BAC Information

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BAC

Clone NameB6Ng01-075H04
Chromosome8 (Build37)
Map Location 36,208,877 - 36,375,897
singlet/doubletdoublet
Overlap geneLOC666804
Upstream geneLeprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159, LOC666746, Dusp4, LOC675578, Tnks, LOC666792, LOC666797
Downstream genePpp1r3b, Thex1, Mfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075H04.bB6Ng01-075H04.g
ACCDH892005DH892006
length1,1311,124
definitionDH892005|Mus musculus domesticus DNA, BAC clone: B6Ng01-075H04, 5' end.DH892006|Mus musculus domesticus DNA, BAC clone: B6Ng01-075H04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,208,877 - 36,210,018)(36,374,766 - 36,375,897)
sequence
gaattcccattcactcctaggagctagaaccagactctgtggtctacaag
agcagtgcaggctggtgccatcatcctttcttgattttagatcgtagaag
tatagagttggtacttggaatgatgaaaaaatatctagaaatgaacagca
gtgattgttgcccaatattgttgaatatattatatgccatcaaacagtgg
cttaaaatagcttaaaatttctccaaaatttcttaaaaatgaaaaaaaca
actatatttagaggtaaaacttttctattttgtatattttaccacaattt
tcttcaaaagaaagtgagtctacttatccaaatgcttctatcccttctaa
gacctccttaccccaatttatagccccaaacatgcatctaagccttcatc
tctggggtgtctctggagtgacccatcttgcttttttatgaagatgagaa
gcaatgtgtcccacttcctgtagctaccccaacagtttttgattagccta
aggtcctttgttacttctagaagtggatccctcagggcagagccgggctg
gagaaagccttttatatttctgggtcagacttaatgcactattgccacat
ttgggtcattaagtcttcaggtatcaacaaactagatcctcaaggtggca
agacatcagaaatatccattatcattcaagcattgcctcaattatcactg
tctgtcttggttaggattttactgctgtaaacagacaccatgaccaaggc
aactcttacaaggacatttaattggggctggcttacaggttcagaggttc
agtccattattatcaaggcaggaacatggcagcatccaggcaggcatggt
gcaggaggagctgagagttctacatcttcatctgaaggctgctagcagaa
tactggcttccaggcagctaggatgaaggtctaaagctcacacccacagt
gacacacctactccaacaagccaccccactccacaagggccacactccta
aagtcactccctaggtcagaaaatacaaaccatcacacacttgtccttgt
gacttcttgctgccatgaattcccacaactcacatggtctgtctctgaaa
aaggtcagatctttggatcacctcttcagac
gaattccagggcagccagggctacacagaaaaatcctgtcttgggggaaa
aaaaaacttaataatgttttgccccttcaaatttatgtgctatagatatt
cgtccttaagctactcaatacaggcaggggaaaccagctagtagaagcta
ttttatcttccctgttatctcagttagctcagctctggactgatgtacct
gcaaactgtatctggcaaacataaactttataattctatgtagccatcac
cctgaaatgcagctaaggagccttaattataagccaaagaacacagccct
ctgtgcaaaggcatctattgggaagtattgtatttaaccagcagttctgc
caaatgacatgttctagctctccttacgcatccagcagcattgagcctct
tagaggtctaagcctcgtctgcctgtataaacaacatacctttgaccctg
atcaggacctgggttctggattactatatggtctgtgccaggttttggtt
ttatttgttttgttttgttttttaaatcacatcacagtacagttcttatt
agagtgcagtaaattttaaaacagatttttatttttcgaatgaactgtca
aaccagtctcctcattttatatttatgtgattgacttatgaaagtctaaa
tatgggattctgcatttagcctagttggtttttcgtttgcaagagtcaat
gaaccattttaatttgtcaaaaacattttgaatttttattcaaatatgcc
aggatattttaggcaaaaatgcattcactgattggcaaagacttcaaggt
agaaatttgatcagtgtgttcaagatgtttgtcttcaaatctcaccctgt
accaagcaaccaacagtcactggccacagttgctctcaggacttgaaatg
tggtttgtttgaatcaaagtcatctatgagcattgtactggctagttttg
tgtcacttgagctctggagtatcacagagaacggagcttcagttgggaag
ttcttccatgagatccactggtaaggcatttctcaattatggatcagggg
aaagccccattggtgggtggtaccatctctgggctgtagtctgggttcta
tagtagtagcagctgagcaagcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_36208877_36210018
seq2: B6Ng01-075H04.b_45_1175

seq1  GAATTCCCATTCACTCCTAGGAGCTAGAACCAGACTCTGTGGTCTACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATTCACTCCTAGGAGCTAGAACCAGACTCTGTGGTCTACAAG  50

seq1  AGCAGTGCAGGCTGGTGCCATCATCCTTTCTTGATTTTAGATCGTAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGCAGGCTGGTGCCATCATCCTTTCTTGATTTTAGATCGTAGAAG  100

seq1  TATAGAGTTGGTACTTGGAATGATGAAAAAATATCTAGAAATGAACAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGTTGGTACTTGGAATGATGAAAAAATATCTAGAAATGAACAGCA  150

seq1  GTGATTGTTGCCCAATATTGTTGAATATATTATATGCCATCAAACAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTGTTGCCCAATATTGTTGAATATATTATATGCCATCAAACAGTGG  200

seq1  CTTAAAATAGCTTAAAATTTCTCCAAAATTTCTTAAAAATGAAAAAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATAGCTTAAAATTTCTCCAAAATTTCTTAAAAATGAAAAAAACA  250

seq1  ACTATATTTAGAGGTAAAACTTTTCTATTTTGTATATTTTACCACAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATTTAGAGGTAAAACTTTTCTATTTTGTATATTTTACCACAATTT  300

seq1  TCTTCAAAAGAAAGTGAGTCTACTTATCCAAATGCTTCTATCCCTTCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAAAGAAAGTGAGTCTACTTATCCAAATGCTTCTATCCCTTCTAA  350

seq1  GACCTCCTTACCCCAATTTATAGCCCCAAACATGCATCTAAGCCTTCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCCTTACCCCAATTTATAGCCCCAAACATGCATCTAAGCCTTCATC  400

seq1  TCTGGGGTGTCTCTGGAGTGACCCATCTTGCTTTTTTATGAAGATGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGTGTCTCTGGAGTGACCCATCTTGCTTTTTTATGAAGATGAGAA  450

seq1  GCAATGTGTCCCACTTCCTGTAGCTACCCCAACAGTTTTTGATTAGCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTGTCCCACTTCCTGTAGCTACCCCAACAGTTTTTGATTAGCCTA  500

seq1  AGGTCCTTTGTTACTTCTAGAAGTGGATCCCTCAGGGCAGAGCCGGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTTTGTTACTTCTAGAAGTGGATCCCTCAGGGCAGAGCCGGGCTG  550

seq1  GAGAAAGCCTTTTATATTTCTGGGTCAGACTTAATGCACTATTGCCACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGCCTTTTATATTTCTGGGTCAGACTTAATGCACTATTGCCACAT  600

seq1  TTGGGTCATTAAGTCTTCAGGTATCAACAAACTAGATCCTCAAGGTGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCATTAAGTCTTCAGGTATCAACAAACTAGATCCTCAAGGTGGCA  650

seq1  AGACATCAGAAATATCCATTATCATTCAAGCATTGCCTCAATTATCACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCAGAAATATCCATTATCATTCAAGCATTGCCTCAATTATCACTG  700

seq1  TCTGTCTTGGTTAGGATTTTACTGCTGTAAACAGACACCATGACCAAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTGGTTAGGATTTTACTGCTGTAAACAGACACCATGACCAAGGC  750

seq1  AACTCTTACAAGGACATTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTACAAGGACATTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTC  800

seq1  AGTCCATTATTATCAAGGCAGGAACATGGCAGCATCCAGGCAGGCATGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATTATTATCAAGGCAGGAACATGGCAGCATCCAGGCAGGCATGGT  850

seq1  GCAGGAGGAGCTGAGAGTTCTACATCTTCATCTGAAGGCTGCTAGCAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGGAGCTGAGAGTTCTACATCTTCATCTGAAGGCTGCTAGCAGAA  900

seq1  TACTGGCTTCCAGGCAGCTAGGATGAAGGTCTTAAAGCTCACACCCACAG  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TACTGGCTTCCAGGCAGCTAGGATGAAGGTC-TAAAGCTCACACCCACAG  949

seq1  TGACACACCTACTCCAACAAAGCCACACCCACTCCAACAAGGCCACACCT  1000
      |||||||||||||||||| ||||||| |||||||||  | ||||||| ||
seq2  TGACACACCTACTCCAAC-AAGCCAC-CCCACTCCACAAGGGCCACA-CT  996

seq1  CCTAAAGTCACTCCCTAGGTCAGGAAAATACAAACCATCACCACAC-TGT  1049
      |||||||||||||||||||||| ||||||||||||||||| ||||| |||
seq2  CCTAAAGTCACTCCCTAGGTCA-GAAAATACAAACCATCA-CACACTTGT  1044

seq1  CCTTGTGACTTCTTGCCTGCCATGAATTCACACAACTCCAACATGGTTCC  1099
      ||||||||||||||| ||||||||||||| ||||||||  |||||||  |
seq2  CCTTGTGACTTCTTG-CTGCCATGAATTCCCACAACTC--ACATGGT--C  1089

seq1  TGTCTCTGAAAAAGGTCAGATCCTTGGGATCACCTCTTCAGAC  1142
      ||||||||||||||||||||| ||| |||||||||||||||||
seq2  TGTCTCTGAAAAAGGTCAGAT-CTTTGGATCACCTCTTCAGAC  1131

seq1: chr8_36374766_36375897
seq2: B6Ng01-075H04.g_68_1191 (reverse)

seq1  TGGCTTGCTCAGCCTGCT-CTCTTATAGAACCCAAGACTACCAGCCCAGA  49
      |||||||||||| ||||| ||  |||||||||| |||||| |||||||||
seq2  TGGCTTGCTCAG-CTGCTACTACTATAGAACCC-AGACTA-CAGCCCAGA  47

seq1  GATGGTACCACCCA-CAAGGGGCCTTTTCCCCTTGATCACTAATTGAGAA  98
      |||||||||||||| ||| ||| ||||  ||| |||||  |||||||| |
seq2  GATGGTACCACCCACCAATGGGGCTTT--CCCCTGATCCATAATTGAG-A  94

seq1  AATGCCTTACAGTTGGATCTCATGGAGGAACTTCCCCAACTGAAGCTCCT  148
      ||||||||||   ||||||||||||| |||||| ||||||||||||||| 
seq2  AATGCCTTACCAGTGGATCTCATGGAAGAACTT-CCCAACTGAAGCTCCG  143

seq1  TTCTCTGTGATAACTCCAGAGCTCAAGTTGACACAAAACTAGCCAGTACA  198
      ||||||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  TTCTCTGTGAT-ACTCCAGAGCTCAAG-TGACACAAAACTAGCCAGTACA  191

seq1  ATGCTCATAGATGACTTTGATTCAAACAAACCACATTTCAAGTCCTGAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCATAGATGACTTTGATTCAAACAAACCACATTTCAAGTCCTGAGA  241

seq1  GCAACTGTGGCCAGTGACTGTTGGTTGCTTGGTACAGGTTGAGAATTTGA  298
      |||||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  GCAACTGTGGCCAGTGACTGTTGGTTGCTTGGTACAGGGTGAG-ATTTGA  290

seq1  AGACAAACATCTTGAACACACTGATCAAATTTCTACCTTGAAGTCTTTGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAACATCTTGAACACACTGATCAAATTTCTACCTTGAAGTCTTTGC  340

seq1  CAATCAGTGAATGCATTTTTGCCTAAAATATCCTGGCATATTTGAATAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGTGAATGCATTTTTGCCTAAAATATCCTGGCATATTTGAATAAA  390

seq1  AATTCAAAATGTTTTTGACAAATTAAAATGGTTCATTGACTCTTGCAAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAAATGTTTTTGACAAATTAAAATGGTTCATTGACTCTTGCAAAC  440

seq1  GAAAAACCAACTAGGCTAAATGCAGAATCCCATATTTAGACTTTCATAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACCAACTAGGCTAAATGCAGAATCCCATATTTAGACTTTCATAAG  490

seq1  TCAATCACATAAATATAAAATGAGGAGACTGGTTTGACAGTTCATTCGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCACATAAATATAAAATGAGGAGACTGGTTTGACAGTTCATTCGAA  540

seq1  AAATAAAAATCTGTTTTAAAATTTACTGCACTCTAATAAGAACTGTACTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAATCTGTTTTAAAATTTACTGCACTCTAATAAGAACTGTACTG  590

seq1  TGATGTGATTTAAAAAACAAAACAAAACAAATAAAACCAAAACCTGGCAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGATTTAAAAAACAAAACAAAACAAATAAAACCAAAACCTGGCAC  640

seq1  AGACCATATAGTAATCCAGAACCCAGGTCCTGATCAGGGTCAAAGGTATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATATAGTAATCCAGAACCCAGGTCCTGATCAGGGTCAAAGGTATG  690

seq1  TTGTTTATACAGGCAGACGAGGCTTAGACCTCTAAGAGGCTCAATGCTGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATACAGGCAGACGAGGCTTAGACCTCTAAGAGGCTCAATGCTGC  740

seq1  TGGATGCGTAAGGAGAGCTAGAACATGTCATTTGGCAGAACTGCTGGTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCGTAAGGAGAGCTAGAACATGTCATTTGGCAGAACTGCTGGTTA  790

seq1  AATACAATACTTCCCAATAGATGCCTTTGCACAGAGGGCTGTGTTCTTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAATACTTCCCAATAGATGCCTTTGCACAGAGGGCTGTGTTCTTTG  840

seq1  GCTTATAATTAAGGCTCCTTAGCTGCATTTCAGGGTGATGGCTACATAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATAATTAAGGCTCCTTAGCTGCATTTCAGGGTGATGGCTACATAGA  890

seq1  ATTATAAAGTTTATGTTTGCCAGATACAGTTTGCAGGTACATCAGTCCAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAAGTTTATGTTTGCCAGATACAGTTTGCAGGTACATCAGTCCAG  940

seq1  AGCTGAGCTAACTGAGATAACAGGGAAGATAAAATAGCTTCTACTAGCTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGCTAACTGAGATAACAGGGAAGATAAAATAGCTTCTACTAGCTG  990

seq1  GTTTCCCCTGCCTGTATTGAGTAGCTTAAGGACGAATATCTATAGCACAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCCTGCCTGTATTGAGTAGCTTAAGGACGAATATCTATAGCACAT  1040

seq1  AAATTTGAAGGGGCAAAACATTATTAAGTTTTTTTTTCCCCCAAGACAGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGAAGGGGCAAAACATTATTAAGTTTTTTTTTCCCCCAAGACAGG  1090

seq1  ATTTTTCTGTGTAGCCCTGGCTGCCCTGGAATTC  1132
      ||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTGTGTAGCCCTGGCTGCCCTGGAATTC  1124