BAC Information

Click to search

BAC

Clone NameB6Ng01-079N02
Chromosome8 (Build37)
Map Location 69,426,478 - 69,549,140
singlet/doubletdoublet
Overlap genenone
Upstream geneMarch1, 1810029B16Rik, Tktl2, Npy5r, Npy1r, BC053440
Downstream geneLOC665453, Nat1, Nat2, LOC100041265, Nat3, Psd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079N02.bB6Ng01-079N02.g
ACCDH895119DH895120
length1,2021,143
definitionDH895119|Mus musculus domesticus DNA, BAC clone: B6Ng01-079N02, 5' end.DH895120|Mus musculus domesticus DNA, BAC clone: B6Ng01-079N02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,426,478 - 69,427,709)(69,547,976 - 69,549,140)
sequence
gaattctttcccaccagctttgccactgagaatcctcgcggccacatagc
ttcacatataaatggtaagcatttcacaaacaaatattcaatttcaggta
aaatcgatgagaacatctcagaagaaaatatcatttatgagaccaatgaa
actgatactaaaatctgatggtataaaaaaggaaaattataggcttgttt
ctcttaggaatgtagacttgaacattccatcaagtatagtgaattaataa
gaacccagcttatttttcaagagatgaaacaccattacctagggctcaca
ttgtaggtccaggctgcttcaacatgtcaatctttgtagtaagtctccct
tctcttcccaaacatcatcctgtttcctgtattggaaaatggcctcttgt
attttattttctaagtcttacttttgaccctctttgccagctactgtccc
catctgcttcagccctctgagttcagccttcagtcgctgctaccactttc
tctatggtttactctaacgaggcctttgcttccaaagagaagcaacttta
tcaagtccacgaaagacatttacaaaggctggcgatctgaactcatttaa
caagtctataggagtgatgggagtgtttaagtgtctcaaagttttacact
ctcttccagagttatcatgatgctgtgtccagctggcttttccctgggtc
ccaggacccaggtcatcaggtttgcacagtgagggccttactcactgagg
cgtctccccagtccccatttctgtcttctctgtatgtatctctcttccat
acatctctcaaatccagatgtctttatttagctttgtaacagagacctta
ccatgcccaaaatagaactggagacttccatttcaagtttgctttagtag
acgtttctgctcttatggttgggaactctatcttttcagtgcttgagcct
cagcaccaggttcaaacaaggcaaatgaaaataaataaatagacttcttt
ttctttaaattatatgtcagattagaagtgaatagcagtggctaagtaga
aactgatctgttttcagcatctagatgaaccgatttcatgaaatgttcca
ccccccaaagcagccactccaatctgtgttgctaaatattggtatagtaa
ccagctgagacagcattctgttgaataattgagcctcatagacagcctgc
ag
gaattcttaatttttttttatttcttggatacattttggtgttctgtctt
gaaatgaatgttcggtggatgaatgacaaaggtcaaagtaaacattttaa
cacatggtccattttaattgttttgatttatacaattaagtaaattaatt
cttaatgtggagaaagtgattatttgactataatgaacttcatatcctca
agtgttaaatttatgagagactaaagctgtatctacaaaatggtgaataa
agccaattaggttgtcatttattatcaaatagtgactcattgacacatcg
cattagacacaatcaatttaactagctactgctaaaatctaataaatctc
taattggtcaatttagtaaaacaaaattgaaattcatatcagcttctctt
ttaaagctttatttaatttttgcctattatgataatggtattcttgacag
cacagtagttttgctgtttctcgtagcaacagtatgcatcagttctgttc
tgatcatggctgaattcaccaagcctttgccttatcatacagtcaaaatg
ggttttgaactcagacaaatggcatgcatttagctaatattgcttgcaaa
gttgtaaggcaaaacttcataaaggatacacaaaaccaaatgaaaatgcc
caaggtaggacactcgtcatgcaaagcttcatgaacatgttgactaagtc
tacatcatcagacagaacatattagcaactaatatctacctgtagcttac
aaacagattaaacaaaacctagaatccacacatgtggtgaaccatgtgtg
gctcctatgcttctgtggcatcgatggtcacatcacctgccttgttcttc
ttggtttgattctgcaattcttgggtctttcagaatacactagacattac
cactttctcccagtttcatataaagatttgccaccttaatcagcctataa
tctatatcttacatttagatagtagaatagctgtgggaaagatagcttaa
taatacaactactctgaagatagtatctgactaatgtgttttcagtgatg
gcatacagctcttcagtttgatgggcgctcatcaactagggagcagatca
gtatcacagcctctccttgttctctaagttatcctaggagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_69426478_69427709
seq2: B6Ng01-079N02.b_47_1248

seq1  GAATTCTTTCCCACCAGCTTTGCCACTGAGAATCCTCGCGGCCACATAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCACCAGCTTTGCCACTGAGAATCCTCGCGGCCACATAGC  50

seq1  TTCACATATAAATGGTAAGCATTTCACAAACAAATATTCAATTTCAGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATATAAATGGTAAGCATTTCACAAACAAATATTCAATTTCAGGTA  100

seq1  AAATCGATGAGAACATCTCAGAAGAAAATATCATTTATGAGACCAATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGATGAGAACATCTCAGAAGAAAATATCATTTATGAGACCAATGAA  150

seq1  ACTGATACTAAAATCTGATGGTATAAAAAAGGAAAATTATAGGCTTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATACTAAAATCTGATGGTATAAAAAAGGAAAATTATAGGCTTGTTT  200

seq1  CTCTTAGGAATGTAGACTTGAACATTCCATCAAGTATAGTGAATTAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGGAATGTAGACTTGAACATTCCATCAAGTATAGTGAATTAATAA  250

seq1  GAACCCAGCTTATTTTTCAAGAGATGAAACACCATTACCTAGGGCTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCAGCTTATTTTTCAAGAGATGAAACACCATTACCTAGGGCTCACA  300

seq1  TTGTAGGTCCAGGCTGCTTCAACATGTCAATCTTTGTAGTAAGTCTCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGTCCAGGCTGCTTCAACATGTCAATCTTTGTAGTAAGTCTCCCT  350

seq1  TCTCTTCCCAAACATCATCCTGTTTCCTGTATTGGAAAATGGCCTCTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCCAAACATCATCCTGTTTCCTGTATTGGAAAATGGCCTCTTGT  400

seq1  ATTTTATTTTCTAAGTCTTACTTTTGACCCTCTTTGCCAGCTACTGTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTCTAAGTCTTACTTTTGACCCTCTTTGCCAGCTACTGTCCC  450

seq1  CATCTGCTTCAGCCCTCTGAGTTCAGCCTTCAGTCGCTGCTACCACTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCTTCAGCCCTCTGAGTTCAGCCTTCAGTCGCTGCTACCACTTTC  500

seq1  TCTATGGTTTACTCTAACGAGGCCTTTGCTTCCAAAGAGAAGCAACTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGTTTACTCTAACGAGGCCTTTGCTTCCAAAGAGAAGCAACTTTA  550

seq1  TCAAGTCCACGAAAGACATTTACAAAGGCTGGCGATCTGAACTCATTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCCACGAAAGACATTTACAAAGGCTGGCGATCTGAACTCATTTAA  600

seq1  CAAGTCTATAGGAGTGATGGGAGTGTTTAAGTGTCTCAAAGTTTTACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTATAGGAGTGATGGGAGTGTTTAAGTGTCTCAAAGTTTTACACT  650

seq1  CTCTTCCAGAGTTATCATGATGCTGTGTCCAGCTGGCTTTTCCCTGGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCAGAGTTATCATGATGCTGTGTCCAGCTGGCTTTTCCCTGGGTC  700

seq1  CCAGGACCCAGGTCATCAGGTTTGCACAGTGAGGGCCTTACTCACTGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACCCAGGTCATCAGGTTTGCACAGTGAGGGCCTTACTCACTGAGG  750

seq1  CGTCTCCCCAGTCCCCATTTCTGTCTTCTCTGTATGTATCTCTCTTCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTCCCCAGTCCCCATTTCTGTCTTCTCTGTATGTATCTCTCTTCCAT  800

seq1  ACATCTCTCAAATCCAGATGTCTTTATTTAGCTTTGTAACAGAGACCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCTCAAATCCAGATGTCTTTATTTAGCTTTGTAACAGAGACCTTA  850

seq1  CCATGCCCAAAATAGAACTGGAGACTTCCATTTCAAGTTTGCTTTAGTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCCAAAATAGAACTGGAGACTTCCATTTCAAGTTTGCTTTAGTAG  900

seq1  ACGTTTCTGCTCTTATGGTTGGGAACTCTATCTTTTCAGTTGCTTGAGCC  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACGTTTCTGCTCTTATGGTTGGGAACTCTATCTTTTCAG-TGCTTGAGCC  949

seq1  TCAGGCACCAGGTTCAAAACAAGGCAAAATGAAAATAAATAAATAAGACT  1000
      ||| ||||||||||| ||||||||| |||||||||||||||||| |||||
seq2  TCA-GCACCAGGTTC-AAACAAGGC-AAATGAAAATAAATAAAT-AGACT  995

seq1  TCTTTTTTCTTTTAAATTATATGTTCAGATTAGAAGTGAATAGCAGTGGC  1050
      |||||||   ||||||||||||| ||||||||||||||||||||||||||
seq2  TCTTTTT--CTTTAAATTATATG-TCAGATTAGAAGTGAATAGCAGTGGC  1042

seq1  TAAAGTAGAAAACTGATCTGTTTTCCAGCATCTTAGGAATGAACCGATTT  1100
      | |||||| ||||||||||||||| ||||||| |||  ||||||||||||
seq2  T-AAGTAG-AAACTGATCTGTTTT-CAGCATC-TAG--ATGAACCGATTT  1086

seq1  CATTGAAATGTTCCCACCCACCAAAGCAAGCCACTCACAATCTGTGTTGC  1150
      || ||||||||| |||||| ||||||| |||||||| |||||||||||||
seq2  CA-TGAAATGTT-CCACCCCCCAAAGC-AGCCACTC-CAATCTGTGTTGC  1132

seq1  CTAATATTGGGTATTAAGTTAACACAGCCCAGAAGCAGGCATTCTGTTGA  1200
        |||||| |||||  || |||| ||||  |||  || ||||||||||||
seq2  TAAATATT-GGTAT--AG-TAAC-CAGCTGAGA--CA-GCATTCTGTTGA  1174

seq1  ATGAGTTAGGCCTTCATTAGACAGGCCTGCAG  1232
      || | | ||  | ||| |||||| ||||||||
seq2  ATAATTGAG--CCTCA-TAGACA-GCCTGCAG  1202

seq1: chr8_69547976_69549140
seq2: B6Ng01-079N02.g_68_1210 (reverse)

seq1  ATGCTCTCTAGGAATTAACTGTAGAGGAAACAAGGAGAGCTGGTGATTAC  50
      |||||| ||||||  ||||| |||||  |||||||||||   |||| |||
seq2  ATGCTC-CTAGGA--TAACT-TAGAG--AACAAGGAGAGGCTGTGA-TAC  43

seq1  TGGATCTGCTTTCCTAGTTGATAGAGCG-CCATCAAACCTTGGAGAGGCT  99
      | ||||||| | |||||||||| ||||| |||||||||  || ||||   
seq2  T-GATCTGC-TCCCTAGTTGAT-GAGCGCCCATCAAAC--TGAAGAG--C  86

seq1  TGTATGCCATCACTGAAAACACATTAGTCAGATACTAATTCTTCAGAGTT  149
      |||||||||||||||||||||||||||||||||||||  ||||||||| |
seq2  TGTATGCCATCACTGAAAACACATTAGTCAGATACTA--TCTTCAGAG-T  133

seq1  AGTTGTATTATTTAAGCTTATCCTTTTCCAACAGCTATTCTTACTATCTA  199
      |||||||||| |||||| ||||  ||||| |||||||||| |||||||||
seq2  AGTTGTATTA-TTAAGC-TATC--TTTCCCACAGCTATTC-TACTATCTA  178

seq1  AATGTAGGATATAGATTATAGGCTGATTAAGGTGGCAAATCTTTATATGG  249
      |||||| |||||||||||||||||||||||||||||||||||||||||| 
seq2  AATGTAAGATATAGATTATAGGCTGATTAAGGTGGCAAATCTTTATATGA  228

seq1  AACTGTGAGAAAGTGGTAATGTCTAGTTGTATTCTGAAAGACCCAAGAAT  299
      ||||| |||||||||||||||||||| |||||||||||||||||||||||
seq2  AACTGGGAGAAAGTGGTAATGTCTAG-TGTATTCTGAAAGACCCAAGAAT  277

seq1  TGCAGAATCAAACCAAGAAGAACAAGGCAGGTGATGTGACCATCGATGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAATCAAACCAAGAAGAACAAGGCAGGTGATGTGACCATCGATGCC  327

seq1  ACAGAAGCATAGGAGCCACACATGGTTCACCACATGTGTGGATTCTAGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGCATAGGAGCCACACATGGTTCACCACATGTGTGGATTCTAGGT  377

seq1  TTTGTTTAATCTGTTTGTAAGCTACAGGTAGATATTAGTTGCTAATATGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTAATCTGTTTGTAAGCTACAGGTAGATATTAGTTGCTAATATGT  427

seq1  TCTGTCTGATGATGTAGACTTAGTCAACATGTTCATGAAGCTTTGCATGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGATGATGTAGACTTAGTCAACATGTTCATGAAGCTTTGCATGA  477

seq1  CGAGTGTCCTACCTTGGGCATTTTCATTTGGTTTTGTGTATCCTTTATGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGTCCTACCTTGGGCATTTTCATTTGGTTTTGTGTATCCTTTATGA  527

seq1  AGTTTTGCCTTACAACTTTGCAAGCAATATTAGCTAAATGCATGCCATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGCCTTACAACTTTGCAAGCAATATTAGCTAAATGCATGCCATTT  577

seq1  GTCTGAGTTCAAAACCCATTTTGACTGTATGATAAGGCAAAGGCTTGGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGTTCAAAACCCATTTTGACTGTATGATAAGGCAAAGGCTTGGTG  627

seq1  AATTCAGCCATGATCAGAACAGAACTGATGCATACTGTTGCTACGAGAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGCCATGATCAGAACAGAACTGATGCATACTGTTGCTACGAGAAA  677

seq1  CAGCAAAACTACTGTGCTGTCAAGAATACCATTATCATAATAGGCAAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAACTACTGTGCTGTCAAGAATACCATTATCATAATAGGCAAAAA  727

seq1  TTAAATAAAGCTTTAAAAGAGAAGCTGATATGAATTTCAATTTTGTTTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAAGCTTTAAAAGAGAAGCTGATATGAATTTCAATTTTGTTTTA  777

seq1  CTAAATTGACCAATTAGAGATTTATTAGATTTTAGCAGTAGCTAGTTAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTGACCAATTAGAGATTTATTAGATTTTAGCAGTAGCTAGTTAAA  827

seq1  TTGATTGTGTCTAATGCGATGTGTCAATGAGTCACTATTTGATAATAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGTGTCTAATGCGATGTGTCAATGAGTCACTATTTGATAATAAAT  877

seq1  GACAACCTAATTGGCTTTATTCACCATTTTGTAGATACAGCTTTAGTCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCTAATTGGCTTTATTCACCATTTTGTAGATACAGCTTTAGTCTC  927

seq1  TCATAAATTTAACACTTGAGGATATGAAGTTCATTATAGTCAAATAATCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAATTTAACACTTGAGGATATGAAGTTCATTATAGTCAAATAATCA  977

seq1  CTTTCTCCACATTAAGAATTAATTTACTTAATTGTATAAATCAAAACAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCACATTAAGAATTAATTTACTTAATTGTATAAATCAAAACAAT  1027

seq1  TAAAATGGACCATGTGTTAAAATGTTTACTTTGACCTTTGTCATTCATCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGGACCATGTGTTAAAATGTTTACTTTGACCTTTGTCATTCATCC  1077

seq1  ACCGAACATTCATTTCAAGACAGAACACCAAAATGTATCCAAGAAATAAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAACATTCATTTCAAGACAGAACACCAAAATGTATCCAAGAAATAAA  1127

seq1  AAAAAATTAAGAATTC  1165
      ||||||||||||||||
seq2  AAAAAATTAAGAATTC  1143