BAC Information

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BAC

Clone NameB6Ng01-076A12
Chromosome8 (Build37)
Map Location 15,742,392 - 15,896,359
singlet/doubletdoublet
Overlap geneLOC634008, Csmd1
Upstream geneDlgap2, C030037F17Rik, Cln8, Arhgef10, 2900016B01Rik, 5830468F06Rik, Kbtbd11, BB014433, Myom2, EG665599, EG234097, EG665619
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076A12.bB6Ng01-076A12.g
ACCDH892419DH892420
length1,2301,023
definitionDH892419|Mus musculus domesticus DNA, BAC clone: B6Ng01-076A12, 5' end.DH892420|Mus musculus domesticus DNA, BAC clone: B6Ng01-076A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,895,133 - 15,896,359)(15,742,392 - 15,743,414)
sequence
gaattctgctagtagagatgaacgtattataaattgaaatggctttgaag
tgctgcctgccccacgcacacacatgggctgagcactgatttcaccccat
aaagcctgtagtggcttccccaagtccttgccgcttactggcaatagatg
gctttccagaccgaatatctccctgcgtgctgcctctaatatcttcagag
ttccccaaactttccttcaatgcatagagagatttatttttattttattt
tattttattttattttattttattgatatggaaaatgatttccaacttta
tttatattctgtttataatctcaaacagcaatttttaaagagtcaacaca
tagtgaagtagctactatgccctctcctccccataaccttacacgaatat
tttctgctgagaatgcatggagactgggtggaggctatgtcattgcagtt
agaatctgattatgttctctcttttctctttagaacaagaccaaaagttc
aatataatggctatgctggccatgaaaacagtaatggacaagcttcattt
gaaaaccccatgtatgatacaaacttaaaacccacagaggccaaggctgt
gaggtttgacacgactctgaacacagtgtgtacagtggtatagccctcag
tgccccctaggaccgattcatagccatacctctgatggacaagcagtaaa
atcctttggtgccatataccaccccccttctactcttgccttgctgcagc
aaccttggccatcgtctgctggcataacgcagtgggaatttcttctcaac
catgaccgagtcttctgaggatcaaattgcaaatacatcttcatctggaa
agtgggttataaaagccttggctgctgcctccaccagacatcaagacacc
gacaacggcgagggcaaggaagactgtagtcttacagacaggtggtactt
aatgcctctgacttttgtgtcttttgtgtggccagatgcctttggatgta
gtcttctgagcatatggatacatccttcaagtgcggcgacaaatggtagc
aacttgatatgtgttggggttttctttctttttaactctattcctggaca
cgaattcttttcaaaagaaaacctttcctgggagaagacgtctttctgga
aaagtgactaacgtcaccttccgttcactccacacctgcctgaagacaag
gaccctggggatatcttcaggctccatttg
gaattctgaggtgttgataacactgggacatttttatagccagactcagg
gaaatgaaatcgctataggaaatgcccacctgacccagggcctgcctgct
tctttagaggttaaagatatgctgctgagcctgggggactccacctggct
ctgatgaagtcttgcattcctagatgccaataacagtggcatctgctgat
tttatttagcagctttgagtcaatcctgattcgagaagtaccactgtcat
tcagtatgtcaggaatgggaagaccatggtggaggacacagatggagctg
aagcaaagtacaggaagcagatccctgccttcagagccacaggaatcatc
caggcgcttgctgtaggtgatttacggttccaacatccataatccatgtt
ggtctgcaccggatgtcacgacattcaccttcaccaaatgcttttcactc
ttctgcagcagccttggtcttctcagaaggtcactttgatccttggagat
catggcgttacccaatattcatgcacacaagacagcggaggtgagtgaga
cactggctggactaggaggcaggaagactgcctactgagacattacagag
ctgaactgtgagaagaaaggccatcaagtcaatgatatcagaggtcccag
gacgtagagagcatcaactgtaattcaagagtctagagagtctgggaaga
tgggaagtaaccttgaatgaccttgcaaataggaaagtagcactgagtta
gtaaatgtttaaagacagacttgaaacagattcctaagaggtttttaaaa
gttggagatgaacgatgtgatagaaaaattggctgagagatttaactgtt
taatacacatatacacacatacatacacacacacactcatacacactctt
ctgccaccctcacacacacacacacacacacacacactcttatatacctc
ctaccccaaaaatacatatatacacccactctacagcttctcaacccaca
caatcatacacatcaccttatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_15895133_15896359
seq2: B6Ng01-076A12.b_45_1274 (reverse)

seq1  CCAATGGAGCCTGAAG--ATCCACAGAGCTCATGTC-TCAGGCAGG-GTG  46
      | ||||||||||||||  |||| ||| |  | |||| ||||||||| |||
seq2  CAAATGGAGCCTGAAGATATCCCCAGGGTCCTTGTCTTCAGGCAGGTGTG  50

seq1  GAGTGAAGCGAGTGT-ACGTGTGTGCATTTTCCAG-AAGACGTCTTCT-C  93
      |||||||  ||  || ||||  ||   |||||||| |||||||||||| |
seq2  GAGTGAACGGAAGGTGACGTTAGTCACTTTTCCAGAAAGACGTCTTCTCC  100

seq1  CAGGAAGGTTTTTCTTTTGTAAAGAATTCGTGTCCAGGGAATAGGGTTAA  143
      |||||| | |||||||||| |||||||||||||||| ||||||| |||||
seq2  CAGGAAAGGTTTTCTTTTGAAAAGAATTCGTGTCCA-GGAATAGAGTTAA  149

seq1  AAAGAAAAGAAAAACACAAAACACATATCAAGTTGCTACCATTTTGTCGC  193
      |||| |||||||| | |  |||||||||||||||||||||| ||||||||
seq2  AAAG-AAAGAAAACCCC--AACACATATCAAGTTGCTACCA-TTTGTCGC  195

seq1  CGCACCTGAAGGATGTATCCATATGCTCAGAAGACTACATCCAAAGGCAT  243
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACTTGAAGGATGTATCCATATGCTCAGAAGACTACATCCAAAGGCAT  245

seq1  CCTGGCCACAC-AGAGACACAAAAGTCAGAGGCATTAAGTACCACCTGTC  292
       |||||||||| | ||||||||||||||||||||||||||||||||||||
seq2  -CTGGCCACACAAAAGACACAAAAGTCAGAGGCATTAAGTACCACCTGTC  294

seq1  TGTAAGACTACAGTCTTCCTTGCCCTCGCCGTTGTCGGTGTCTTGATGTC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGACTACAGTCTTCCTTGCCCTCGCCGTTGTCGGTGTCTTGATGTC  344

seq1  TGGTGGAGGCAGCAGCC-AGGCTTTTATAATCCACTTTCCAGATGAAGAT  391
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  TGGTGGAGGCAGCAGCCAAGGCTTTTATAACCCACTTTCCAGATGAAGAT  394

seq1  GTATTTGCAATTTGATCCTCAGAAGACTCGGTCATGGTTGAGAAGAAATT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGCAATTTGATCCTCAGAAGACTCGGTCATGGTTGAGAAGAAATT  444

seq1  CCCACTGCGTTATGCCAGCAGACGATGGCCAAGGTTGCTGCAGCAAGGCA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGCGTTATGCCAGCAGACGATGGCCAAGGTTGCTGCAGCAAGGCA  494

seq1  AGAGTAGAAGGGGGGTGGTATATGGCACCAAAGGATTTTACTGCTTGTCC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGAAGGGGGGTGGTATATGGCACCAAAGGATTTTACTGCTTGTCC  544

seq1  ATCAGAGGTATGGCTATGAATCGGTCCTAGGGGGCACTGAGGGCTATACC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGGTATGGCTATGAATCGGTCCTAGGGGGCACTGAGGGCTATACC  594

seq1  ACTGTACACACTGTGTTCAGAGTCGTGTCAAACCTCACAGCCTTGGCCTC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACACACTGTGTTCAGAGTCGTGTCAAACCTCACAGCCTTGGCCTC  644

seq1  TGTGGGTTTTAAGTTTGTATCATACATGGGGTTTTCAAATGAAGCTTGTC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTTTTAAGTTTGTATCATACATGGGGTTTTCAAATGAAGCTTGTC  694

seq1  CATTACTGTTTTCATGGCCAGCATAGCCATTATATTGAACTTTTGGTCTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTGTTTTCATGGCCAGCATAGCCATTATATTGAACTTTTGGTCTT  744

seq1  GTTCTAAAGAGAAAAGAGAGAACATAATCAGATTCTAACTGCAATGACAT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAAAGAGAAAAGAGAGAACATAATCAGATTCTAACTGCAATGACAT  794

seq1  AGCCTCCACCCAGTCTCCATGCATTCTCAGCAGAAAATATTCGTGTAAGG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCACCCAGTCTCCATGCATTCTCAGCAGAAAATATTCGTGTAAGG  844

seq1  TTATGGGGAGGAGAGGGCATAGTAGCTACTTCACTATGTGTTGACTCTTT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGGAGGAGAGGGCATAGTAGCTACTTCACTATGTGTTGACTCTTT  894

seq1  AAAAATTGCTGTTTGAGATTATAAACAGAATATAAATAAAGTTGGAAATC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTGCTGTTTGAGATTATAAACAGAATATAAATAAAGTTGGAAATC  944

seq1  ATTTTCCATATCAATAAAATAAAATAAAATAAAATAAAATAAAATAAAAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCATATCAATAAAATAAAATAAAATAAAATAAAATAAAATAAAAA  994

seq1  TAAATCTCTCTATGCATTGAAGGAAAGTTTGGGGAACTCTGAAGATATTA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTCTCTATGCATTGAAGGAAAGTTTGGGGAACTCTGAAGATATTA  1044

seq1  GAGGCAGCACGCAGGGAGATATTCGGTCTGGAAAGCCATCTATTGCCAGT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGCACGCAGGGAGATATTCGGTCTGGAAAGCCATCTATTGCCAGT  1094

seq1  AAGCGGCAAGGACTTGGGGAAGCCACTACAGGCTTTATGGGGTGAAATCA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGGCAAGGACTTGGGGAAGCCACTACAGGCTTTATGGGGTGAAATCA  1144

seq1  GTGCTCAGCCCATGTGTGTGCGTGGGGCAGGCAGCACTTCAAAGCCATTT  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCAGCCCATGTGTGTGCGTGGGGCAGGCAGCACTTCAAAGCCATTT  1194

seq1  CAATTTCTAATACGTTCATCTCTACTAGCAGAATTC  1227
      |||||| |||||||||||||||||||||||||||||
seq2  CAATTTATAATACGTTCATCTCTACTAGCAGAATTC  1230

seq1: chr8_15742392_15743414
seq2: B6Ng01-076A12.g_70_1092

seq1  GAATTCTGAGGTGTTGATAACACTGGGACATTTTTATAGCCAGACTCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGGTGTTGATAACACTGGGACATTTTTATAGCCAGACTCAGG  50

seq1  GAAATGAAATCGCTATAGGAAATGCCCACCTGACCCAGGGCCTGCCTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAATCGCTATAGGAAATGCCCACCTGACCCAGGGCCTGCCTGCT  100

seq1  TCTTTAGAGGTTAAAGATATGCTGCTGAGCCTGGGGGACTCCACCTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGAGGTTAAAGATATGCTGCTGAGCCTGGGGGACTCCACCTGGCT  150

seq1  CTGATGAAGTCTTGCATTCCTAGATGCCAATAACAGTGGCATCTGCTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAAGTCTTGCATTCCTAGATGCCAATAACAGTGGCATCTGCTGAT  200

seq1  TTTATTTAGCAGCTTTGAGTCAATCCTGATTCGAGAAGTACCACTGTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTAGCAGCTTTGAGTCAATCCTGATTCGAGAAGTACCACTGTCAT  250

seq1  TCAGTATGTCAGGAATGGGAAGACCATGGTGGAGGACACAGATGGAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATGTCAGGAATGGGAAGACCATGGTGGAGGACACAGATGGAGCTG  300

seq1  AAGCAAAGTACAGGAAGCAGATCCCTGCCTTCAGAGCCACAGGAATCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGTACAGGAAGCAGATCCCTGCCTTCAGAGCCACAGGAATCATC  350

seq1  CAGGCGCTTGCTGTAGGTGATTTACGGTTCCAACATCCATAATCCATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGCTTGCTGTAGGTGATTTACGGTTCCAACATCCATAATCCATGTT  400

seq1  GGTCTGCACCGGATGTCACGACATTCACCTTCACCAAATGCTTTTCACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGCACCGGATGTCACGACATTCACCTTCACCAAATGCTTTTCACTC  450

seq1  TTCTGCAGCAGCCTTGGTCTTCTCAGAAGGTCACTTTGATCCTTGGAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAGCAGCCTTGGTCTTCTCAGAAGGTCACTTTGATCCTTGGAGAT  500

seq1  CATGGCGTTACCCAATATTCATGCACACAAGACAGCGGAGGTGAGTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCGTTACCCAATATTCATGCACACAAGACAGCGGAGGTGAGTGAGA  550

seq1  CACTGGCTGGACTAGGAGGCAGGAAGACTGCCTACTGAGACATTACAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCTGGACTAGGAGGCAGGAAGACTGCCTACTGAGACATTACAGAG  600

seq1  CTGAACTGTGAGAAGAAAGGCCATCAAGTCAATGATATCAGAGGTCCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTGTGAGAAGAAAGGCCATCAAGTCAATGATATCAGAGGTCCCAG  650

seq1  GACGTAGAGAGCATCAACTGTAATTCAAGAGTCTAGAGAGTCTGGGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTAGAGAGCATCAACTGTAATTCAAGAGTCTAGAGAGTCTGGGAAGA  700

seq1  TGGGAAGTAACCTTGAATGACCTTGCAAATAGGAAAGTAGCACTGAGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGTAACCTTGAATGACCTTGCAAATAGGAAAGTAGCACTGAGTTA  750

seq1  GTAATTGTTT-AAGACAGACTTGAAACAGATTCCTAAGAGGTTTTTAAAA  799
      |||| ||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGTTTAAAGACAGACTTGAAACAGATTCCTAAGAGGTTTTTAAAA  800

seq1  GTTGGAGATGAACGATGTGATAGAAAAATTGGCTGAGAGATTTAACTGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGATGAACGATGTGATAGAAAAATTGGCTGAGAGATTTAACTGTT  850

seq1  TAAATACACATATACACACATACATACACACACACACTCATACACACTC-  898
      | ||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  T-AATACACATATACACACATACATACACACACACACTCATACACACTCT  899

seq1  TCTGCCACCCTCACACACACACACACACACACACACACACTCATATACAC  948
      |||||||||||||||||||||||||||||||||||||| || ||||||  
seq2  TCTGCCACCCTCACACACACACACACACACACACACACTCTTATATACCT  949

seq1  ACTACCCCAAAAATACATATATACACACACTC-ACAGCCCCCTCCACACA  997
       ||||||||||||||||||||||||| ||||| ||||   | ||   || 
seq2  CCTACCCCAAAAATACATATATACACCCACTCTACAG---CTTCTCAACC  996

seq1  CACACACACATACACATCA-CATATGA  1023
      ||||||  ||||||||||| | |||||
seq2  CACACAATCATACACATCACCTTATGA  1023