BAC Information

Click to search

BAC

Clone NameB6Ng01-073P01
Chromosome8 (Build37)
Map Location 104,913,849 - 105,039,880
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneCdh11, EG667618, LOC100041368, 1600027J07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073P01.bB6Ng01-073P01.g
ACCDH890924DH890925
length8021,023
definitionDH890924|Mus musculus domesticus DNA, BAC clone: B6Ng01-073P01, 5' end.DH890925|Mus musculus domesticus DNA, BAC clone: B6Ng01-073P01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,039,081 - 105,039,880)(104,913,849 - 104,914,861)
sequence
gaattcctgatatttggccccacccagtggccattttcactgtcctctgg
tgtataacaagattcactctcagaagatccagtatgacatgctatggttt
tggagtgtgaaataagagatttttagtagtgatgaatgccaagtgtaaga
ttcaataatttcaaatctaaacacttttctttttgtcctaaagataaata
tctccactgttgtagggttattgtttgatggtgtatgtaaaactgaatgt
ccaagaaaatgttactttgatatattccattgatcacttggtaattgtac
aacataatcatcaagtgactaaatgatagaaataaaccctggtaaaatta
cggggaaagctaatatgtgacccagactatgtaagtcattagagtgcttc
tgaccccaacctgcaagggagctgagtttgctcttcccctgtttgcccaa
tctatgtttaggaactagtggcttgaagtctttggttctttaacaagtag
tagtaagtctgtttattaccattcccaatgagcaccccctcccccataag
attatgtttgcctcacctttggaaagtagaacacttaaatgtgtagaggt
atcaatctccaaatgaagtcatcatcaaatgttaaattagcagtcaaaac
tgtgactatctcatacattactaattgttgctaggctctgtcaggaaagc
agcatatatttctaaagagagtggatccttgtatcctggcagtaaagcta
tgttgtttttcttcctcataaaaagaaatttattcttgtactgaggatac
tt
gaattcaaggagtggaaacactaagattgatacacttctacactacttcc
ttcaatgtgaggataaaaaaacaaaacatatctttgaatttggggaaatc
aaagtcttactcaaagagtacatcaaaactttaaccaaatgagaaaataa
gagcagtgttaaatgaaaatattttcactggtacagaattctctgtgcat
gtatttacaaagtgaacagtagtgattaatatttctactattctattaat
gtttatgaaagcagagtaaaggtaacctgtataatatttttctttgtata
gataattagagatacatgtgtatgaatacatataaattatatatgtataa
aactagggaatcttactgacaagacagcatataatcatttctttcacatt
aataagaatgtaaagactatgtttaaatgagacattgatatgatttccta
aatttattacttgtcagataaacagaaataattaaagatagtgtagaaac
cctaaaacaataggaaaaaaagagaagatggataggaaaaaaagagacag
atgaaacaaaaaaatgagagaagggcagtgcagactgataaaggaagagt
aaggaacagtgctagttgcttttctattgctattcttgaacaccatgaca
agccagtgtatttatccttatgggtccagagagataagagttcacaatgg
agaaatgaaggcatagtgtcaggaatagaaagctcagagatcacatattg
aaccacttgcagggagcagagagtgaacttggaattgcatgagtctttta
aacttcaaagcccaccctagttacatacttcctccaatgagaaaatacct
cttaatgcaaaaacagcactaccaatcactcaaatacaggagaccatagg
agacatctcattcagatcacacatgaagggagggcaggagaaaagaaaga
aagagtgtttataataaatgtacagtaactaaaatcttatgtaggatgaa
tagggacatcatttttaaactgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_105039081_105039880
seq2: B6Ng01-073P01.b_46_847 (reverse)

seq1  AAGTATCCTCAGTACAGTAATAAATTTCTTTTTATGAGG-AGAGAAACAA  49
      ||||||||||||||||  ||||||||||||||||||||| ||| ||||||
seq2  AAGTATCCTCAGTACAAGAATAAATTTCTTTTTATGAGGAAGAAAAACAA  50

seq1  CATAGCTTTGACTGCCAGGATACAAGGATCCACTCTC-TTAG-AATATAT  97
      ||||||||| ||||||||||||||||||||||||||| |||| |||||||
seq2  CATAGCTTT-ACTGCCAGGATACAAGGATCCACTCTCTTTAGAAATATAT  99

seq1  GCTGCTTTCCTGACAGAGCCTAGCAACAATTAGTAATGTATGAGATAGTC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTTCCTGACAGAGCCTAGCAACAATTAGTAATGTATGAGATAGTC  149

seq1  ACAGTTTTGACTGCTAATTTAACATTTGATGATGACTTCATTTGGAGATT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTGACTGCTAATTTAACATTTGATGATGACTTCATTTGGAGATT  199

seq1  GATACCTCTACACATTTAAGTGTTCTACTTTCCAAAGGTGAGGCAAACAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCTCTACACATTTAAGTGTTCTACTTTCCAAAGGTGAGGCAAACAT  249

seq1  AATCTTATGGGGGAGGGGGTGCTCATTGGGAATGGTAATAAACAGACTTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTATGGGGGAGGGGGTGCTCATTGGGAATGGTAATAAACAGACTTA  299

seq1  CTACTACTTGTTAAAGAACCAAAGACTTCAAGCCACTAGTTCCTAAACAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACTTGTTAAAGAACCAAAGACTTCAAGCCACTAGTTCCTAAACAT  349

seq1  AGATTGGGCAAACAGGGGAAGAGCAAACTCAGCTCCCTTGCAGGTTGGGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGGGCAAACAGGGGAAGAGCAAACTCAGCTCCCTTGCAGGTTGGGG  399

seq1  TCAGAAGCACTCTAATGACTTACATAGTCTGGGTCACATATTAGCTTTCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGCACTCTAATGACTTACATAGTCTGGGTCACATATTAGCTTTCC  449

seq1  CCGTAATTTTACCAGGGTTTATTTCTATCATTTAGTCACTTGATGATTAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTAATTTTACCAGGGTTTATTTCTATCATTTAGTCACTTGATGATTAT  499

seq1  GTTGTACAATTACCAAGTGATCAATGGAATATATCAAAGTAACATTTTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTACAATTACCAAGTGATCAATGGAATATATCAAAGTAACATTTTCT  549

seq1  TGGACATTCAGTTTTACATACACCATCAAACAATAACCCTACAACAGTGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATTCAGTTTTACATACACCATCAAACAATAACCCTACAACAGTGG  599

seq1  AGATATTTATCTTTAGGACAAAAAGAAAAGTGTTTAGATTTGAAATTATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTATCTTTAGGACAAAAAGAAAAGTGTTTAGATTTGAAATTATT  649

seq1  GAATCTTACACTTGGCATTCATCACTACTAAAAATCTCTTATTTCACACT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTACACTTGGCATTCATCACTACTAAAAATCTCTTATTTCACACT  699

seq1  CCAAAACCATAGCATGTCATACTGGATCTTCTGAGAGTGAATCTTGTTAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACCATAGCATGTCATACTGGATCTTCTGAGAGTGAATCTTGTTAT  749

seq1  ACACCAGAGGACAGTGAAAATGGCCACTGGGTGGGGCCAAATATCAGGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGAGGACAGTGAAAATGGCCACTGGGTGGGGCCAAATATCAGGAA  799

seq1  TTC  800
      |||
seq2  TTC  802

seq1: chr8_104913849_104914861
seq2: B6Ng01-073P01.g_68_1073

seq1  GAATTCAAGGAGTGGAAACACTAAGATTGATACACTTCTACACTACTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGAGTGGAAACACTAAGATTGATACACTTCTACACTACTTCC  50

seq1  TTCAATGTGAGGATAAAAAAACAAAACATATCTTTGAATTTGGGGAAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGTGAGGATAAAAAAACAAAACATATCTTTGAATTTGGGGAAATC  100

seq1  AAAGTCTTACTCAAAGAGTACATCAAAACTTTAACCAAATGAGAAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTTACTCAAAGAGTACATCAAAACTTTAACCAAATGAGAAAATAA  150

seq1  GAGCAGTGTTAAATGAAAATATTTTCACTGGTACAGAATTCTCTGTGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTGTTAAATGAAAATATTTTCACTGGTACAGAATTCTCTGTGCAT  200

seq1  GTATTTACAAAGTGAACAGTAGTGATTAATATTTCTACTATTCTATTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTACAAAGTGAACAGTAGTGATTAATATTTCTACTATTCTATTAAT  250

seq1  GTTTATGAAAGCAGAGTAAAGGTAACCTGTATAATATTTTTCTTTGTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGAAAGCAGAGTAAAGGTAACCTGTATAATATTTTTCTTTGTATA  300

seq1  GATAATTAGAGATACATGTGTATGAATACATATAAATTATATATGTATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTAGAGATACATGTGTATGAATACATATAAATTATATATGTATAA  350

seq1  AACTAGGGAATCTTACTGACAAGACAGCATATAATCATTTCTTTCACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGGAATCTTACTGACAAGACAGCATATAATCATTTCTTTCACATT  400

seq1  AATAAGAATGTAAAGACTATGTTTAAATGAGACATTGATATGATTTCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAATGTAAAGACTATGTTTAAATGAGACATTGATATGATTTCCTA  450

seq1  AATTTATTACTTGTCAGATAAACAGAAATAATTAAAGATAGTGTAGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTACTTGTCAGATAAACAGAAATAATTAAAGATAGTGTAGAAAC  500

seq1  CCTAAAACAATAGGAAAAAAAGAGAAGATGGATAGGAAAAAAAGAGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAACAATAGGAAAAAAAGAGAAGATGGATAGGAAAAAAAGAGACAG  550

seq1  ATGAAACAAAAAAATGAGAGAAGGGCAGTGCAGACTGATAAAGGAAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACAAAAAAATGAGAGAAGGGCAGTGCAGACTGATAAAGGAAGAGT  600

seq1  AAGGAACAGTGCTAGTTGCTTTTCTATTGCTATTCTTGAACACCATGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACAGTGCTAGTTGCTTTTCTATTGCTATTCTTGAACACCATGACA  650

seq1  AGCCAGTGTATTTATCCTTATGGGTCCAGAGAGATAAGAGTTCACAATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTGTATTTATCCTTATGGGTCCAGAGAGATAAGAGTTCACAATGG  700

seq1  AGAAATGAAGGCATAGTGTCAGGAATAGAAAGCTCAGAGATCACATATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGAAGGCATAGTGTCAGGAATAGAAAGCTCAGAGATCACATATTG  750

seq1  AACCACTTGCAGGGAGCAGAGAGTGAACTTGGAATTGCATGAGTCTTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTTGCAGGGAGCAGAGAGTGAACTTGGAATTGCATGAGTCTTTTA  800

seq1  AACTTCAAAGCCCACCCTAGTTACATACTTCCTCCAATGAGAAAATACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAAAGCCCACCCTAGTTACATACTTCCTCCAATGAGAAAATACCT  850

seq1  CTTAATGCAAAAAACAGCACTACCAATCACTCAAATACAGGAGACCATAG  900
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGC-AAAAACAGCACTACCAATCACTCAAATACAGGAGACCATAG  899

seq1  GAGACATCTCATTCAGATCACCACATGAAGGGAGGGCAGGAGAAAAGATA  950
      |||||||||||||||||||| ||||||||||||||||||||||||||| |
seq2  GAGACATCTCATTCAGATCA-CACATGAAGGGAGGGCAGGAGAAAAGAAA  948

seq1  GAAAGAGTTGTTTATAATAAAATGTACAGTAACTAAAAATCTTATGTAGG  1000
      ||||||| |||||||||| ||||||||||||||| |||||||||||||||
seq2  GAAAGAG-TGTTTATAAT-AAATGTACAGTAACT-AAAATCTTATGTAGG  995

seq1  AATGGAATAGGGA  1013
      |   |||||||||
seq2  A--TGAATAGGGA  1006