BAC Information

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BAC

Clone NameB6Ng01-076C17
Chromosome16 (Build37)8 (Build37)
Map Location 64,757,858 - 64,757,93832,147,698 - 32,148,834
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEpha3, LOC100043540, Ckt2
Downstream gene4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931, Pou1f1, Chmp2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076C17.bB6Ng01-076C17.g
ACCDH892515DH892516
length801,129
definitionDH892515|Mus musculus domesticus DNA, BAC clone: B6Ng01-076C17, 5' end.DH892516|Mus musculus domesticus DNA, BAC clone: B6Ng01-076C17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(64,757,858 - 64,757,938)(32,147,698 - 32,148,834)
sequence
acagatctctctctctctctctctttttctctctctctctctctctctct
ctctccacacacacccatataaaacacaca
gaattccaaagtgtggtagagaaccaggcaaccagatctgtttttagata
atctttccctccagttccatcagagatccaaaaatggtatttcctatcaa
aatcatataagtaattcagagtctatgtccctgagctgacatacacatta
cccacatattatcccttaatatcttcccctggcagacagactccagcttg
ctcaccaacttggaatatataaagacaagactcataaaaggtttgttatg
tggtaaataaataaataaataaaattgtgtgctccgagcatgcatatctt
ttatgtacagaaacgctcaagacggctacacaaggtgccacacatctatg
aggctgagaccggagaaagaagaccccaggcctgagaccagcctgtgtga
ctgaatggaaatgggaaactcaaacatggttattagcatttgaaagaagg
cagtttacaaaggaagactagcaaccctttcttacctaggcttcactata
gaacggagcttacaaaatgaaaacacaaggagaatgtgtggatgtgtaag
gttggttgtatgtgcggggcctttaatgaatggcctgaagcttgggcaat
ccttccttcgttcactagctcactctcatgtttttaggaatgcttttcct
ttattaataagctgtctctgtttctatttctattcttgcatccctggtcc
agtcctttgccctgggacacaagagcctgaatccagtgtcctctcaattc
agatccatgacccagcaagaagtggatctgccccttttctttccctccct
gtgggtgtcagcctaaagccctaggcgtgcttcctcaacactctggcctt
tctcactattaccagacctccatgccgaagtaaaaagcacggctttttac
ccaactccctcctgattgctgtgaactgccagtttctctaccctggtggt
tttctcatgaacgaattcattatccccaagtctctgtcaagtccgttttt
aacttatttaataatatgactagctcagaaggagaacttggtttgcctca
caacaccagtccccgtaggcttcacacccagttacactgagactatatac
cagtaattctagaatgccctcagtaatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_64757858_64757938
seq2: B6Ng01-076C17.b_60_132 (reverse)

seq1  TGTGTG-----TGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  45
      ||||||     | || ||||| | | ||||||||||||||||||||||||
seq2  TGTGTGTTTTATATGGGTGTGTGTG-GAGAGAGAGAGAGAGAGAGAGAGA  49

seq1  GAGAGGATGTGGTTTTAAAAGAGAGAGAGAGAGAGA  81
      ||||            ||||||||||||||||||||
seq2  GAGA------------AAAAGAGAGAGAGAGAGAGA  73

seq1: chr8_32147698_32148834
seq2: B6Ng01-076C17.g_68_1196

seq1  GAATTCCAAAGTGTGGTAGAGAACCAGGCAACCAGATCTGTTTTTAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGTGTGGTAGAGAACCAGGCAACCAGATCTGTTTTTAGATA  50

seq1  ATCTTTCCCTCCAGTTCCATCAGAGATCCAAAAATGGTATTTCCTATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCCCTCCAGTTCCATCAGAGATCCAAAAATGGTATTTCCTATCAA  100

seq1  AATCATATAAGTAATTCAGAGTCTATGTCCCTGAGCTGACATACACATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATATAAGTAATTCAGAGTCTATGTCCCTGAGCTGACATACACATTA  150

seq1  CCCACATATTATCCCTTAATATCTTCCCCTGGCAGACAGACTCCAGCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATATTATCCCTTAATATCTTCCCCTGGCAGACAGACTCCAGCTTG  200

seq1  CTCACCAACTTGGAATATATAAAGACAAGACTCATAAAAGGTTTGTTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCAACTTGGAATATATAAAGACAAGACTCATAAAAGGTTTGTTATG  250

seq1  TGGTAAATAAATAAATAAATAAAATTGTGTGCTCCGAGCATGCATATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAATAAATAAATAAATAAAATTGTGTGCTCCGAGCATGCATATCTT  300

seq1  TTATGTACAGAAACGCTCAAGACGGCTACACAAGGTGCCACACATCTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTACAGAAACGCTCAAGACGGCTACACAAGGTGCCACACATCTATG  350

seq1  AGGCTGAGACCGGAGAAAGAAGACCCCAGGCCTGAGACCAGCCTGTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAGACCGGAGAAAGAAGACCCCAGGCCTGAGACCAGCCTGTGTGA  400

seq1  CTGAATGGAAATGGGAAACTCAAACATGGTTATTAGCATTTGAAAGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGGAAATGGGAAACTCAAACATGGTTATTAGCATTTGAAAGAAGG  450

seq1  CAGTTTACAAAGGAAGACTAGCAACCCTTTCTTACCTAGGCTTCACTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTACAAAGGAAGACTAGCAACCCTTTCTTACCTAGGCTTCACTATA  500

seq1  GAACGGAGCTTACAAAATGAAAACACAAGGAGAATGTGTGGATGTGTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGGAGCTTACAAAATGAAAACACAAGGAGAATGTGTGGATGTGTAAG  550

seq1  GTTGGTTGTATGTGCGGGGCCTTTAATGAATGGCCTGAAGCTTGGGCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTGTATGTGCGGGGCCTTTAATGAATGGCCTGAAGCTTGGGCAAT  600

seq1  CCTTCCTTCGTTCACTAGCTCACTCTCATGTTTTTAGGAATGCTTTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCGTTCACTAGCTCACTCTCATGTTTTTAGGAATGCTTTTCCT  650

seq1  TTATTAATAAGCTGTCTCTGTTTCTATTTCTATTCTTGCATCCCTGGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAATAAGCTGTCTCTGTTTCTATTTCTATTCTTGCATCCCTGGTCC  700

seq1  AGTCCTTTGCCCTGGGACACAAGAGCCTGAATCCAGTGTCCTCTCAATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTTGCCCTGGGACACAAGAGCCTGAATCCAGTGTCCTCTCAATTC  750

seq1  AGATCCATGACCCAGCAAGAAGTGGATCTGCCCCTTTTCTTTCCCTCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCATGACCCAGCAAGAAGTGGATCTGCCCCTTTTCTTTCCCTCCCT  800

seq1  GTGGGTGTCAGCCTAAAG-CCTAGGCGTGCTTCCTCAACACTCTGGCCTT  849
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTGGGTGTCAGCCTAAAGCCCTAGGCGTGCTTCCTCAACACTCTGGCCTT  850

seq1  TCTCACTATTACCCAGACCTCCATGCCCGAAGTAAAAAGCACGGCTTTTT  899
      ||||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  TCTCACTATTA-CCAGACCTCCATG-CCGAAGTAAAAAGCACGGCTTTTT  898

seq1  ACCCAACTCCCCTCCTGATTGCTGTGAAACTGCCAGTTTCTCTACCCTGG  949
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  ACCCAACT-CCCTCCTGATTGCTGTG-AACTGCCAGTTTCTCTACCCTGG  946

seq1  TGGTTTTCTCATGAACGAATTCAATTATCCCCAAGTCTCTGTCCAAGTCC  999
      |||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  TGGTTTTCTCATGAACGAATTC-ATTATCCCCAAGTCTCTGT-CAAGTCC  994

seq1  GTTTTTTAACTTATTTAATAATAAGACTAAGCTCAGAAGGAGATC-TGGT  1048
      | ||||||||||||||||||||| |||| |||||||||||||| | ||||
seq2  G-TTTTTAACTTATTTAATAATATGACT-AGCTCAGAAGGAGAACTTGGT  1042

seq1  TTTGCTCAGCAACACCAGTCACACGTAGGCTACACA-CCAGTTACACTGA  1097
      ||  |||| ||||||||||| | |||||||| |||| |||||||||||||
seq2  TTGCCTCA-CAACACCAGTC-CCCGTAGGCTTCACACCCAGTTACACTGA  1090

seq1  GACTATATACCAGTAATACTAGACTGCCCATCAGTAATGC  1137
      ||||||||||||||||| ||||| ||||| ||||||||||
seq2  GACTATATACCAGTAATTCTAGAATGCCC-TCAGTAATGC  1129