BAC Information

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BAC

Clone NameB6Ng01-077B06
Chromosome8 (Build37)
Map Location 19,952,054 - 19,985,472
singlet/doubletdoublet
Overlap geneLOC100040599, EG665822
Upstream geneDefb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567, LOC547150
Downstream gene6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077B06.bB6Ng01-077B06.g
ACCDH893147DH893148
length1,173156
definitionDH893147|Mus musculus domesticus DNA, BAC clone: B6Ng01-077B06, 5' end.DH893148|Mus musculus domesticus DNA, BAC clone: B6Ng01-077B06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,952,054 - 19,953,238)(19,985,317 - 19,985,472)
sequence
gaattcacttttcagcaattgactatgattgctgactgctctcctcccac
cttttctcaagagaaaatatgaggaatacttagctcttaattaaaacaca
aacaaaggtgcaagcgcacgcaaacacacaaacacacacacacacacact
aaaaagaattaaagacaagatcgggcatgctcagggtggtttggctgtag
acacttatggaagtctaaaaggaaggattccaggcctgaaggagatagga
actccagagaatgaccaaccaccagaatcaaataacatgaaccctcaggg
cactcagagatggaacaatgaaacaaagaacaaacatgggttggacggat
atctccgagcacctatgtagcagaggggcagctaggtcttcacatgggtc
ccaatcaactggaatgggggtatcaaaaaaagctgttcatcctacctcag
ttttattcttctagctgagctactttttctgtcctcagagagagacgaag
tgccagggtttggacatacagggagtcccaaactgctcagaggtgaagtg
gaggaggggtagggagagactgtgggactgggtgaccaggagggggtcac
tgagctagatgtaaacataagaaaaaaattaaattaaatttttacagaaa
tcattaaagttttgaaatgtatcttaaatcacagaaagaactgttatttg
gaaataatggctcaacataaacaacagatatacatgtctactaaacagaa
aatttcagcataaacagatgtattccatatggaaaaagcatgtggcattg
taagagcaaactctttcagagctatatattcacagaattcagtacaagat
tttataacgcttattaaagtagtagactctgcggaaagaaatgaactact
tatattattcactatgaaagctccatctgaaatggggaagaaaatgtctt
gaactgccgaatcacccaaagttgctgggtacctgttgctaggacagttt
aggaacatctcccatgaacgtagtttctgctgacttggactttcagactc
aacatcatttgaaccctgcttggtactggtgattacgtatggtatattct
aaagaattggcttattgcgtctcttgagtcacagtttaagtttcaaactt
aaggaactggggggtttatcatg
cagaaatttctccctctctaaggtgactctgaaagcctgggttgactagc
aacattggcaaatcctgaaggcctaccaggctttggcgccagggtcccag
gaagtgagtgactcttgccttgggctgcaatagaattgttgggggtgggg
tggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_19952054_19953238
seq2: B6Ng01-077B06.b_46_1218

seq1  GAATTCACTTTTCAGCAATTGACTATGATTGCTGACTGCTCTCCTCCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTTCAGCAATTGACTATGATTGCTGACTGCTCTCCTCCCAC  50

seq1  CTTTTCTCAAGAGAAATTATGAGGAATACTTAGCTCTTAATTAAAACACA  100
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTTTTCTCAAGAGAAAATATGAGGAATACTTAGCTCTTAATTAAAACACA  100

seq1  AACAAAGGTGCACGCGCACGCAAACACACAAACACACACACACACACACT  150
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AACAAAGGTGCAAGCGCACGCAAACACACAAACACACACACACACACACT  150

seq1  AAAAAGAATTAAAGACAAGATCGGGCATGCTCAGGGTGGTTTGGCTGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAATTAAAGACAAGATCGGGCATGCTCAGGGTGGTTTGGCTGTAG  200

seq1  ACACTTATGGAAGTCTAAAAGGAAGGATTCCAGGCCTGAAGGAGATAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTATGGAAGTCTAAAAGGAAGGATTCCAGGCCTGAAGGAGATAGGA  250

seq1  ACTCCAGAGAATGACCAACCACCAGAATCAAATAACATGAACCCTCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGAGAATGACCAACCACCAGAATCAAATAACATGAACCCTCAGGG  300

seq1  CACTCAGAGATGGAACAATGAAACAAAGAACAAACATGGGTTGGACGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGAGATGGAACAATGAAACAAAGAACAAACATGGGTTGGACGGAT  350

seq1  ATCTCCGAGCACCTATGTAGCAGAGGGGCAGCTAGGTCTTCACATGGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCGAGCACCTATGTAGCAGAGGGGCAGCTAGGTCTTCACATGGGTC  400

seq1  CCAATCAACTGGAATGGGGGTATCAAAAAAAGCTGTTCATCCTACCTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCAACTGGAATGGGGGTATCAAAAAAAGCTGTTCATCCTACCTCAG  450

seq1  TTTTATTCTTCTAGCTGAGCTACTTTTTCTGTCCTCAGAGAGAGAAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTTATTCTTCTAGCTGAGCTACTTTTTCTGTCCTCAGAGAGAGACGAAG  500

seq1  TGCCAGGGTTTGGACATACAGGGAGTCCCAAACTGCTCAGAGGTGAAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGGTTTGGACATACAGGGAGTCCCAAACTGCTCAGAGGTGAAGTG  550

seq1  GAGGAGGGGCAGGGAGAGACTGTGGGACTGGGTGACCAGGAGGGGGTCAC  600
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGGGTAGGGAGAGACTGTGGGACTGGGTGACCAGGAGGGGGTCAC  600

seq1  TGAGCTAGATGTAAACATAAGAAAAAAATTAAATTAAATTTTTACAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTAGATGTAAACATAAGAAAAAAATTAAATTAAATTTTTACAGAAA  650

seq1  TCATTAAAGTTTTGAAATGTATCTTCAATCACAGAAAGAACTGTTATTTG  700
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCATTAAAGTTTTGAAATGTATCTTAAATCACAGAAAGAACTGTTATTTG  700

seq1  GAAATAATGGCTCAACATAAACAACAGATATACACGTCTACTAAACAGAA  750
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAAATAATGGCTCAACATAAACAACAGATATACATGTCTACTAAACAGAA  750

seq1  AATTTCAGCATAAACAGATGTATTCCATATGGAAAAAGCATGTGGCATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGCATAAACAGATGTATTCCATATGGAAAAAGCATGTGGCATTG  800

seq1  TAAGAGCAAACTCTTTCAGAGCTATATATTCACAGAATTCAGTACAAGA-  849
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAAGAGCAAACTCTTTCAGAGCTATATATTCACAGAATTCAGTACAAGAT  850

seq1  TTTATAACGCTAATTAAAGTAGTAGACTCTGCGGAAAGAAATGAACTACT  899
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTATAACGCTTATTAAAGTAGTAGACTCTGCGGAAAGAAATGAACTACT  900

seq1  TATA-TATCCACTATGAAAGCTCCATCTGAAATGGGGAAGAAAAATGTCT  948
      |||| ||| ||||||||||||||||||||||||||||||| |||||||||
seq2  TATATTATTCACTATGAAAGCTCCATCTGAAATGGGGAAG-AAAATGTCT  949

seq1  TGAACTGCCGAATCA-CCAAAGTTGCTGGGTACCTG-TGCTAGGACAGTT  996
      ||||||||||||||| |||||||||||||||||||| |||||||||||||
seq2  TGAACTGCCGAATCACCCAAAGTTGCTGGGTACCTGTTGCTAGGACAGTT  999

seq1  TAAGAACATCTCCCAGTGAAAGGTAGTTTTCTGCTGACTTGGACATTTCA  1046
      || |||||||||||| || || |||| ||||||||||||||||| |||| 
seq2  TAGGAACATCTCCCA-TG-AACGTAG-TTTCTGCTGACTTGGAC-TTTC-  1044

seq1  AGACTCAAACATCATTTGGAAACACTGCTTGGTACCTGTGATTACGTATG  1096
      |||||| |||||||||||  ||| |||||||||||  |||||||||||||
seq2  AGACTC-AACATCATTTG--AACCCTGCTTGGTACTGGTGATTACGTATG  1091

seq1  GTATAATTCTAAAGAAATGGCTTATGCTGTCATCTTTGAGGTCACAGGTT  1146
      |||| ||||||||||| ||||||||   ||| || |||| |||||||  |
seq2  GTAT-ATTCTAAAGAATTGGCTTATTGCGTC-TC-TTGA-GTCACAG--T  1135

seq1  ATAAGTTTTCAGACTT-AGGGACTGTGGGTGTTTATCATG  1185
       |||| ||||| |||| ||| |||| ||| ||||||||||
seq2  TTAAG-TTTCAAACTTAAGGAACTG-GGGGGTTTATCATG  1173

seq1: chr8_19985317_19985472
seq2: B6Ng01-077B06.g_75_230 (reverse)

seq1  ACCCCACCCCACCCCCAACAATTCTACTACAGCCCAAGGCAAGAGTCACT  50
      |||||||||||||||||||||||||| | |||||||||||||||||||||
seq2  ACCCCACCCCACCCCCAACAATTCTATTGCAGCCCAAGGCAAGAGTCACT  50

seq1  CACTTCCTGGGACCCTGGCGCCAAAGCCTGGTAGGCCTTCAGGATTTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTGGGACCCTGGCGCCAAAGCCTGGTAGGCCTTCAGGATTTGCC  100

seq1  AATGTTGCTAGTCAACCCAGGCTTTCAGAGTCACCTTAGAGAGGGAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGCTAGTCAACCCAGGCTTTCAGAGTCACCTTAGAGAGGGAGAAA  150

seq1  TTTCTG  156
      ||||||
seq2  TTTCTG  156