BAC Information

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BAC

Clone NameB6Ng01-077P15
Chromosome8 (Build37)
Map Location 112,961,835 - 113,073,368
singlet/doubletdoublet
Overlap geneHydin, LOC672398
Upstream geneLOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546
Downstream geneVac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077P15.bB6Ng01-077P15.g
ACCDH893806DH893807
length1,111829
definitionDH893806|Mus musculus domesticus DNA, BAC clone: B6Ng01-077P15, 5' end.DH893807|Mus musculus domesticus DNA, BAC clone: B6Ng01-077P15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,961,835 - 112,962,953)(113,072,736 - 113,073,368)
sequence
gaattctgaactgtaaaccatcacaaatcctccatccttcccacagccac
cacacacacttgcacataagcatgcagttcctatatatgctagctatggg
ctgtggaaatggctgactcccaagccctaatttgctggagaaatacaaac
aaacaaacaaacaaacaaacaatcaaacaaaaaacagagacagccattag
tgtctagtttttataagattattttttatttgtgtatgtgtttggggtag
aggatgccttcagggaccagaaggtgtcaggcccatggatctagagttga
aggcgatttgtgagctgccagatgtgagggctaggatcggaactccatac
tccgtgagagcacaagcccatgcccttgcatagtatttgttcgtctagga
ctgtacttatcacacactagtcataagcactccgcttatactgaccactt
aaccacagagccagctccccagctccaactgaagtcttaatgggaaactc
tgtagagagagggcttgctctcagcatctttgaaagaaatgtatggaagc
tcatattcaccttctattgctaggtttcaaattctcataaacctactact
ggtttaaaacattagtaatttgttatctgttcttatgtgtgaagaatcca
ggcgtggcttcctgctcatggggtcaccgagggctgggataagtacgtta
gccgacctacatttcttgggggtggaggggccgctggctggggtggattc
tccctctgaccagtggtggaggaagggtcctcagaggaaggagccacagc
ttggatccctactttgctggcagacttttgcttgcagttgaatggctgac
agaactctccagtctcactcgtatcagcatgggctgctctcaatagttac
cgggccaccatagctaccctattacgcggccattccttaacgtcttctca
ggctcaacattctgtggtagaaggttccgtctcctttgggcctactgaag
aggatctccatctgaaggtgaactgtttttagacttaactgcatctgcaa
atccctttcctggaccacacatcagcatttgactgactaacagaagacgt
acctgtgcccc
gaattctctttatccacttgaatttgccttccttgtagccatataatctc
tcttcctcatcattttccagagccattcaaaatgaaactgcagatcattg
cccactgcttaacttttaaattacttggtacacactttctaagaatgaga
acacacagtacactagggttttcattgtcataaagactattatttggtct
gcagtccatgttcaacctcggcctctgttctgttgctacttgacctctct
ttatttttttccaggtcaaggaatcaacccacagtcatgtattgcatgta
actgtcatgcctctttgggaaaaggcttctacccttctttaggtttcttg
gctttgatgttttgaagagccagttgatctgttggctctttcttaagttg
gacggtctgatgctttttcatgcttaactattttggagggaaatgagttg
caagctgtgtccttttcactgtactgggtcaggagattcctttagtgtta
tgtgttctggttttggtgctgctacgatgtttgatgacttagttaaggtg
aggctcacctggtctctccatcacatatgtgcttttttttttttttttcc
tttttagttaatactttccggggaggtgctttgagtatataccctgttta
ttttattttatccatatagggccttatattttcccagactgttcccaaat
tcgctatttagttggggatgaccttggactccaggttcttctgtctctac
ctgtcaattaccaggactacaggctgtatcaccacacctggatcaatgcc
ctattcttttttttttttttttttaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_112961835_112962953
seq2: B6Ng01-077P15.b_48_1158

seq1  GAATTCTGAACTGTAAACCATCACAAATCCTCCATCCTTCCCACAGCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAACTGTAAACCATCACAAATCCTCCATCCTTCCCACAGCCAC  50

seq1  CACACACACTTGCACATAAGCATGCAGTTCCTATATATGCTAGCTATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACTTGCACATAAGCATGCAGTTCCTATATATGCTAGCTATGGG  100

seq1  CTGTGGAAATGGCTGACTCCCAAGCCCTAATTTGCTGGAGAAATACAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAAATGGCTGACTCCCAAGCCCTAATTTGCTGGAGAAATACAAAC  150

seq1  AAACAAACAAACAAACAAACAATCAAACAAAAAACAGAGACAGCCATTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAACAAACAATCAAACAAAAAACAGAGACAGCCATTAG  200

seq1  TGTCTAGTTTTTATAAGATTATTTTTTATTTGTGTATGTGTTTGGGGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGTTTTTATAAGATTATTTTTTATTTGTGTATGTGTTTGGGGTAG  250

seq1  AGGATGCCTTCAGGGACCAGAAGGTGTCAGGCCCATGGATCTAGAGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCCTTCAGGGACCAGAAGGTGTCAGGCCCATGGATCTAGAGTTGA  300

seq1  AGGCGATTTGTGAGCTGCCAGATGTGAGGGCTAGGATCGGAACTCCATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGATTTGTGAGCTGCCAGATGTGAGGGCTAGGATCGGAACTCCATAC  350

seq1  TCCGTGAGAGCACAAGCCCATGCCCTTGCATAGTATTTGTTCGTCTAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGAGAGCACAAGCCCATGCCCTTGCATAGTATTTGTTCGTCTAGGA  400

seq1  CTGTACTTATCACACACTAGTCATAAGCACTCCGCTTATACTGACCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTTATCACACACTAGTCATAAGCACTCCGCTTATACTGACCACTT  450

seq1  AACCACAGAGCCAGCTCCCCAGCTCCAACTGAAGTCTTAATGGGAAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAGAGCCAGCTCCCCAGCTCCAACTGAAGTCTTAATGGGAAACTC  500

seq1  TGTAGAGAGAGGGCTTGCTCTCAGCATCTTTGAAAGAAATGTATGGAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGAGAGGGCTTGCTCTCAGCATCTTTGAAAGAAATGTATGGAAGC  550

seq1  TCATATTCACCTTCTATTGCTAGGTTTCAAATTCTCATAAACCTACTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTCACCTTCTATTGCTAGGTTTCAAATTCTCATAAACCTACTACT  600

seq1  GGTTTAAAACATTAGTAATTTGTTATCTGTTCTTATGTGTGAAGAATCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAAAACATTAGTAATTTGTTATCTGTTCTTATGTGTGAAGAATCCA  650

seq1  GGCGTGGCTTCCTGCTCATGGGGTCACCGAGGGCTGGGATAAGTACGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGGCTTCCTGCTCATGGGGTCACCGAGGGCTGGGATAAGTACGTTA  700

seq1  GCCGACCTACATTTCTTGGGGGTGGAGGGGCCGCTGGCTGGGGTGGATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGACCTACATTTCTTGGGGGTGGAGGGGCCGCTGGCTGGGGTGGATTC  750

seq1  TCCCTCTGACCAGTGGTGGAGGAAGGGTCCTCAGAGGAAGGAGCCACAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTGACCAGTGGTGGAGGAAGGGTCCTCAGAGGAAGGAGCCACAGC  800

seq1  TTGGATCCCTACTTTGCTGGCAGACTTTTGCTTGCAGTTGAATGGCTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCCCTACTTTGCTGGCAGACTTTTGCTTGCAGTTGAATGGCTGAC  850

seq1  AGAACTCTCCAGTCTCACTCGTTATCAGCATGGGCTGCTCTCAATAGTTA  900
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGAACTCTCCAGTCTCACTCG-TATCAGCATGGGCTGCTCTCAATAGTTA  899

seq1  CCGGGCCACCATAGCTACCCTATTACGCGGCCATTCCTTAACGTC-TCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCGGGCCACCATAGCTACCCTATTACGCGGCCATTCCTTAACGTCTTCTC  949

seq1  AGGCTCAACATTTCTGTGGTAAGAAGGGTTCCGTCTCCTTTGGGCCTACT  999
      |||||||||| ||||||||| |||| ||||||||||||||||||||||||
seq2  AGGCTCAACA-TTCTGTGGT-AGAA-GGTTCCGTCTCCTTTGGGCCTACT  996

seq1  GAAGAAGATCTCCCATCTGAAGGTGAACTGTTTTAGGACTTTAACTGCAT  1049
      ||||| ||||| ||||||||||||||||||||||  ||| ||||||||||
seq2  GAAGAGGATCT-CCATCTGAAGGTGAACTGTTTTTAGAC-TTAACTGCAT  1044

seq1  CTGCAAAATCCCTTCCCGGGACCACCAACATCAGCATTTGACTGACTAAC  1099
      |||| ||||||||| || |||||||  |||||||||||||||||||||||
seq2  CTGC-AAATCCCTTTCCTGGACCAC--ACATCAGCATTTGACTGACTAAC  1091

seq1  AG-AGACGGTAACTGTGCCCC  1119
      || |||| ||| |||||||||
seq2  AGAAGAC-GTACCTGTGCCCC  1111

seq1: chr8_113072736_113073368
seq2: B6Ng01-077P15.g_69_701 (reverse)

seq1  CAAAGCACCTCCCCGGAAAGTATTAACTAAAAAGGAAAAAAAAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCACCTCCCCGGAAAGTATTAACTAAAAAGGAAAAAAAAAAAAAAA  50

seq1  AGCACATATGTGATGGAGAGACCAGGTGAGCCTCACCTTAACTAAGTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATATGTGATGGAGAGACCAGGTGAGCCTCACCTTAACTAAGTCAT  100

seq1  CAAACATCGTAGCAGCACCAAAACCAGAACACATAACACTAAAGGAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATCGTAGCAGCACCAAAACCAGAACACATAACACTAAAGGAATCT  150

seq1  CCTGACCCAGTACAGTGAAAAGGACACAGCTTGCAACTCATTTCCCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCCAGTACAGTGAAAAGGACACAGCTTGCAACTCATTTCCCTCCA  200

seq1  AAATAGTTAAGCATGAAAAAGCATCAGACCGTCCAACTTAAGAAAGAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTTAAGCATGAAAAAGCATCAGACCGTCCAACTTAAGAAAGAGCC  250

seq1  AACAGATCAACTGGCTCTTCAAAACATCAAAGCCAAGAAACCTAAAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATCAACTGGCTCTTCAAAACATCAAAGCCAAGAAACCTAAAGAAG  300

seq1  GGTAGAAGCCTTTTCCCAAAGAGGCATGACAGTTACATGCAATACATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAGCCTTTTCCCAAAGAGGCATGACAGTTACATGCAATACATGAC  350

seq1  TGTGGGTTGATTCCTTGACCTGGAAAAAAATAAAGAGAGGTCAAGTAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTTGATTCCTTGACCTGGAAAAAAATAAAGAGAGGTCAAGTAGCA  400

seq1  ACAGAACAGAGGCCGAGGTTGAACATGGACTGCAGACCAAATAATAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACAGAGGCCGAGGTTGAACATGGACTGCAGACCAAATAATAGTCT  450

seq1  TTATGACAATGAAAACCCTAGTGTACTGTGTGTTCTCATTCTTAGAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGACAATGAAAACCCTAGTGTACTGTGTGTTCTCATTCTTAGAAAGT  500

seq1  GTGTACCAAGTAATTTAAAAGTTAAGCAGTGGGCAATGATCTGCAGTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACCAAGTAATTTAAAAGTTAAGCAGTGGGCAATGATCTGCAGTTTC  550

seq1  ATTTTGAATGGCTCTGGAAAATGATGAGGAAGAGAGATTATATGGCTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAATGGCTCTGGAAAATGATGAGGAAGAGAGATTATATGGCTACA  600

seq1  AGGAAGGCAAATTCAAGTGGATAAAGAGAATTC  633
      |||||||||||||||||||||||||||||||||
seq2  AGGAAGGCAAATTCAAGTGGATAAAGAGAATTC  633