BAC Information

Click to search

BAC

Clone NameB6Ng01-074C13
Chromosome8 (Build37)
Map Location 19,687,807 - 19,712,182
singlet/doubletdoublet
Overlap geneLOC624198, EG665730
Upstream geneMcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561
Downstream gene4930467E23Rik, LOC100041567, LOC547150, LOC100040599, EG665822, 6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074C13.bB6Ng01-074C13.g
ACCDH891086DH891087
length1,150932
definitionDH891086|Mus musculus domesticus DNA, BAC clone: B6Ng01-074C13, 5' end.DH891087|Mus musculus domesticus DNA, BAC clone: B6Ng01-074C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,687,807 - 19,688,967)(19,711,248 - 19,712,182)
sequence
gaattcattgataaggtccaggacattaatgacaaccctccagagtttct
gcatgaaatctatcataccaatgtgcctgagaggtccgatgtgggtaggt
aagtaatggtcacctattctctttctatctggtatgtctgcaggttgaca
ggctggtgcctgcccttcaacccaggaagcagagcttgtgttcaatcatt
attgcacattaacaaggaaaaaaatgccttgttggattcttaaaaattaa
aatcgttttttttcctcgcacaaaatatcatgattatggcttctgctctt
tccacccctcccagttactccacacatcccctgccatccagatgcaccct
ttcttttcagtctccatagtaaacaatcagactcctaaaagatagtgaga
aaagaatatataagattaaaaaaaagaaaaccctaacacattgaacaaaa
gaaacaaacagaaaggaagggactccaaggaaaagtgcataacagatata
gagactcgggttttcaaatgtttatattagacttgaggctctaaagtcga
ctattaacttcctattaactaggaagtctggaagggggaagaatgagatt
cagtttagcaaatcctgacttatgttcagctgtgtgaagtgacaccattt
aatatttgctcttcctctgtagaagagcaataacaatttccagtcttcaa
agagtaatgattatattcatccaatcactagggcattgatgttgaataag
taacagcaatgataatgtttgctgctttggacttcacattaattgatggc
gaacacaccccagtgtgtttaacctccccatgattaaactttgcaagcag
tcattccagttggtcttggataaatgagaaaccgaagcagaaacagatga
acgaatttgtgttactaaattcacccacaatacatataaagctgccatca
gctgatttcaaatatgcttaaagacatgctgctttgcttgaagatggaac
tctaaacatggctctgggtatcatttctgcttgaatttctaagatgtggt
cttttgagtaaatctgatcattggccagtgaagccatcagggatggattg
tcatttaccgttagagaaaaaccagcaccgattataagaatagcttactc

gaattctcagctgtaaaagaatccagatgttctaagatgatttggggggg
atgccaaaaggatgccagatttttacaaagacctgccaagtcttgatgtg
tgctccttaggaaccattctggaagagatgctgggaagtgcacccccccg
ccactcccactctacccccccaagcaagatattcgtgagaaagggaggaa
gacagagttgggtggacagaggagctgagcctcaatgttgtagccactga
ggtctaagccagttctacaggagctggggaggctccaaactgtgaggagg
gggtccttagtaccacctgtgtcagctttactcactacaggctctcatct
aagacagtggttggagttttaacacagctcctcctgttgtgaggactctc
aaccataaaattatcttgttgcggttctctcgacagctgtccctctttat
aagttggcactccgtaaggatgaagccatgttcagctccagtgccaagac
tgtgaagccaaatggggagaagccggatgagttccaagtctggcatctct
caggtgctgctcgagctggagatgaacgcagatgtcaaggctctgctgca
ggaagtcaacatcaccacaaccaaggaaattgaagttggtggtggtcgga
aagctaccataatttttgtaccagttcctcagctttaagtctttccagaa
aattcatgtcaggctagttcgtgaattggagaaaaaattcagtgggaagc
aagtagtgttcattgctcagaggaggattctgcccaagccaacctggaaa
atctgtatgaaaaataagcagaagcgccccagaaaaccacaccctgacag
tagtgcatgacagccgactgggtctcccagtgaaattgtgggtgaggatc
tgtgtgaaactggatggcagccggctctaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_19687807_19688967
seq2: B6Ng01-074C13.b_44_1193

seq1  GAATTCATTGATAAGGTCCAGGACATTAATGACAACCCTCCAGAGTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGATAAGGTCCAGGACATTAATGACAACCCTCCAGAGTTTCT  50

seq1  GCATGAAATCTATCATACCAATGTGCCTGAGAGGTCCGATGTGGGTAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAATCTATCATACCAATGTGCCTGAGAGGTCCGATGTGGGTAGGT  100

seq1  AAGTAATGGTCACCTATTCTCTTTCTATCTGGTATGTCTGCAGGTTGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATGGTCACCTATTCTCTTTCTATCTGGTATGTCTGCAGGTTGACA  150

seq1  GGCTGGTGCCTGCCCTTCAACCCAGGAAGCAGAGCTTGTGTTCAATCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTGCCTGCCCTTCAACCCAGGAAGCAGAGCTTGTGTTCAATCATT  200

seq1  ATTGCACATTAACAAGGAAAAAAATGCCTTGTTGGATTCTTAAAAATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCACATTAACAAGGAAAAAAATGCCTTGTTGGATTCTTAAAAATTAA  250

seq1  AATCGTTTTTTTTCCTCGCACAAAATATCATGATTATGGCTTCTGCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGTTTTTTTTCCTCGCACAAAATATCATGATTATGGCTTCTGCTCTT  300

seq1  TCCACCCCTCCCAGTTACTCCACACATCCCCTGCCATCCAGATGCACCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCCTCCCAGTTACTCCACACATCCCCTGCCATCCAGATGCACCCT  350

seq1  TTCTTTTCAGTCTCCATAGTAAACAATCAGACTCCTAAAAGATAGTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCAGTCTCCATAGTAAACAATCAGACTCCTAAAAGATAGTGAGA  400

seq1  AAAGAATATATAAGATTAAAAAAAAGAAAACCCTAACACATTGAACAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATATATAAGATTAAAAAAAAGAAAACCCTAACACATTGAACAAAA  450

seq1  GAAACAAACAGAAAGGAAGGGACTCCAAGGAAAAGTGCATAACAGATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAACAGAAAGGAAGGGACTCCAAGGAAAAGTGCATAACAGATATA  500

seq1  GAGACTCGGGTTTTCAAATGTTTATATTAGACTTGAGGCTCTAAAGTCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCGGGTTTTCAAATGTTTATATTAGACTTGAGGCTCTAAAGTCGA  550

seq1  CTATTAACTTCCTATTAACTAGGAAGTCTGGAAGGGGGAAGAATGAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAACTTCCTATTAACTAGGAAGTCTGGAAGGGGGAAGAATGAGATT  600

seq1  CAGTTTAGCAAATCCTGACTTATGTTCAGCTGTGTGAAGTGACACCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTAGCAAATCCTGACTTATGTTCAGCTGTGTGAAGTGACACCATTT  650

seq1  AATATTTGCTCTTCCTCTGTAGAAGAGCAATAACAATTTCCAGTCTTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTGCTCTTCCTCTGTAGAAGAGCAATAACAATTTCCAGTCTTCAA  700

seq1  AGAGTAATGATTATATTCATCCAATCACTAGGGCATTGATGTTGAATAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAATGATTATATTCATCCAATCACTAGGGCATTGATGTTGAATAAG  750

seq1  TAACAGCAATGATAATGTTTGCTGCTTTGGACTTCACATTAATTGATGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCAATGATAATGTTTGCTGCTTTGGACTTCACATTAATTGATGGC  800

seq1  GAACACACCCCAGTGTGTTTAACCTCCCCATGATTAAACTTTGCAAAGCA  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAACACACCCCAGTGTGTTTAACCTCCCCATGATTAAACTTTGC-AAGCA  849

seq1  GTCATTCCAGTTGGTCTTGGATAAATGAGAAACCGAAGCAGAAACAGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCCAGTTGGTCTTGGATAAATGAGAAACCGAAGCAGAAACAGATG  899

seq1  AACGAATTTGTGTTACTAAATTCACCCACAATACATATAAGGCTGCCATC  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AACGAATTTGTGTTACTAAATTCACCCACAATACATATAAAGCTGCCATC  949

seq1  AGCTGATTTCAAATATGCTTAAAGACATGCTGCTTTGCTTGAAGATGGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATTTCAAATATGCTTAAAGACATGCTGCTTTGCTTGAAGATGGAA  999

seq1  CTCTAACACATGCCTCTTGGTATCATTTCTGCTTGAATTTCTAGAATGTG  1050
      |||||| ||||| |||| |||||||||||||||||||||||||  |||||
seq2  CTCTAA-ACATGGCTCTGGGTATCATTTCTGCTTGAATTTCTAAGATGTG  1048

seq1  GTCTTTTGAGTAAATCTGATTCATTGGCCCCAAGTGAAGCCATCAGGGAT  1100
      ||||||||||||||||||| |||||||||   ||||||||||||||||||
seq2  GTCTTTTGAGTAAATCTGA-TCATTGGCC---AGTGAAGCCATCAGGGAT  1094

seq1  AGATTGTTCATTTTACCAGTTAGAGAAAAACCAAGCACCGATTATAAAGA  1150
       ||||| ||| |||||| |||||||||||||| |||||||||||| ||||
seq2  GGATTG-TCA-TTTACC-GTTAGAGAAAAACC-AGCACCGATTAT-AAGA  1139

seq1  TTAGCTTACTC  1161
       ||||||||||
seq2  ATAGCTTACTC  1150

seq1: chr8_19711248_19712182
seq2: B6Ng01-074C13.g_72_1003 (reverse)

seq1  TTTTATGAGCTGGCTGCCATCCAGTTTCACACAGATCCTCTACCCACAAT  50
      ||||| |||| ||||||||||||||||||||||||||||| |||||||||
seq2  TTTTA-GAGCCGGCTGCCATCCAGTTTCACACAGATCCTC-ACCCACAAT  48

seq1  TTCACTTGGGAAGACCAAGTCTGCTGTCATGCACTACTGTCAGGGTGTGG  100
      ||||||  || ||||| |||| ||||||||||||||||||||||||||||
seq2  TTCACT--GGGAGACCCAGTCGGCTGTCATGCACTACTGTCAGGGTGTGG  96

seq1  -TTTCTGGGGCGCTTCTGCTTATTTTTCGTACGGATTTTCCAGGTTGGCT  149
       ||||||||||||||||||||||||||| ||| |||||||||||||||||
seq2  TTTTCTGGGGCGCTTCTGCTTATTTTTCATACAGATTTTCCAGGTTGGCT  146

seq1  TGGGCAGAATCCTCCTCTGAGCAATGAACACTACTTGCTTCCCACTGAAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGAATCCTCCTCTGAGCAATGAACACTACTTGCTTCCCACTGAAT  196

seq1  TTTTTCTCCAATTCACGAACTAGCCTGACATGAATTTTCTGGAAAGACTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCCAATTCACGAACTAGCCTGACATGAATTTTCTGGAAAGACTT  246

seq1  AAAGCTGAGGAACTGGTACAAAAATTATGGTAGCTTTCCGACCACCACCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGAGGAACTGGTACAAAAATTATGGTAGCTTTCCGACCACCACCA  296

seq1  ACTTCAATTTCCTTGGTTGTGGTGATGTTGACTTCCTGCAGCAGAGCCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAATTTCCTTGGTTGTGGTGATGTTGACTTCCTGCAGCAGAGCCTT  346

seq1  GACATCTGCGTTCATCTCCAGCTCGAGCAGCACCTGAGAGATGCCAGACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTGCGTTCATCTCCAGCTCGAGCAGCACCTGAGAGATGCCAGACT  396

seq1  TGGAACTCATCCGGCTTCTCCCCATTTGGCTTCACAGTCTTGGCACTGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCATCCGGCTTCTCCCCATTTGGCTTCACAGTCTTGGCACTGGA  446

seq1  GCTGAACATGGCTTCATCCTTACGGAGTGCCAACTTATAAAGAGGGACAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACATGGCTTCATCCTTACGGAGTGCCAACTTATAAAGAGGGACAG  496

seq1  CTGAAGAGAGAACTGCAACAAGATAATTTTATGGTTGAGAGTCCTCACAA  549
      |||  |||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTGTCGAGAGAACCGCAACAAGATAATTTTATGGTTGAGAGTCCTCACAA  546

seq1  CAGGAGGAGCTGTGTTAAAACTCCAACCACTGTCTTAGATGAGAGCCTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGAGCTGTGTTAAAACTCCAACCACTGTCTTAGATGAGAGCCTGT  596

seq1  AGTGAGTAAAGCTGACACAGGTGGTACTAAGGACCCCCTCCTCACAGTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTAAAGCTGACACAGGTGGTACTAAGGACCCCCTCCTCACAGTTT  646

seq1  GGAGCCTCCCCAGCTCCTGTAGAACTGGCTGAGACCTCAGTGGCTACTAC  699
      |||||||||||||||||||||||||||||| |||||||||||||||| ||
seq2  GGAGCCTCCCCAGCTCCTGTAGAACTGGCTTAGACCTCAGTGGCTACAAC  696

seq1  ATTGAGGCTCAGCTCCTCTGTCCACCCAACTCTGTCTTCCTCCCTTTCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGCTCAGCTCCTCTGTCCACCCAACTCTGTCTTCCTCCCTTTCTC  746

seq1  ACGAATATCTTGCTTGGGGGGGTGGAGGGGGAGTGGCGGAGGGGGGCACT  799
      ||||||||||||||||||||||| ||| ||||||||||| |||| |||||
seq2  ACGAATATCTTGCTTGGGGGGGTAGAGTGGGAGTGGCGGGGGGGTGCACT  796

seq1  TCCCAGCATCTCTTCCAGAATGGTTCCTAAGGAGCACACATCAAGACTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCATCTCTTCCAGAATGGTTCCTAAGGAGCACACATCAAGACTTG  846

seq1  GCAGGTCTTTGTAAAAATCTGGCGTCCTTTTGGCATCCCCCCCAAATCAT  899
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCAGGTCTTTGTAAAAATCTGGCATCCTTTTGGCATCCCCCCCAAATCAT  896

seq1  CTTAGAACATCTGGATTCTTTTACAGCTGAGGATTC  935
      ||||||||||||||||||||||||||||||| ||||
seq2  CTTAGAACATCTGGATTCTTTTACAGCTGAGAATTC  932