCTCCTCCTGCCGTATCATCTAGCTTCTTGGCAAGGTTATCCACATGG  241

seq1  TT-GGATAGATGTCGGTTTAACACTGGTTTCATTTTATGTTTCCTGGTGA  296
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATAGATGTCGGTTTAACACTGGTTTCATTTTATGTTTCCTGGTGA  291

seq1  CTGCAGGCGAGCACCCATCTTTTGCTGGAGGTCTTCAGGTTGGCCTCTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGCGAGCACCCATCTTTTGCTGGAGGTCTTCAGGTTGGCCTCTGT  341

seq1  CAGGTGCCTTGTCACTGTCCTTTCCGATG-AAGGAGCTGGAGTGGTTAGT  395
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAGGTGCCTTGTCACTGTCCTTTCCGATGAAAGGAGCTGGAGTGGTTAGT  391

seq1  ATCTGAAGTGGATCAGAGCCCTCTTTCTTTCTCCATTTCTTTTTTGACAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAGTGGATCAGAGCCCTCTTTCTTTCTCCATTTCTTTTTTGACAT  441

seq1  CATGTTATGAGATCTTTCAGGTTGCCCAGGCTGGCCTTGAACTCTTGGCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTATGAGATCTTTCAGGTTGCCCAGGCTGGCCTTGAACTCTTGGCC  491

seq1  TCAAATCATCCTGTCACTTCTGGCATAGCTAGGACTTGAGGTGTGTGCTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCATCCTGTCACTTCTGGCATAGCTAGGACTTGAGGTGTGTGCTA  541

seq1  TCCACTGTACCTGGCTTCTGTGTTTTCTTAGTGGTTCTTTCTGTGGTTCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGTACCTGGCTTCTGTGTTTTCTTAGTGGTTCTTTCTGTGGTTCT  591

seq1  AGGGATTGAGCTCAGGGCTCTGCACAAGGTGGGCAAGCATTTACATACCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTGAGCTCAGGGCTCTGCACAAGGTGGGCAAGCATTTACATACCT  641

seq1  CCTTTAGTGAAAAAAAATGTTTCTTTGACCAATTTTCTGCCATTTTCAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGTGAAAAAAAATGTTTCTTTGACCAATTTTCTGCCATTTTCAAA  691

seq1  TACTGCTTCTGCCTTCACCCCTTAAGTCACATTGTCTATTTGTTGGGCTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTTCTGCCTTCACCCCTTAAGTCACATTGTCTATTTGTTGGGCTC  741

seq1  TTGTGGAAGGCACAGCTTCACACTTCCCAGCCGCTGTCAGGGTCCTGATA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGAAGGCACAGCTTCACACTTCCCAGCCGCTGTCAGGGTCCTGATA  791

seq1  GCAGAGCCTTTTGTCCCTGGGTCTTGGCTTTTTCATATACTTTTCAGGTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCCTTTTGTCCCTGGGTCTTGGCTTTTTCATATACTTTTCAGGTG  841

seq1  TTTACAAGGTCTAGTCTGGGGATTCCCAACTCAAAACAGCGTCTGTAAGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAGGTCTAGTCTGGGGATTCCCAACTCAAAACAGCGTCTGTAAGG  891

seq1  CCTTGGGGCTTCAGCTTCATTTGAATGTTTGAGTTGGGGATCCCCTCCGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGGCTTCAGCTTCATTTGAATGTTTGAGTTGGGGATCCCCTCCGC  941

seq1  TCCCTCCCTGTTGATGTCAGCATTTGGACTTGATGTTCCTCCTCATCCTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTGTTGATGTCAGCATTTGGACTTGATGTTCCTCCTCATCCTC  991

seq1  CTTGTCCTTGTTCTGCTCTTGCAGGTTGGCCTCACTTGCTGTTTCCCCCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCTTGTTCTGCTCTTGCAGGTTGGCCTCACTTGCTGTTTCCCCCT  1041

seq1  GGGAGCCTGGGTGATGTTTGTTAGATGAGCTTGGAATTC  1084
      |||||||||||||||||||||||||||| ||||||||||
seq2  GGGAGCCTGGGTGATGTTTGTTAGATGAACTTGGAATTC  1080