BAC Information

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BAC

Clone NameB6Ng01-078P08
Chromosome8 (Build37)
Map Location 30,733,894 - 30,859,597
singlet/doubletdoublet
Overlap genenone
Upstream geneUnc5d, LOC100041237
Downstream geneEG628189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078P08.bB6Ng01-078P08.g
ACCDH894513DH894514
length1,186942
definitionDH894513|Mus musculus domesticus DNA, BAC clone: B6Ng01-078P08, 5' end.DH894514|Mus musculus domesticus DNA, BAC clone: B6Ng01-078P08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,858,394 - 30,859,597)(30,733,894 - 30,734,591)
sequence
gaattcctaacaattctttcttattattcttgctcaggttgcaaaaggag
aaaggttttaagagcacaattataccgtatcatttttctctatggtctat
acacatacaaatagctcggtgatctgaagatatgataagattttctgcca
tccagcaaggcttctgatggcactaacccttcctgcctcattgtgcctct
cccattcctcaacatttgttcaagtgtgcttctctttcgtgataaattcc
tgagtaaaagtaaccctatgaggaaaggtttcatttggcctccatgttcc
aatcacagtctaaccttgaaggaattcagggcagaaaccagggaggacta
gaggcagaacctatggaagaaagctccttactagattgtttcctttgtct
tacattgacagctttctaatgcaactgaggcatacctacccaagggtggc
actctctacagtggtcagagaactctcacatgaataattaattgagaaat
tgtcccatagatatgcccactgcccagtctgaaggagtccttcttcaact
agcattctgtcttctgaggtgaatctggttggtgttgagttgacaaaaga
tacatgacatgccattgtgcccattcactgccaatgatcttagaatctct
tagatttcatgttctgctgggcacaaatcctatatctatgctgtttcttc
tgcctaaaatatctctacttgattatgttggtcatttctacctgactgaa
gaaaacattctttgtaccctttaccatacaaagtgcccctctttgggccg
ccacaggtatatgcacttgtttttcatagttcttcctaactcaacatcac
ttttacttacaagataacaagattaatatgtatttttccaaatattcata
aggcagtagtttcttcatctatttttctaggtgataacaaatttatttag
ttcctagtagtattcaatcaatttattttgaacatgtaaatgaataaatg
ggtaaaataaatccacccctatgaaaattatcattgaatgtcaattatct
tagaatttgctggctgttcctttgttgtttatcccccatggaaattgttt
atagcattcagtacctttcaattcattttgttgaccaaaaatagtccaaa
tattattctaccctgtgcatatttctaaagtaaaat
gaattcattcttaacttgggtacctctctgtctttgttgtcaaaattgaa
cagaataaacccatgatttccatatttactttgaaaggatccacaacacc
ccatgtcacaggggagaacaattattcctgtttaatgcttgagaaaaatg
ctgttaaaagcatagttcatgatgagaccatcattttacaattgataagg
agcttgggaggcggcctcagcctcagcagcagcggtcgccatcttggttc
cgggactcagcagaacttaggaaattagtctgaacaggttagagggtgcg
ccagagaaccggacagcttctgggacgggcagaagcacagagccgctgag
gcagcagcctgggcgggccgcagacaaccggccaccatccggaccagagg
acaggtgtccacctggctcgggagacggcctcagcctcaggagcagcggt
caccatcttggttccaggactccctggaacttaggattttagtctgcaca
ggtgagagtctgcaccacagaagctgacagcttctgggaactgccaaagc
aacacagcttctgagagaggccctgttttgggccttcttcttcgaccagg
aggaggtccaaaaacaagatatctgcgcaccttccctgtaagagagcttg
ccagcagagagtgctctgagcactgaaactcagaggagagaatctgtctc
ccaggtctgctgagagacggtaacagaatcaccagaagaacaatctctaa
acagagtcaactataactactaactccagagattaccagatggcgaaagg
taaacgtaggaattctactaacaggaaccaagaccactcaccatcatcag
aacccagcactcccacttcgcccagtccaggcaccccaacacacccgaaa
acctagacctagatttaaagcatatctcatgatgatggtaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_30858394_30859597
seq2: B6Ng01-078P08.b_43_1228 (reverse)

seq1  ATTTTACTTTTTAAAGAATATTGCACAAGGATTATGAATAATATATTGAA  50
      ||||||||||    ||||   |||||| ||  || ||||||||| ||| |
seq2  ATTTTACTTT----AGAAATATGCACAGGG--TA-GAATAATAT-TTGGA  42

seq1  CTATTTTTGGTCAACAAAATGAATTTTAAAGGTACTGAATGCTAT-AACA  99
      ||||||||||||||||||||||| || |||||||||||||||||| ||||
seq2  CTATTTTTGGTCAACAAAATGAA-TTGAAAGGTACTGAATGCTATAAACA  91

seq1  ATTTCCATGGTGGGAATAAAAACAAAAACAAAAGAAACAGCCAAGCAAAA  149
      |||||||||| ||    | ||||||     |||| ||||||| ||| |||
seq2  ATTTCCATGGGGG----ATAAACAA----CAAAGGAACAGCC-AGC-AAA  131

seq1  TTCTAAGATAATTGACATTTCAATGATAATTTTCATA-GGGTGGATTTAT  198
      ||||||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  TTCTAAGATAATTGACA-TTCAATGATAATTTTCATAGGGGTGGATTTAT  180

seq1  TTTACCCATTTATTCATTTACATGTTCAAAATAAATTGATTGAATACTAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCATTTATTCATTTACATGTTCAAAATAAATTGATTGAATACTAC  230

seq1  TAGGAACTAAATAAATTTGTTATCACCTAGAAAAATAGATGAAGAAACTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAACTAAATAAATTTGTTATCACCTAGAAAAATAGATGAAGAAACTA  280

seq1  CTGCCTTATGAATATTTGGAAAAATACATATTAATCTTGTTATCTTGTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTATGAATATTTGGAAAAATACATATTAATCTTGTTATCTTGTAA  330

seq1  GTAAAAGTGATGTTGAGTTAGGAAGAACTATGAAAAACAAGTGCATATAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGTGATGTTGAGTTAGGAAGAACTATGAAAAACAAGTGCATATAC  380

seq1  CTGTGGCGGCCCAAAGAGGGGCACTTTGTATGGTAAAGGGTACAAAGAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCGGCCCAAAGAGGGGCACTTTGTATGGTAAAGGGTACAAAGAAT  430

seq1  GTTTTCTTCAGTCAGGTAGAAATGACCAACATAATCAAGTAGAGATATTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTCAGTCAGGTAGAAATGACCAACATAATCAAGTAGAGATATTT  480

seq1  TAGGCAGAAGAAACAGCATAGATATAGGATTTGTGCCCAGCAGAACATGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGAAGAAACAGCATAGATATAGGATTTGTGCCCAGCAGAACATGA  530

seq1  AATCTAAGAGATTCTAAGATCATTGGCAGTGAATGGGCACAATGGCATGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAGAGATTCTAAGATCATTGGCAGTGAATGGGCACAATGGCATGT  580

seq1  CATGTATCTTTTGTCAACTCAACACCAACCAGATTCACCTCAGAAGACAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATCTTTTGTCAACTCAACACCAACCAGATTCACCTCAGAAGACAG  630

seq1  AATGCTAGTTGAAGAAGGACTCCTTCAGACTGGGCAGTGGGCATATCTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAGTTGAAGAAGGACTCCTTCAGACTGGGCAGTGGGCATATCTAT  680

seq1  GGGACAATTTCTCAATTAATTATTCATGTGAGAGTTCTCTGACCACTGTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAATTTCTCAATTAATTATTCATGTGAGAGTTCTCTGACCACTGTA  730

seq1  GAGAGTGCCACCCTTGGGTAGGTATGCCTCAGTTGCATTAGAAAGCTGTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGCCACCCTTGGGTAGGTATGCCTCAGTTGCATTAGAAAGCTGTC  780

seq1  AATGTAAGACAAAGGAAACAATCTAGTAAGGAGCTTTCTTCCATAGGTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAGACAAAGGAAACAATCTAGTAAGGAGCTTTCTTCCATAGGTTC  830

seq1  TGCCTCTAGTCCTCCCTGGTTTCTGCCCTGAATTCCTTCAAGGTTAGACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTAGTCCTCCCTGGTTTCTGCCCTGAATTCCTTCAAGGTTAGACT  880

seq1  GTGATTGGAACATGGAGGCCAAATGAAACCTTTCCTCATAGGGTTACTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTGGAACATGGAGGCCAAATGAAACCTTTCCTCATAGGGTTACTTT  930

seq1  TACTCAGGAATTTATCACGAAAGAGAAGCACACTTGAACAAATGTTGAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGGAATTTATCACGAAAGAGAAGCACACTTGAACAAATGTTGAGG  980

seq1  AATGGGAGAGGCACAATGAGGCAGGAAGGGTTAGTGCCATCAGAAGCCTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAGAGGCACAATGAGGCAGGAAGGGTTAGTGCCATCAGAAGCCTT  1030

seq1  GCTGGATGGCAGAAAATCTTATCATATCTTCAGATCACCGAGCTATTTGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATGGCAGAAAATCTTATCATATCTTCAGATCACCGAGCTATTTGT  1080

seq1  ATGTGTATAGACCATAGAGAAAAATGATACGGTATAATTGTGCTCTTAAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATAGACCATAGAGAAAAATGATACGGTATAATTGTGCTCTTAAA  1130

seq1  ACCTTTCTCCTTTTGCAACCTGAGCAAGAATAATAAGAAAGAATTGTTAG  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCTCCTTTTGCAACCTGAGCAAGAATAATAAGAAAGAATTGTTAG  1180

seq1  GAATTC  1204
      ||||||
seq2  GAATTC  1186

seq1: chr8_30733894_30734591
seq2: B6Ng01-078P08.g_68_765

seq1  GAATTCATTCTTAACTTGGGTACCTCTCTGTCTTTGTTGTCAAAATTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTTAACTTGGGTACCTCTCTGTCTTTGTTGTCAAAATTGAA  50

seq1  CAGAATAAACCCATGATTTCCATATTTACTTTGAAAGGATCCACAACACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAAACCCATGATTTCCATATTTACTTTGAAAGGATCCACAACACC  100

seq1  CCATGTCACAGGGGAGAACAATTATTCCTGTTTAATGCTTGAGAAAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCACAGGGGAGAACAATTATTCCTGTTTAATGCTTGAGAAAAATG  150

seq1  CTGTTAAAAGCATAGTTCATGATGAGACCATCATTTTACAATTGATAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAAAAGCATAGTTCATGATGAGACCATCATTTTACAATTGATAAGG  200

seq1  AGCTTGGGAGGCGGCCTCAGCCTCAGCAGCAGCGGTCGCCATCTTGGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGGAGGCGGCCTCAGCCTCAGCAGCAGCGGTCGCCATCTTGGTTC  250

seq1  CGGGACTCAGCAGAACTTAGGAAATTAGTCTGAACAGGTTAGAGGGTGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGACTCAGCAGAACTTAGGAAATTAGTCTGAACAGGTTAGAGGGTGCG  300

seq1  CCAGAGAACCGGACAGCTTCTGGGACGGGCAGAAGCACAGAGCCGCTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAACCGGACAGCTTCTGGGACGGGCAGAAGCACAGAGCCGCTGAG  350

seq1  GCAGCAGCCTGGGCGGGCCGCAGACAACCGGCCACCATCCGGACCAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGCCTGGGCGGGCCGCAGACAACCGGCCACCATCCGGACCAGAGG  400

seq1  ACAGGTGTCCACCTGGCTCGGGAGACGGCCTCAGCCTCAGGAGCAGCGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGTCCACCTGGCTCGGGAGACGGCCTCAGCCTCAGGAGCAGCGGT  450

seq1  CACCATCTTGGTTCCAGGACTCCCTGGAACTTAGGATTTTAGTCTGCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCTTGGTTCCAGGACTCCCTGGAACTTAGGATTTTAGTCTGCACA  500

seq1  GGTGAGAGTCTGCACCACAGAAGCTGACAGCTTCTGGGAACTGCCAAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGAGTCTGCACCACAGAAGCTGACAGCTTCTGGGAACTGCCAAAGC  550

seq1  AACACAGCTTCTGAGAGAGGCCCTGTTTTGGGCCTTCTTCTTCGACCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGCTTCTGAGAGAGGCCCTGTTTTGGGCCTTCTTCTTCGACCAGG  600

seq1  AGGAGGTCCAAAAACAAGATATCTGCGCACCTTCCCTGTAAGAGAGCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTCCAAAAACAAGATATCTGCGCACCTTCCCTGTAAGAGAGCTTG  650

seq1  CCAGCAGAGAGTGCTCTGAGCACTGAAACTCAGAGGAGAGAATCTGTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGAGAGTGCTCTGAGCACTGAAACTCAGAGGAGAGAATCTGTC  698