BAC Information

Click to search

BAC

Clone NameB6Ng01-074C20
Chromosome8 (Build37)
Map Location 85,764,485 - 85,922,395
singlet/doubletdoublet
Overlap geneTbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn
Upstream geneIl15, EG666564, LOC675800, EG666289, Zfp330, Rnf150, LOC100039688
Downstream geneScoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074C20.bB6Ng01-074C20.g
ACCDH891100DH891101
length8651,153
definitionDH891100|Mus musculus domesticus DNA, BAC clone: B6Ng01-074C20, 5' end.DH891101|Mus musculus domesticus DNA, BAC clone: B6Ng01-074C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,764,485 - 85,765,343)(85,921,247 - 85,922,395)
sequence
gaattccaggtttataccaccaggcccagtttcagcctttttaagttgga
gatatcattaagtgacctgttctgattacaggaaaagcgactcctttcta
tttaatgacatcagtaggaagggttccgaaatcagaactgaaatatagca
tcactatggtgattcttctgtgctggaatgcacaggccaccgtccaaaga
acccagacccctgggacgataaacaatcagccggggtggcggaggaagtt
tcagttagctaaagacggcaaggttgcggggaccaaccctgtccctgctg
ccttgtcacatctgtagcatttttgagaggccagaaactagactggaggc
aaaacagttttcaaagcttttgcttctgccgtgtcctgcttcacttggag
gcaaatcagtgaagtggataactgcacacttttataatacaagggaaaat
gttttgtcttaagttaacttggcaatagttctctgatctctccgcagata
atagaaatccttgaacagttttcctatgttctttttctttttctttcctt
ctttcttttccttttttgggggttgggtggggggacagagaaccagcctg
gaacttggctgtgtagctgacaatggctccaccttccgggatgctgggat
tatagactcaggccacctcagcccgttttgtgtgctgctgggggatgaag
cccaggggccgtgtgcactgtaagcaaaccctctaccagctgagctacac
gcctagccccaggactccaaactctggagcaatgaatgctggaaattatg
actttgccccagagtaacttctgaaagggtgtttgacttgctgggattcc
caccttcttcacaca
gaattctctaaatggctttagattggtctgtcaatgggttcatttcaact
gtacacacatgtggaggcatttggagtttgcggggacggagaacaatttg
tacagaggcaggcaggcaggcaggcatgatctttgccttatacaattatg
gaagttatgagaagaaattggccatggtagcctagcacatgctgtgatgt
aacctccttgcagtgtcagagctctcagctatgtgtttcagggtgtgagg
acctcctagacagtgaactcccctcctgctcagctggagcagagggagaa
cttccttttgggcataatggttggggaggctgcttgtggaccagaaggga
gactctcttttgtcattctctgaggtggtccttctagggaaggaaatatg
accctgaaaggcacttctatagcccagtctgaagatggcagcatcaggga
tcctgtggacaatgggcaaggcctgaagctgtaggctgcctggtgaccac
aatcttacattgctcgttattaatacacctctacactcgacctaggagtg
cccaggcttgaggcaaaaggtccagcacagctcagtgcaagtgagcttac
tggggtcaaagtccaaccatggtctaagagtcagacaactggttagagca
ggtcatccctgaagcaccgtagaggggcaagtgaaaggcagagtggaact
tccggtcaacataacataacaaaaatataatctcaaaggctgtaaacatt
ggttgtgctatctaatatctgaataagtaagcattttaccatcatatata
gcaatttctgaatccatatcatccttctttgcttttgataagacccacct
gtaaataaaagtgaacaaagatgtttgccattaaattaagatttgcaatt
tatagataaaatgcatgtaaaaatacaagaggttgttacccaacacaatc
agttttttttttttcattcaaaatgagctagtactaagaagctgatcagt
taatgcagtctttgaagcaatcccatcccagagggcaaggagtgaattca
gtcctgctcggctttgctggtgtctgcgggaagttagtatgcacaccaca
gctgttggtctcagtgtgaactggatggagcaaccatcttgctcccagca
ggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_85764485_85765343
seq2: B6Ng01-074C20.b_42_906

seq1  GAATTCCAGGTTTATACCACCAGGCCCAGTTTCAGCCTTTTTAAGTTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTTTATACCACCAGGCCCAGTTTCAGCCTTTTTAAGTTGGA  50

seq1  GATATCATTAAGTGACCTGTTCTGATTACAGGAAAAGCGACTCCTTTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCATTAAGTGACCTGTTCTGATTACAGGAAAAGCGACTCCTTTCTA  100

seq1  TTTAATGACATCAGTAGGAAGGGTTCCGAAATCAGAACTGAAATATAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGACATCAGTAGGAAGGGTTCCGAAATCAGAACTGAAATATAGCA  150

seq1  TCACTATGGTGATTCTTCTGTGCTGGAATGCACAGGCCACCGTCCAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATGGTGATTCTTCTGTGCTGGAATGCACAGGCCACCGTCCAAAGA  200

seq1  ACCCAGACCCCTGGGACGATAAACAATCAGCCGGGGTGGCGGAGGAAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGACCCCTGGGACGATAAACAATCAGCCGGGGTGGCGGAGGAAGTT  250

seq1  TCAGTTAGCTAAAGACGGCAAGGTTGCGGGGACCAACCCTGTCCCTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAGCTAAAGACGGCAAGGTTGCGGGGACCAACCCTGTCCCTGCTG  300

seq1  CCTTGTCACATCTGTAGCATTTTTGAGAGGCCAGAAACTAGACTGGAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCACATCTGTAGCATTTTTGAGAGGCCAGAAACTAGACTGGAGGC  350

seq1  AAAACAGTTTTCAAAGCTTTTGCTTCTGCCGTGTCCTGCTTCACTTGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGTTTTCAAAGCTTTTGCTTCTGCCGTGTCCTGCTTCACTTGGAG  400

seq1  GCAAATCAGTGAAGTGGATAACTGCACACTTTTATAATACAAGGGAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCAGTGAAGTGGATAACTGCACACTTTTATAATACAAGGGAAAAT  450

seq1  GTTTTGTCTTAAGTTAACTTGGCAATAGTTCTCTGATCTCTCCGCAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTCTTAAGTTAACTTGGCAATAGTTCTCTGATCTCTCCGCAGATA  500

seq1  ATAGAAATCCTTGAACAGTTTTCCTATGTTCTTTTTCTTTTTCTTTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATCCTTGAACAGTTTTCCTATGTTCTTTTTCTTTTTCTTTCCTT  550

seq1  CTTTCTTTTCCTTTTTTGGGGGTTGGGTGGGGGGACAGAGAACCAGCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTCCTTTTTTGGGGGTTGGGTGGGGGGACAGAGAACCAGCCTG  600

seq1  GAACTTGGCTGTGTAGCTGACAATGGCTCCACCTTCCGGGATGCTGGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGGCTGTGTAGCTGACAATGGCTCCACCTTCCGGGATGCTGGGAT  650

seq1  TATAGACTCAGGCCACCTCAGCCCG-TTTGTGTGCTGCT-GGGGATGAAG  698
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  TATAGACTCAGGCCACCTCAGCCCGTTTTGTGTGCTGCTGGGGGATGAAG  700

seq1  CCCA-GGGCCGTGTGCACTGTAAGCAAACCCTCTACCAGCTGAGCTACAC  747
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGGCCGTGTGCACTGTAAGCAAACCCTCTACCAGCTGAGCTACAC  750

seq1  GCCTAGCCCCAGGACTCCAAACTCTGGAGCAATGAATGCTGG-AATTATG  796
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCCTAGCCCCAGGACTCCAAACTCTGGAGCAATGAATGCTGGAAATTATG  800

seq1  ACTTTGCCCCAGAGTAACTTCTGAAA-GGTG-TTGACTTGCTGGTATTTC  844
      |||||||||||||||||||||||||| |||| |||||||||||| ||| |
seq2  ACTTTGCCCCAGAGTAACTTCTGAAAGGGTGTTTGACTTGCTGGGATTCC  850

seq1  CCACTTCTTCACACA  859
      |  ||||||||||||
seq2  CACCTTCTTCACACA  865

seq1: chr8_85921247_85922395
seq2: B6Ng01-074C20.g_67_1219 (reverse)

seq1  CCCTGCTGGGAGCCAGATGTGTGCTCCATCCCAGTTCCCACTGAGACC-A  49
      ||||||||||||| |||||  |||||||| ||||||| |||||||||| |
seq2  CCCTGCTGGGAGCAAGATGGTTGCTCCAT-CCAGTTCACACTGAGACCAA  49

seq1  CAGCTGTGGTGTGCATACTTAC-TCCCGCAGACACCAGCAAAGCCGAGCA  98
      ||||||||||||||||||| || |||||||||||||||||||||||||||
seq2  CAGCTGTGGTGTGCATACTAACTTCCCGCAGACACCAGCAAAGCCGAGCA  99

seq1  -GACTGAATTCACTCC-TGCCCTCTGGGATGGGATTGC-TCAAAGACTGC  145
       ||||||||||||||| ||||||||||||||||||||| |||||||||||
seq2  GGACTGAATTCACTCCTTGCCCTCTGGGATGGGATTGCTTCAAAGACTGC  149

seq1  ATTAACTGATCAGCTTCTTAGTACTAGCTCATTTTGAATG-AAAAAAAAA  194
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATTAACTGATCAGCTTCTTAGTACTAGCTCATTTTGAATGAAAAAAAAAA  199

seq1  AACTGATTGTGTTGGGTAACAACCTCTTGTATTTTTACATGCATTTTTAT  244
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACTGATTGTGTTGGGTAACAACCTCTTGTATTTTTACATGCA-TTTTAT  248

seq1  CTATAAATTGCAAATCTTAATTTAATGGCAAACATCTTTGTTCACTTTTA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAATTGCAAATCTTAATTTAATGGCAAACATCTTTGTTCACTTTTA  298

seq1  TTTACAGGTGGGTCTTATCAAAAGCAAAGAAGGATGATATGGATTCAGAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGGTGGGTCTTATCAAAAGCAAAGAAGGATGATATGGATTCAGAA  348

seq1  ATTGCTATATATGATGGTAAAATGCTTACTTATTCAGATATTAGATAGCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTATATATGATGGTAAAATGCTTACTTATTCAGATATTAGATAGCA  398

seq1  CAACCAATGTTTACAGCCTTTGAGATTATATTTTTGTTATGTTATGTTGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAATGTTTACAGCCTTTGAGATTATATTTTTGTTATGTTATGTTGA  448

seq1  CCGGAAGTTCCACTCTGCCTTTCACTTGCCCCTCTACGGTGCTTCAGGGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAAGTTCCACTCTGCCTTTCACTTGCCCCTCTACGGTGCTTCAGGGA  498

seq1  TGACCTGCTCTAACCAGTTGTCTGACTCTTAGACCATGGTTGGACTTTGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGCTCTAACCAGTTGTCTGACTCTTAGACCATGGTTGGACTTTGA  548

seq1  CCCCAGTAAGCTCACTTGCACTGAGCTGTGCTGGACCTTTTGCCTCAAGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTAAGCTCACTTGCACTGAGCTGTGCTGGACCTTTTGCCTCAAGC  598

seq1  CTGGGCACTCCTAGGTCGAGTGTAGAGGTGTATTAATAACGAGCAATGTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCACTCCTAGGTCGAGTGTAGAGGTGTATTAATAACGAGCAATGTA  648

seq1  AGATTGTGGTCACCAGGCAGCCTACAGCTTCAGGCCTTGCCCATTGTCCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTGGTCACCAGGCAGCCTACAGCTTCAGGCCTTGCCCATTGTCCA  698

seq1  CAGGATCCCTGATGCTGCCATCTTCAGACTGGGCTATAGAAGTGCCTTTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCCCTGATGCTGCCATCTTCAGACTGGGCTATAGAAGTGCCTTTC  748

seq1  AGGGTCATATTTCCTTCCCTAGAAGGACCACCTCAGAGAATGACAAAAGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCATATTTCCTTCCCTAGAAGGACCACCTCAGAGAATGACAAAAGA  798

seq1  GAGTCTCCCTTCTGGTCCACAAGCAGCCTCCCCAACCATTATGCCCAAAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTCCCTTCTGGTCCACAAGCAGCCTCCCCAACCATTATGCCCAAAA  848

seq1  GGAAGTTCTCCCTCTGCTCCAGCTGAGCAGGAGGGGAGTTCACTGTCTAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTCTCCCTCTGCTCCAGCTGAGCAGGAGGGGAGTTCACTGTCTAG  898

seq1  GAGGTCCTCACACCCTGAAACACATAGCTGAGAGCTCTGACACTGCAAGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCTCACACCCTGAAACACATAGCTGAGAGCTCTGACACTGCAAGG  948

seq1  AGGTTACATCACAGCATGTGCTAGGCTACCATGGCCAATTTCTTCTCATA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTACATCACAGCATGTGCTAGGCTACCATGGCCAATTTCTTCTCATA  998

seq1  ACTTCCATAATTGTATAAGGCAAAGATCATGCCTGCCTGCCTGCCTGCCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCATAATTGTATAAGGCAAAGATCATGCCTGCCTGCCTGCCTGCCT  1048

seq1  CTGTACAAATTGTTCTCCGTCCCCGCAAACTCCAAATGCCTCCACATGTG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACAAATTGTTCTCCGTCCCCGCAAACTCCAAATGCCTCCACATGTG  1098

seq1  TGTACAGTTGAAATGAACCCATTGACAGACCAATCTAAAGCCATTTAGAG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGTTGAAATGAACCCATTGACAGACCAATCTAAAGCCATTTAGAG  1148

seq1  AATTC  1149
      |||||
seq2  AATTC  1153