BAC Information

Click to search

BAC

Clone NameB6Ng01-077B05
Chromosome8 (Build37)
Map Location 28,101,974 - 28,261,431
singlet/doubletdoublet
Overlap geneErlin2, Prosc, Gpr124, Brf2, Rab11fip1
Upstream gene4930444A02Rik, Fnta, Hook3, 1700047A11Rik, Rnf170, Thap1, Zfp703
Downstream geneGot1l1, Adrb3, Eif4ebp1, LOC732482, Tex24, Chrnb3, Chrna6, 4921537P18Rik, Gm1698, EG666422
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077B05.bB6Ng01-077B05.g
ACCDH893145DH893146
length1,192932
definitionDH893145|Mus musculus domesticus DNA, BAC clone: B6Ng01-077B05, 5' end.DH893146|Mus musculus domesticus DNA, BAC clone: B6Ng01-077B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,101,974 - 28,103,177)(28,260,499 - 28,261,431)
sequence
gaattccatttgtcaggaacatttgcgaaagtgtttcacagaggcactaa
cgggactatggctcaatctcatcaagctaccatatcagaacacatcacac
catgctatccagttaatcagacccattgactaacagggaaaacaacaaag
ggtcttgaatgaattgtcacatgctccaaaaatgaccctgctgcctcttc
tcatagggcacttgcctctaacagcaaggataatatgaagacatgatcct
tgaagacatccagtgcacagagtggatgtctagaggggagtcagtcaggt
gatgaacaggcgccatccatccggctgtcctcaagcccattgattgttca
tagagaaaactaggtcagtgaagaggatgagggtaaaggttataccacgg
ataaaggagaagttcatctcagctcacctccaccccctccctcagatctc
accacacagaggctccccacaccctctgagccctgtttccctggacaaag
ttgatgctgatatcatacgggaggcaagaatttgatagtgtgggtgtgtg
ataccagcgccaagaagttagaaccagaatggctgtgagtttgaggctag
cctgggctacataagaagttccatgacattccaaagtgagatactgtctc
aaaaatagaaggggagggaaggggaaagaaagggaaggaaagtaaagaaa
cacataccccaccctcccagggatggaatactctggccaccaaaggccaa
cactaagggcaaagcagaaggctcagagcctcacagagatcaagacccac
accctccccagagctgaggcctccaccttacaaagagccacagatgtgag
cactttcagtggcctataagtgagcctccctaacgaaagggctagggacc
tctgatgtatttggtgacaacgatggcctcacagtgcaatttctaggcag
ctaaaggttggcccaagtgataatgattggtggtcactgtcatcagtggt
caccaatgggtactgtcaatagaatgggcccggagtcaaataaatccaag
tgggtcgctggacagaactgagccctctcctctataacataactgatgct
tactggtgtgtgtattaaaacactgggctgacctgggcacagcatttcta
caacggaggtctacgttgcttcgtaagtcttgacacatttgc
gaattccacaggagctaagtcgtgagctggatttggggccagagatgctt
cccccccttcccccttgcctgtcttgcaggcagcgggtctttgagatggg
cacgtctcagcttcgtggttactggaggtttaaggactctttccttgtct
ctccaggcctcaccctgtgaagcccatgaacacaacagccaccaagattg
caaactctagtttgggaaccgccaccatcatcactgagaacctgatcagc
gaggccctcatgaaggtgagtgtccagagaagacgcggtgaggggtttgg
taagattgcggagcttgtgtgtatagagtcgcccgcccttacagctggcc
tcagctgttgcagccacactgggggctgatgagtagggtgggggccagcc
tgggcaacgtaggaagatctatccgaagaaaccgcagccaaagttaaagt
gcttggccggcaggcagttctgggaagtccttactccggtgtctctggag
tctggataacctccgagagcccccagactttccattgactgggtagtcac
gtttccttatgatgagctgttccttactgaattcttttttgtctctagca
gtgtgagtcactgcactcactgtctgtttgtcaagtatggtggtactcat
ttgtttgtttgttttgtttctgaaaaagacagggtttctgtagccccagc
tagcctagaactcactgtgtagcccaggttaccctcaactcatgacaacc
tcatgactcagcctcctgggtgctggggattacagggccggtgccgccac
atcacctgacactttctctctctctctcttctctctctctctctttctct
ctcttaaaagaatttctttcccatctttcctatctttagacaaaaataaa
attcttgataagatgtctggggtttgtttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_28101974_28103177
seq2: B6Ng01-077B05.b_46_1237

seq1  GAATTCCATTTGTCAGGAACATTTGCGAAAGTGTTTCACAGAGGCACTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTGTCAGGAACATTTGCGAAAGTGTTTCACAGAGGCACTAA  50

seq1  CGGGACTATGGCTCAATCTCATCAAGCTACCATATCAGAACACATCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGACTATGGCTCAATCTCATCAAGCTACCATATCAGAACACATCACAC  100

seq1  CATGCTATCCAGTTAATCAGACCCATTGACTAACAGGGAAAACAACAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTATCCAGTTAATCAGACCCATTGACTAACAGGGAAAACAACAAAG  150

seq1  GGTCTTGAATGAATTGTCACATGCTCCAAAAATGACCCTGCTGCCTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGAATGAATTGTCACATGCTCCAAAAATGACCCTGCTGCCTCTTC  200

seq1  TCATAGGGCACTTGCCTCTAACAGCAAGGATAATATGAAGACATGATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGGGCACTTGCCTCTAACAGCAAGGATAATATGAAGACATGATCCT  250

seq1  TGAAGACATCCAGTGCACAGAGTGGATGTCTAGAGGGGAGTCAGTCAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACATCCAGTGCACAGAGTGGATGTCTAGAGGGGAGTCAGTCAGGT  300

seq1  GATGAACAGGCGCCATCCATCCGGCTGTCCTCAAGCCCATTGATTGTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACAGGCGCCATCCATCCGGCTGTCCTCAAGCCCATTGATTGTTCA  350

seq1  TAGAGAAAACTAGGTCAGTGAAGAGGATGAGGGTAAAGGTTATACCACGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAAACTAGGTCAGTGAAGAGGATGAGGGTAAAGGTTATACCACGG  400

seq1  ATAAAGGAGAAGTTCATCTCAGCTCACCTCCACCCCCTCCCTCAGATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGAGAAGTTCATCTCAGCTCACCTCCACCCCCTCCCTCAGATCTC  450

seq1  ACCACACAGAGGCTCCCCACACCCTCTGAGCCCTGTTTCCCTGGACAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACAGAGGCTCCCCACACCCTCTGAGCCCTGTTTCCCTGGACAAAG  500

seq1  TTGATGCTGATATCATACGGGAGGCAAGAATTTGATAGTGTGGGTGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCTGATATCATACGGGAGGCAAGAATTTGATAGTGTGGGTGTGTG  550

seq1  ATACCAGCGCCAAGAAGTTAGAACCAGAATGGCTGTGAGTTTGAGGCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGCGCCAAGAAGTTAGAACCAGAATGGCTGTGAGTTTGAGGCTAG  600

seq1  CCTGGGCTACATAAGAAGTTCCATGACATTCCAAAGTGAGATACTGTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCTACATAAGAAGTTCCATGACATTCCAAAGTGAGATACTGTCTC  650

seq1  AAAAATAGAAGGGGAGGGAAGGGGAAAGAAAGGGAAGGAAAGTAAAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGAAGGGGAGGGAAGGGGAAAGAAAGGGAAGGAAAGTAAAGAAA  700

seq1  CACATACCCCACCCTCCCAGGGATGGAATACTCTGGCCACCAAAGGCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACCCCACCCTCCCAGGGATGGAATACTCTGGCCACCAAAGGCCAA  750

seq1  CACTAAGGGCAAAGCAGAAGGCTCAGAGCCTCACAGAGATCAAGACCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGGGCAAAGCAGAAGGCTCAGAGCCTCACAGAGATCAAGACCCAC  800

seq1  ACCCTCCCCAGAGCTGAGGCCTCCACCTTACAAAGAGCCACAGATGTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCCCAGAGCTGAGGCCTCCACCTTACAAAGAGCCACAGATGTGAG  850

seq1  CACTTTCAGTGGCCTATAAGTGAGCCTCCCTAACGAAAGGGCTAGGGACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCAGTGGCCTATAAGTGAGCCTCCCTAACGAAAGGGCTAGGGACC  900

seq1  TCTGATGTATTTGGTGACAACGATGGCCTCACAGTGCAATTTCTAGGCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGTATTTGGTGACAACGATGGCCTCACAGTGCAATTTCTAGGCAG  950

seq1  CTAAAGGTTGGCCCAAAGTGATAATGATTGGTGGTCACTGTCATCAGTGG  1000
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTAAAGGTTGGCCC-AAGTGATAATGATTGGTGGTCACTGTCATCAGTGG  999

seq1  TCACCAATGGGTACTGTCAATAGAATGGGCTCGGAGTTCAAATGAAATCG  1050
      |||||||||||||||||||||||||||||| ||||| |||||| ||  | 
seq2  TCACCAATGGGTACTGTCAATAGAATGGGCCCGGAG-TCAAATAAATCCA  1048

seq1  AGTGGGTCGCTGGGACCAGACTTGAGCCCTTCTCTCCTATAACATTAACT  1100
      |||||||||||||   ||||  ||||||| ||||  |||||||| |||||
seq2  AGTGGGTCGCTGG--ACAGAACTGAGCCC-TCTCCTCTATAACA-TAACT  1094

seq1  GGATGCTTACT-GTGTGTGTA-TCAGACACTGGGCTGGCACTGGGCACAG  1148
       |||||||||| ||||||||| | | ||||||||||| | ||||||||| 
seq2  -GATGCTTACTGGTGTGTGTATTAAAACACTGGGCTGAC-CTGGGCACA-  1141

seq1  GCATTTTCATCAACGGATGTCTACGGTTGCCTTCAGTAAGTCTTGACACA  1198
      ||| ||||  ||||||| |||||| |||| |||| |||||||||||||||
seq2  GCA-TTTCTACAACGGAGGTCTAC-GTTG-CTTC-GTAAGTCTTGACACA  1187

seq1  CTTTGC  1204
       |||||
seq2  -TTTGC  1192

seq1: chr8_28260499_28261431
seq2: B6Ng01-077B05.g_70_1001 (reverse)

seq1  GAGAAACAAAACCCAGAACATCTGTATCAAGAATTTTATATTTTTGTCTA  50
      |||||||||| ||||| |||||| ||||||||||||  ||||||||||||
seq2  GAGAAACAAACCCCAG-ACATCT-TATCAAGAATTT--TATTTTTGTCTA  46

seq1  AAGATAAGAAAGATGGAGAAAGAAAATCTTTTTAGAGAGAGAGAGAGAGA  100
      |||||| ||||||||| |||||||| |||||| ||||||||| |||||||
seq2  AAGATAGGAAAGATGG-GAAAGAAATTCTTTTAAGAGAGAGAAAGAGAGA  95

seq1  GAGAGAG-AGAGAGAGAGAGAGAAAGTGTCAGGTGATGTGGCGGCACCGG  149
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAAGAGAGAGAGAGAGAAAGTGTCAGGTGATGTGGCGGCACCGG  145

seq1  -CCTGTAAT-CCCAGCACCCAGGAGGCTGAGTCATGAGGTTGTCATGAGT  197
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTAATCCCCAGCACCCAGGAGGCTGAGTCATGAGGTTGTCATGAGT  195

seq1  TGAGGGTAACCTGGGCTACACAGTGAGTTCTAGGCTAGCTGGGGCTACAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTAACCTGGGCTACACAGTGAGTTCTAGGCTAGCTGGGGCTACAG  245

seq1  AAACCCTGTCTTTTTCAGAAAC-AAACAAACAAACAAATGAGTACCACCA  296
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAACCCTGTCTTTTTCAGAAACAAAACAAACAAACAAATGAGTACCACCA  295

seq1  TACTTGACAAACAGACAGTGAGTGCAGTGACTCACACTGCTAGAGACAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGACAAACAGACAGTGAGTGCAGTGACTCACACTGCTAGAGACAAA  345

seq1  AAAGAATTCAGTAAGGAACAGCTCATCATAAGGAAACGTGACTACCCAGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTCAGTAAGGAACAGCTCATCATAAGGAAACGTGACTACCCAGT  395

seq1  CAATGGAAAGTCTGGGGGCTCTCGGAGGTTATCCAGACTCCAGAGACACC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAAAGTCTGGGGGCTCTCGGAGGTTATCCAGACTCCAGAGACACC  445

seq1  GGAGTAAGGACTTCCCAGAACTGCCTGCCGGCCAAGCACTTTAACTTTGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAAGGACTTCCCAGAACTGCCTGCCGGCCAAGCACTTTAACTTTGG  495

seq1  CTGCGGTTTCTTCGGATAGATCTTCCTACGTTGCCCAGGCTGGCCCCCAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGTTTCTTCGGATAGATCTTCCTACGTTGCCCAGGCTGGCCCCCAC  545

seq1  CCTACTCATCAGCCCCCAGTGTGGCTGCAACAGCTGAGGCCAGCTGTAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCATCAGCCCCCAGTGTGGCTGCAACAGCTGAGGCCAGCTGTAAG  595

seq1  GGCGGGCGACTCTATACACACAAGCTCCGCAATCTTACCAAACCCCTCAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGCGACTCTATACACACAAGCTCCGCAATCTTACCAAACCCCTCAC  645

seq1  CGCGTCTTCTCTGGACACTCACCTTCATGAGGGCCTCGCTGATCAGGTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTCTTCTCTGGACACTCACCTTCATGAGGGCCTCGCTGATCAGGTTC  695

seq1  TCAGTGATGATGGTGGCGGTTCCCAAACTAGAGTTTGCAATCTTGGTGGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGATGATGGTGGCGGTTCCCAAACTAGAGTTTGCAATCTTGGTGGC  745

seq1  TGTTGTGTTCATGGGCTTCACAGGGTGAGGCCTGGAGAGACAAGGAAAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTTCATGGGCTTCACAGGGTGAGGCCTGGAGAGACAAGGAAAGA  795

seq1  GTCCTTAAACCTCCAGTAACCACGAAGCTGAGACGTGCCCATCTCAAAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTAAACCTCCAGTAACCACGAAGCTGAGACGTGCCCATCTCAAAGA  845

seq1  CCCGCTGCCTGCAAGACAGGCAAGGGGGAAGGGGGGGAAGCATCTCTGGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCTGCCTGCAAGACAGGCAAGGGGGAAGGGGGGGAAGCATCTCTGGC  895

seq1  CCCAAATCCAGCTCACGACTTAGCTCCTGTGGAATTC  933
      |||||||||||||||||||||||||||||||||||||
seq2  CCCAAATCCAGCTCACGACTTAGCTCCTGTGGAATTC  932