BAC Information

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BAC

Clone NameB6Ng01-080A10
Chromosome8 (Build37)8 (Build37)
Map Location 19,975,252 - 19,976,18319,976,178 - 19,977,115
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDefb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567, LOC547150, LOC100040599
Downstream geneEG665822, 6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080A10.bB6Ng01-080A10.g
ACCDH895276DH895277
length936936
definitionDH895276|Mus musculus domesticus DNA, BAC clone: B6Ng01-080A10, 5' end.DH895277|Mus musculus domesticus DNA, BAC clone: B6Ng01-080A10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(19,975,252 - 19,976,183)(19,976,178 - 19,977,115)
sequence
gaattccacatcaaggcgggctttccagctgtttgctcgtggctgaaagt
ctgctgtttgcagagcaagtacctgggtaatttggatactgttgtggcca
cctcagatgttgatataaaacaaggagagacagagagaggcacattctat
ttaaataatcaaaccaaatccaagtgctcgtacgccacagctgcttgggg
gaaaacagttccagcttcttgccttcttccaactgggggccttctggctt
ccccaaacctgtgtgtgtcttctggctttcacttagaagagaagacactg
gtctttgccttctggctgatcagcccaatcaagcaaggcaccttgtccaa
aggtgaggttgtggcttcatcatccaaatgatactttgtgtttcagagtg
cctgcaaatgtactgtcattgtcagagaaaaaatttaaactctttggtct
gggactcagggacagaatccataatttcatgacttcctctcaagactgtt
ctcatgttgtacaagttcctgcccaaacaaatcacctacatttttttctg
gaatctcctgctcatttgtgtctgtcaatgcagcagtggttctacctctc
taccctttgttgctgttgttgttacatttattctctcctacacacaatgc
tacagatacttttgtagaagctgagcactggaaagtttcattggaagctt
cacatcctgcccctgtggctaggagctgttcttgacatctgctctaaagt
cttgcctctccgcctccccaagctgttcttgctctaggactgcactgaac
tgtaggagcataggtcatctgggagagttcatattaaactggaaacttca
ggggaccagcaggatggctcagttggttcaaggcgctctgctgctgattt
gatgacctgagtttgattcctgggactctacatggc
gaattctcagctgtaaaagaatccagatgttctaagatgatttggggggg
atgccaaaaggatgccagatttttacaaagacctgccaagtcttgatgtg
tgctccttaggaaccattctggaagagatgctgggaagtgcacccccccg
ccactccccctccacccccccccccaagcaagatattcgtgagaaaggga
ggaagacagagttgggtggacagaggagctgagcctcaatgttgtagcca
ctgaggtctaagccagttctacaggagctggggaggctccaaactgtgag
gagggggtccttagtaccacctgtgtcagctttactcactacaggctctc
atctaagacagtggttggagttttaacacagctcctcctgttgtgaggac
tctcaaccataaaattatcttgttgcggttctctcgacagctgtccctct
ttataagttggcactccgtaaggataaagccatgttcagctccagtgcca
agactgtgaagccaaatggggagaagccggatgagttccaagtctggcat
ctctcaggtgctgctcgagctggagatgaacgcagatgtcaaggctctgc
tgcaggaagtcaacatcaccacaaccaaggaaattgaagttggtggtggt
cggaaaagctaccataatttttgtaccagttccctcagtttttaagtctt
ttccagaaaattcatgtcatgctagtttcgtgaattggagaaaaaattca
ttgggaagcaagtagtgttcttgctcagaggaggatctgcccaagccaac
ctggaatatccgtatgaaatataagcaaagctccccagaatcacaccctg
acagtagtgcatgacagcagacttggtctcccagtgaaattgtgggtaga
ggatctgtgtgaaactggatggcgtccgctcataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_19975252_19976183
seq2: B6Ng01-080A10.b_30_965 (reverse)

seq1  GCCATGT-GAGTTCCAGGAATCAAACTCAGGTCATCAGACTCAGCAGCAG  49
      ||||||| |||| |||||||||||||||||||||||| | ||||||||||
seq2  GCCATGTAGAGTCCCAGGAATCAAACTCAGGTCATCA-AATCAGCAGCAG  49

seq1  AGCGCCTTG-ACCAACTGAGCCATCCTGCTGGTCCCCTGAAGTTTCCAGT  98
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCTTGAACCAACTGAGCCATCCTGCTGGTCCCCTGAAGTTTCCAGT  99

seq1  TTAATATGAACTCT-CCAGATGACCTATGCTCCTACAGTTCAGTGCAGTC  147
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTAATATGAACTCTCCCAGATGACCTATGCTCCTACAGTTCAGTGCAGTC  149

seq1  CTAGAGCAAGAACAGCTTGGGGAGGCGGAGAGGCAAGAC-TTAGAGCAGA  196
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTAGAGCAAGAACAGCTTGGGGAGGCGGAGAGGCAAGACTTTAGAGCAGA  199

seq1  TGTCAAGAACAGCTCCTAGCCACAGGGGCAGGATGTGAAGCTTCCAATGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGAACAGCTCCTAGCCACAGGGGCAGGATGTGAAGCTTCCAATGA  249

seq1  AACTTTCCAGTGCTCAGCTTCTACAAAAGTATCTGTAGCATTGTGTGTAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCCAGTGCTCAGCTTCTACAAAAGTATCTGTAGCATTGTGTGTAG  299

seq1  GAGAGAATAAATGTAACAACAACAGCAACAAAGGGTAGAGAGGTAGAACC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAATAAATGTAACAACAACAGCAACAAAGGGTAGAGAGGTAGAACC  349

seq1  ACTGCTGCATTGACAGACACAAATGAGCAGGAGATTCCAGAAAAAAATGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGCATTGACAGACACAAATGAGCAGGAGATTCCAGAAAAAAATGT  399

seq1  AGGTGATTTGTTTGGGCAGGAACTTGTACAACATGAGAACAGTCTTGAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATTTGTTTGGGCAGGAACTTGTACAACATGAGAACAGTCTTGAGA  449

seq1  GGAAGTCATGAAATTATGGATTCTGTCCCTGAGTCCCAGACCAAAGAGTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCATGAAATTATGGATTCTGTCCCTGAGTCCCAGACCAAAGAGTT  499

seq1  TAAATTTTTTCTCTGACAATGACAGTACATTTGCAGGCACTCTGAAACAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTTTCTCTGACAATGACAGTACATTTGCAGGCACTCTGAAACAC  549

seq1  AAAGTATCATTTGGATGATGAAGCCACAACCTCACCTTTGGACAAGGTGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATCATTTGGATGATGAAGCCACAACCTCACCTTTGGACAAGGTGC  599

seq1  CTTGCTTGATTGGGCTGATCAGCCAGAAGGCAAAGACCAGTGTCTTCTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTGATTGGGCTGATCAGCCAGAAGGCAAAGACCAGTGTCTTCTCT  649

seq1  TCTAAGTGAAAGCCAGAACACACACACAGGTTTGGGGAAGCCAGAAGGCC  696
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCTAAGTGAAAGCCAGAAGACACACACAGGTTTGGGGAAGCCAGAAGGCC  699

seq1  CCCAGTTGGAAGAAGGCAAGAAGCTGGAACTGTTTTCCCCCAAGCAGCTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTGGAAGAAGGCAAGAAGCTGGAACTGTTTTCCCCCAAGCAGCTG  749

seq1  TGGCGTACGAGCACTTGGATTTGGTTTGATTATTTAAATAGAATGTGCCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTACGAGCACTTGGATTTGGTTTGATTATTTAAATAGAATGTGCCT  799

seq1  CTCTCTGTCTCTCCTTGTTTTATATCAACATCTGAGGTGGCCACAACAGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTCTCTCCTTGTTTTATATCAACATCTGAGGTGGCCACAACAGT  849

seq1  ATCCAAATTACCCAGGTACTTGCTCTGCAAACAGCAGACTTTCAGCCATG  896
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATCCAAATTACCCAGGTACTTGCTCTGCAAACAGCAGACTTTCAGCCACG  899

seq1  AGC-CACAGCTGGAAAGCCCGTCTTGATGTGGAATTC  932
      |||  |||||||||||||||| |||||||||||||||
seq2  AGCAAACAGCTGGAAAGCCCGCCTTGATGTGGAATTC  936

seq1: chr8_19976178_19977115
seq2: B6Ng01-080A10.g_71_1006

seq1  GAATTCTCAGCTGTAAAAGAATCCAGATGTTCTAAGATGATTTGGGGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTGTAAAAGAATCCAGATGTTCTAAGATGATTTGGGGGGG  50

seq1  ATGCCAAAAGGATGCCAGATTTTTACAAAGACCTGCCAAGTCTTGATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAAAAGGATGCCAGATTTTTACAAAGACCTGCCAAGTCTTGATGTG  100

seq1  TGCTCCTTAGGAACCATTCTGGAAGAGATGCTGGGAAGTGCACCCCCCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTTAGGAACCATTCTGGAAGAGATGCTGGGAAGTGCACCCCCCCG  150

seq1  CCACTCCCCCTCCACCCCCTCCCCCAAGCAAGATATTCGTGAGAAAGGGA  200
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCACTCCCCCTCCACCCCCCCCCCCAAGCAAGATATTCGTGAGAAAGGGA  200

seq1  GGAAGACAGAGTTGGGTGGACAGAGGAGCTGAGCCTCAATGTTGTAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACAGAGTTGGGTGGACAGAGGAGCTGAGCCTCAATGTTGTAGCCA  250

seq1  CTGAGGTCTAAGCCAGTTCTACAGGAGCTGGGGAGGCTCCAAACTGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTCTAAGCCAGTTCTACAGGAGCTGGGGAGGCTCCAAACTGTGAG  300

seq1  GAGGGGGTCCTTAGTACCACCTGTGTCAGCTTTACTCACTACAGGCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGTCCTTAGTACCACCTGTGTCAGCTTTACTCACTACAGGCTCTC  350

seq1  ATCTAAGACAGTGGTTGGAGTTTTAACACAGCTCCTCCTGTTGTGAGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGACAGTGGTTGGAGTTTTAACACAGCTCCTCCTGTTGTGAGGAC  400

seq1  TCTCAACCATAAAATTATCTTGTTGCGGTTCTCTCGACAGCTGTCCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACCATAAAATTATCTTGTTGCGGTTCTCTCGACAGCTGTCCCTCT  450

seq1  TTATAAGTTGGCACTCCGTAAGGATGAAGCCATGTTCAGCTCCAGTGACA  500
      ||||||||||||||||||||||||| ||||||||||||||||||||| ||
seq2  TTATAAGTTGGCACTCCGTAAGGATAAAGCCATGTTCAGCTCCAGTGCCA  500

seq1  AGACTGTGAAGCCAAATGGGGAGAAGCCGGATGAGTTCCAAGTCTGGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTGAAGCCAAATGGGGAGAAGCCGGATGAGTTCCAAGTCTGGCAT  550

seq1  CTCTCAGGTGCTGCTTGAGCTGGAGATGAACGCAGATGTCAAGGCTCTGC  600
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTCTCAGGTGCTGCTCGAGCTGGAGATGAACGCAGATGTCAAGGCTCTGC  600

seq1  TGCAGGAAGTCAACATCACCACAACCAAGGAAATTGAAGTTGGTGGTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAAGTCAACATCACCACAACCAAGGAAATTGAAGTTGGTGGTGGT  650

seq1  CGG-AAAGCTACCATAATTTTTGTACCAGTT-CCTCAG-CTTTAAGTC-T  696
      ||| ||||||||||||||||||||||||||| ||||||  |||||||| |
seq2  CGGAAAAGCTACCATAATTTTTGTACCAGTTCCCTCAGTTTTTAAGTCTT  700

seq1  TTCCAGAAAATTCATGTCAGGCTAG-TTCGTGAATTGGAGAAAAAATTCA  745
      ||||||||||||||||||| ||||| ||||||||||||||||||||||||
seq2  TTCCAGAAAATTCATGTCATGCTAGTTTCGTGAATTGGAGAAAAAATTCA  750

seq1  GTGGGAAGCAAGTAGTGTTCATTGCTCAGAGGAGGATTCTGCCCAAGCCA  795
       ||||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  TTGGGAAGCAAGTAGTGTTC-TTGCTCAGAGGAGGA-TCTGCCCAAGCCA  798

seq1  ACCTGGAAAATCCGTATGAAAAATAAGCAGAAGCGCCCCAGAAACCACAC  845
      |||||||| |||||||||||| ||||||| |||| |||||| || |||||
seq2  ACCTGGAATATCCGTATGAAATATAAGCA-AAGCTCCCCAG-AATCACAC  846

seq1  CCTGACAGTAGTGCATGACAGCAGACTTGGTCTTCCCAAGTGAAATTGTG  895
      |||||||||||||||||||||||||||||||||  || ||||||||||||
seq2  CCTGACAGTAGTGCATGACAGCAGACTTGGTCT--CCCAGTGAAATTGTG  894

seq1  GGTAGAGGATCTGTGTGAAACTGGATGGCAGCCGGCTCATAAA  938
      ||||||||||||||||||||||||||||| | | |||||||||
seq2  GGTAGAGGATCTGTGTGAAACTGGATGGC-GTCCGCTCATAAA  936