BAC Information

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BAC

Clone NameB6Ng01-079G23
Chromosome8 (Build37)
Map Location 50,341,679 - 50,342,858
singlet/doubletsinglet
Overlap genenone
Upstream geneOdz3, 2900073C17Rik, LOC100039866
Downstream gene4930555F03Rik, LOC100039919, EG667495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079G23.bB6Ng01-079G23.g
ACCDH894845DH894846
length1,2261,170
definitionDH894845|Mus musculus domesticus DNA, BAC clone: B6Ng01-079G23, 5' end.DH894846|Mus musculus domesticus DNA, BAC clone: B6Ng01-079G23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaggtctctatgcttgcatggcaagctcttagccaatgagccatc
tcccccgtcccctactgttagattcatgacagctccaattactcagcttc
tgctctgataccattaccaagaagtttcagaaaaccccaagcctctctct
ctcagatgagtattggcatcatacttcttacattcaaaaataggcatcca
ttgaatatttaagtggtatggagctgctttttgctttatggatgagacag
taatgagaactagcttgaagtctcgctaaaagaaaaatggaaatatagtg
actcacgtgaatgcaaaaggactgtctgaagccgaagggatccgaggaaa
tctatccctctctcagttcatgacttagcatcgatggtaagagacatagt
tctgaatgaactggggtccatttctgatagttatgttggccccatatttt
tcctaatctttcctccaatggtggaaattaagtatcttataacctttttt
aatcaaaaatgtacctgatggatgtaaaacatagtaaattattgcacacc
caccatccccaacttctgtcaaagactgtgagaatagaacaaataataaa
gaaattagtggtgattaagaagagactagtatcactgagatgaaatcttc
ttggatatgttttctgagagcgcaaagaagctatgtttcagagataacca
aagttgtacctcatgttgcagctggacttgttaatgtgtaatagtcaccc
aggtggtactggttttgaagggtcatggagagcagctggggctttgcact
gtgaaaggccagagaaaggtcattggtgaaagtacaggctcagttgcagt
tgacagcccagggctaaagggggtcatgcaaagaaactgaggcttggcac
caggaaggagcccatgagcagacattggtgagcctagatgaaacagagac
accagcatattgggatgaccaccaagaacagcagtatcggtggaatgaag
tcatcagaacctagagtgctatggaggggcagagctagataatgactcaa
gtctttagagggagcccagaaaatcatgtgtggatcccagacatggctgg
ataccacaagagttaagatgcgagccatggaacctgccagcagctctcca
ggggtgaacgatcaggagacttgatgcactctcagctaaggattgaatta
gaagagcctttacctctccaacactg
gaattctcagtctgctttccaaacagcctatgacttcaaagagatccaaa
caaaccaatagaagactgcaatatggaaataaattcaggatgtagactgg
aaaatcagtagcataactgagaaagacaaacgtagctaagaacttagtaa
tgaaactaacatcttgaaaagaacaaacagaaacattggaaatgaaataa
taaatctcataagaaatctaagttgaaagcatcaacaatagactagatca
aatagaagaaggtgtattagaaatagaaaacaatgtattaggaaatataa
catctagtcataggcaaacaaatataatacaaattataatgactacatct
cagcatctgaggtatggcacagagttcagattgaagaacacattttgtct
aagaaggaaatgagattaaaactaatgaaattgtcacagaaagtatctca
aatgtagggaaaaatagatacccatacaagctatatctagagaagtagct
cccaacagcacagtatagtcaagttgtcaaaactggaaacagagaatatt
aagagcttcaaaaaagtaccaatgtacattttgcaacacgatcaggacat
taacaggtgtctcagaagaatcactagaagtaaagaaagtgtgatgattg
atcctgaagttcaccttgattgtttctggagtcaactaagagacacacct
ctgtgcataagaacagacaccgttagtttgtgttagtgtgtgctactaaa
agaaatactccctttaaaagtaaaaaacaattgtaagtaaatgtgtgcca
aatattatggcactcaattttataaagtagatacatgtagatagaagtgt
ggcttcaatactccagtcatatcaatagataaatcatcagataaatattc
aagaagaatctataaagttaacatgagcatagagaaatataattgacaaa
aatctatagaactttctatccaaccactgaagaatgaccactgttctcag
tactcatgcactttccttaaagaatgacatttacactataaaataaaagt
cgccgatgaagatcttacagaattaacaattaaaatagtagcatgccaag
ctacagaaactatttgatacagaacgcttgaacatatatctgctaatgat
gagtagttcactgggaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_50341679_50342858
seq2: B6Ng01-079G23.g_69_1238

seq1  GAATTCTCAGTCTGCTTTCCAAACAGCCTATGACTTCAAAGAGATCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTCTGCTTTCCAAACAGCCTATGACTTCAAAGAGATCCAAA  50

seq1  CAAACCAATAGAAGACTGCAATATGGAAATAAATTCAGGATGTAGACTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAATAGAAGACTGCAATATGGAAATAAATTCAGGATGTAGACTGG  100

seq1  AAAATCAGTAGCATAACTGAGAAAGACAAACGTAGCTAAGAACTTAGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGTAGCATAACTGAGAAAGACAAACGTAGCTAAGAACTTAGTAA  150

seq1  TGAAACTAACATCTTGAAAAGAACAAACAGAAACATTGGAAATGAAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTAACATCTTGAAAAGAACAAACAGAAACATTGGAAATGAAATAA  200

seq1  TAAATCTCATAAGAAATCTAAGTTGAAAGCATCAACAATAGACTAGATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTCATAAGAAATCTAAGTTGAAAGCATCAACAATAGACTAGATCA  250

seq1  AATAGAAGAAGGTGTATTAGAAATAGAAAACAATGTATTAGGAAATATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAGAAGGTGTATTAGAAATAGAAAACAATGTATTAGGAAATATAA  300

seq1  CATCTAGTCATAGGCAAACAAATATAATACAAATTATAATGACTACATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGTCATAGGCAAACAAATATAATACAAATTATAATGACTACATCT  350

seq1  CAGCATCTGAGGTATGGCACAGAGTTCAGATTGAAGAACACATTTTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCTGAGGTATGGCACAGAGTTCAGATTGAAGAACACATTTTGTCT  400

seq1  AAGAAGGAAATGAGATTAAAACTAATGAAATTGTCACAGAAAGTATCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGAAATGAGATTAAAACTAATGAAATTGTCACAGAAAGTATCTCA  450

seq1  AATGTAGGGAAAAATAGATACCCATACAAGCTATATCTAGAGAAGTAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGGGAAAAATAGATACCCATACAAGCTATATCTAGAGAAGTAGCT  500

seq1  CCCAACAGCACAGTATAGTCAAGTTGTCAAAACTGGAAACAGAGAATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAGCACAGTATAGTCAAGTTGTCAAAACTGGAAACAGAGAATATT  550

seq1  AAGAGCTTCAAAAAAGTACCAATGTACATTTTGCAACACGATCAGGACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTTCAAAAAAGTACCAATGTACATTTTGCAACACGATCAGGACAT  600

seq1  TAACAGGTGTCTCAGAAGAATCACTAGAAGTAAAGAAAGTGTGATGATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGTGTCTCAGAAGAATCACTAGAAGTAAAGAAAGTGTGATGATTG  650

seq1  ATCCTGAAGTTCACCTTGATTGTTTCTGGAGTCAACTAAGAGACACACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAAGTTCACCTTGATTGTTTCTGGAGTCAACTAAGAGACACACCT  700

seq1  CTGTGCATAAGAACAGACACCGTTAGTTTGTGTTAGTGTGTGCTACTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCATAAGAACAGACACCGTTAGTTTGTGTTAGTGTGTGCTACTAAA  750

seq1  AGAAATACTCCCTTTAAAAGTAAAAAACAATTGTAAGTAAATGTGTGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATACTCCCTTTAAAAGTAAAAAACAATTGTAAGTAAATGTGTGCCA  800

seq1  AATATTATGGCACTCAATTTTATAAAGTAGATACATGTAGATAGAAGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATGGCACTCAATTTTATAAAGTAGATACATGTAGATAGAAGTGT  850

seq1  GGCTTCAATACTCCAGTCATATCAATAGATAAATCATCAGATAAAATATT  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGCTTCAATACTCCAGTCATATCAATAGATAAATCATCAGAT-AAATATT  899

seq1  CAAGAAAGAATCTATAAAGTTAACATGAGCAATAGAGAAAATATAATTGA  950
      |||| ||||||||||||||||||||||||| |||||| ||||||||||||
seq2  CAAG-AAGAATCTATAAAGTTAACATGAGC-ATAGAG-AAATATAATTGA  946

seq1  CAAAAATCTATAGAACTTTCTATCCAACCACTGAAGAATGACCACTGTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATCTATAGAACTTTCTATCCAACCACTGAAGAATGACCACTGTTC  996

seq1  TCAGTACCCATGCAACTTTCCTTAAAAGAAATGACATTTTACACTATAAA  1050
      ||||||| ||||| ||||||||||||   ||||||| |||||||||||||
seq2  TCAGTACTCATGC-ACTTTCCTTAAA--GAATGACA-TTTACACTATAAA  1042

seq1  ATTAAAAAGTCGCCGATGAAGATCTTACAGGAATTAAACAATAAAATAGT  1100
      ||  ||||||||||||||||||||||||| |||||||  | |||||||||
seq2  AT--AAAAGTCGCCGATGAAGATCTTACA-GAATTAACAATTAAAATAGT  1089

seq1  AGCATGCAAAGCTACAGAAACTATAGTGATACAGACAGCTTGAACA-ATA  1149
      ||||||| ||||||||||||||||  |||||||||  ||||||||| |||
seq2  AGCATGCCAAGCTACAGAAACTAT-TTGATACAGAACGCTTGAACATATA  1138

seq1  -CTGCTAAATGATGAGTTAGTCACT-GGAAAAC  1180
       ||||| ||||||||||   ||||| |||||||
seq2  TCTGCT-AATGATGAGTAGTTCACTGGGAAAAC  1170