BAC Information

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BAC

Clone NameB6Ng01-080C17
Chromosome8 (Build37)
Map Location 96,798,718 - 96,946,937
singlet/doubletdoublet
Overlap geneNup93, Slc12a3, Herpud1, EG434339
Upstream geneAU018778, Ces1, 2310039D24Rik, Ces7, Gnao1, Amfr, Nudt21, Ogfod1, Bbs2, Mt4, Mt3, Mt2, Mt1, LOC100041555
Downstream geneAI451557, Cpne2, 2310065K24Rik, Rspry1, Arl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3, BC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080C17.bB6Ng01-080C17.g
ACCDH895382DH895383
length1,1441,051
definitionDH895382|Mus musculus domesticus DNA, BAC clone: B6Ng01-080C17, 5' end.DH895383|Mus musculus domesticus DNA, BAC clone: B6Ng01-080C17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,945,774 - 96,946,937)(96,798,718 - 96,799,769)
sequence
gaattcctccgcatgcaaataaggcatccccagcaccctggcccagccaa
tggtgtacactcatcctgaagacccctactcacccccatgcaaaggttaa
acaccttgtgtctcccctaataaattgaaccagttctctgaagctgtttc
ctgtgtgtgttctttgcctgcacgcacccacccgcctgcctgagcttccc
tccttccagtctgctctggttgcataacaggcctgggtatcccacaggag
aactggacctggggcagcagatgacatctcaggtatacaatagaattcaa
tagatcctaggggatctctgctgctttggtagtaccccaggatgttgctg
tgacaagtctgccactgtgacattctgcttacccagtctctgaactgctc
acaacccctagcgcattgcctttgctactctgcatcctgattggagtata
tgccttattcctgaggacacttagagatgtgttatataggtcttggcctc
ttggtgtctctcacagcttctctcctgaatcaagggcctcgggtggtgca
cacgcactatgtgagctgggaaggcagttgctagaggaagggttgatgtt
gacagattcttcagagggtggccttgatctaactttgggggaggagcctt
gggggttgccagggcaataccagaagggcacctaccagaggggccatgcc
atagatttgttcagcttgcgacaggatggataagatgtgttccttccatg
tttctattcccttattccccttcccaaagaagtgcattcccagatcctgg
acagtgcattttctggcagcaggaatcatggaaccaagaagacagtcccc
atctcttttggcccactctgagccccaatcaagagatccagccttccagt
gttcctgttctaccgtgagttgcaggtaacaccttcatccagctccattg
gcctgattcaaaagtctcagctctgcaggacgtccactagcaggtgtctt
ggaaaccaaattcaggaagctctgcagaaacagtgctggctgttctgaac
accggagaaagctcctagtactaccaccacttaaatggttatctagtgac
ccatctaagtaccaggaagaactctcatcagaatggcttaatca
gaattctctatgtagatcaggctggcctcaaattgacaagagatccgcct
gcctctgcatcccaagtgctaggattaaaggcatgtgccaccactccttt
tcttgcttattttgtctttatgccttttattcatgccttggcagttcatt
caattgtagtgttcattcctaatatcactgttgacttcacattaatattt
tgatttgggggctggctagatgactcatcgagtaaaagcatttgctgcca
aatctaagaacttgagctcaaactctggaagccatgtgatggaaggagag
aaccaactcactggttgtctctgacctctgacctctacatgtgtcatgac
ccctggcccaaataagaaaatgtaaaattttaaatgtaagtattttgaat
gttggttattacagagttcctgttgatttgtatctgtcatgcatattaaa
tgggaggcagcaccgaggttctgtgctgtccactgtggattttgcatctt
gtcagatacccacgggctgtagtgctgtctccatttgacagcatggttgg
ctggttggtctgttgaaggaaagagagaataaggagtgttttgtgtcatg
agggccatatcaaatatggcttttcctttgtgcagcagcctctaatttaa
tgcatatctgtgtgaacagcagtgaggaactttatatgtttcttcaagtc
atgcttacttgtaaatggaagctgagacctgtttaaaaaaaagcagcata
aaatatattttttaatggcttttcttttctgacttaactgtacatagaaa
atttcctcattagagattcttatttttgtttagattttattattttattt
tcatgtatgtgaggacaccatcactgttcttcagacacacagaagaggac
atccggatctcattacagatgggtgtgagccacctatggttgctgggaat
tgaactcaggacctctggagagcagtcagtgctctcactgctgatccatc
tctcagccctaggaatcctttttaaagattagttgtatgtgtctggcatg
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_96945774_96946937
seq2: B6Ng01-080C17.b_44_1187 (reverse)

seq1  TGATCTAAGCCATTCCTGATTGAGAGTTCTCTCTGGTAACTTTAGACTGC  50
      |||| ||||||||| |||| ||||||||||  ||||||   ||||| || 
seq2  TGAT-TAAGCCATT-CTGA-TGAGAGTTCTTCCTGGTA--CTTAGA-TGG  44

seq1  GTCAACTAGATAACCATTCTAAAGTGTTTGGTAGCTACTAGGAAGCTCTC  100
      ||| |||||||||||||  | |||||  |||||| ||||||| |||| ||
seq2  GTC-ACTAGATAACCAT--TTAAGTG-GTGGTAG-TACTAGG-AGCTTTC  88

seq1  TTCCGGTGTTTCAGAAACAGCCTGCCTCTGTCTCCTGCAGAGCTTCCTGA  150
       ||||||| ||||| ||||||| | | |||| | ||||||||||||||||
seq2  -TCCGGTG-TTCAG-AACAGCCAG-CACTGT-TTCTGCAGAGCTTCCTGA  133

seq1  ATTTTGGTTTTCCAGATCACCTGCTAGTGGACGTCCTGCAGAGCTGAGAC  200
      | |||||||| | ||| |||||||||||||||||||||||||||||||||
seq2  A-TTTGGTTTCCAAGA-CACCTGCTAGTGGACGTCCTGCAGAGCTGAGAC  181

seq1  TTTTGGAATCAAGGCCAATGGAGCTGGATTGAAGGTGTTACCTGCAACTC  250
      |||| ||||| ||||||||||||||||| |||||||||||||||||||||
seq2  TTTT-GAATC-AGGCCAATGGAGCTGGA-TGAAGGTGTTACCTGCAACTC  228

seq1  ACGGTAGAACAGGAACACTGGAAGGCTGGATCTCTTGATTGGGGCTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTAGAACAGGAACACTGGAAGGCTGGATCTCTTGATTGGGGCTCAGA  278

seq1  GTGGGGCCAAAGAGATGGGGACTGTCTTCTTGGTTCCCTGATTCCTGCTG  350
      ||||| | ||||||||||||||||||||||||||||| ||||||||||||
seq2  GTGGGCCAAAAGAGATGGGGACTGTCTTCTTGGTTCCATGATTCCTGCTG  328

seq1  CCAGAAAATGCACTGTCCAGGATCTGGGAATGCACTTC-TTGGGAAGGGG  399
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCAGAAAATGCACTGTCCAGGATCTGGGAATGCACTTCTTTGGGAAGGGG  378

seq1  AATAAGGGAATAG-AACATGGAAGGAACACATCTTATCCATCCTGTCGCA  448
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AATAAGGGAATAGAAACATGGAAGGAACACATCTTATCCATCCTGTCGCA  428

seq1  AGCTGAACAAATCTATGGCATGGCCCCTCTGGTAGGTGCCCTTCTGGTAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAACAAATCTATGGCATGGCCCCTCTGGTAGGTGCCCTTCTGGTAT  478

seq1  TGCCCTGGCAACCCCCAAGGCTCCTCCCCCAAAGTTAGATCAAGGCCACC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGGCAACCCCCAAGGCTCCTCCCCCAAAGTTAGATCAAGGCCACC  528

seq1  CTCTGAAGAATCTGTCAACATCAACCCTTCCTCTAGCAACTGCCTTCCCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAGAATCTGTCAACATCAACCCTTCCTCTAGCAACTGCCTTCCCA  578

seq1  GCTCACATAGTGCGTGTGCACCACCCGAGGCCCTTGATTCAGGAGAGAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACATAGTGCGTGTGCACCACCCGAGGCCCTTGATTCAGGAGAGAAG  628

seq1  CTGTGAGAGACACCAAGAGGCCAAGACCTATATAACACATCTCTAAGTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGAGACACCAAGAGGCCAAGACCTATATAACACATCTCTAAGTGT  678

seq1  CCTCAGGAATAAGGCATATACTCCAATCAGGATGCAGAGTAGCAAAGGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGAATAAGGCATATACTCCAATCAGGATGCAGAGTAGCAAAGGCA  728

seq1  ATGCGCTAGGGGTTGTGAGCAGTTCAGAGACTGGGTAAGCAGAATGTCAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGCTAGGGGTTGTGAGCAGTTCAGAGACTGGGTAAGCAGAATGTCAC  778

seq1  AGTGGCAGACTTGTCACAGCAACATCCTGGGGTACTACCAAAGCAGCAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCAGACTTGTCACAGCAACATCCTGGGGTACTACCAAAGCAGCAGA  828

seq1  GATCCCCTAGGATCTATTGAATTCTATTGTATACCTGAGATGTCATCTGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCCTAGGATCTATTGAATTCTATTGTATACCTGAGATGTCATCTGC  878

seq1  TGCCCCAGGTCCAGTTCTCCTGTGGGATACCCAGGCCTGTTATGCAACCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCAGGTCCAGTTCTCCTGTGGGATACCCAGGCCTGTTATGCAACCA  928

seq1  GAGCAGACTGGAAGGAGGGAAGCTCAGGCAGGCGGGTGGGTGCGTGCAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGACTGGAAGGAGGGAAGCTCAGGCAGGCGGGTGGGTGCGTGCAGG  978

seq1  CAAAGAACACACACAGGAAACAGCTTCAGAGAACTGGTTCAATTTATTAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAACACACACAGGAAACAGCTTCAGAGAACTGGTTCAATTTATTAG  1028

seq1  GGGAGACACAAGGTGTTTAACCTTTGCATGGGGGTGAGTAGGGGTCTTCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACACAAGGTGTTTAACCTTTGCATGGGGGTGAGTAGGGGTCTTCA  1078

seq1  GGATGAGTGTACACCATTGGCTGGGCCAGGGTGCTGGGGATGCCTTATTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGTGTACACCATTGGCTGGGCCAGGGTGCTGGGGATGCCTTATTT  1128

seq1  GCATGCGGAGGAATTC  1164
      ||||||||||||||||
seq2  GCATGCGGAGGAATTC  1144

seq1: chr8_96798718_96799769
seq2: B6Ng01-080C17.g_70_1120

seq1  GAATTCTCTATGTAGATCAGGCTGGCCTCAAATTGACAAGAGATCCGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATGTAGATCAGGCTGGCCTCAAATTGACAAGAGATCCGCCT  50

seq1  GCCTCTGCATCCCAAGTGCTAGGATTAAAGGCATGTGCCACCACTCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCATCCCAAGTGCTAGGATTAAAGGCATGTGCCACCACTCCTTT  100

seq1  TCTTGCTTATTTTGTCTTTATGCCTTTTATTCATGCCTTGGCAGTTCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTATTTTGTCTTTATGCCTTTTATTCATGCCTTGGCAGTTCATT  150

seq1  CAATTGTAGTGTTCATTCCTAATATCACTGTTGACTTCACATTAATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTAGTGTTCATTCCTAATATCACTGTTGACTTCACATTAATATTT  200

seq1  TGATTTGGGGGCTGGCTAGATGACTCATCGAGTAAAAGCATTTGCTGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGGGGGCTGGCTAGATGACTCATCGAGTAAAAGCATTTGCTGCCA  250

seq1  AATCTAAGAACTTGAGCTCAAACTCTGGAAGCCATGTGATGGAAGGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAGAACTTGAGCTCAAACTCTGGAAGCCATGTGATGGAAGGAGAG  300

seq1  AACCAACTCACTGGTTGTCTCTGACCTCTGACCTCTACATGTGTCATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACTCACTGGTTGTCTCTGACCTCTGACCTCTACATGTGTCATGAC  350

seq1  CCCTGGCCCAAATAAGAAAATGTAAAATTTTAAATGTAAGTATTTTGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCCCAAATAAGAAAATGTAAAATTTTAAATGTAAGTATTTTGAAT  400

seq1  GTTGGTTATTACAGAGTTCCTGTTGATTTGTATCTGTCATGCATATTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTATTACAGAGTTCCTGTTGATTTGTATCTGTCATGCATATTAAA  450

seq1  TGGGAGGCAGCACCGAGGTTCTGTGCTGTCCACTGTGGATTTTGCATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCAGCACCGAGGTTCTGTGCTGTCCACTGTGGATTTTGCATCTT  500

seq1  GTCAGATACCCACGGGCTGTAGTGCTGTCTCCATTTGACAGCATGGTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATACCCACGGGCTGTAGTGCTGTCTCCATTTGACAGCATGGTTGG  550

seq1  CTGGTTGGTCTGTTGAAGGAAAGAGAGAATAAGGAGTGTTTTGTGTCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGGTCTGTTGAAGGAAAGAGAGAATAAGGAGTGTTTTGTGTCATG  600

seq1  AGGGCCATATCAAATATGGCTTTTCCTTTGTGCAGCAGCCTCTAATTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCATATCAAATATGGCTTTTCCTTTGTGCAGCAGCCTCTAATTTAA  650

seq1  TGCATATCTGTGTGAACAGCAGTGAGGAACTTTATATG-TTCTTCAAGTC  699
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGCATATCTGTGTGAACAGCAGTGAGGAACTTTATATGTTTCTTCAAGTC  700

seq1  ATGCTTACTTGTAAATGGAAGCTGAGACCTGTTTAAAAAAAAGCAGCATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTACTTGTAAATGGAAGCTGAGACCTGTTTAAAAAAAAGCAGCATA  750

seq1  AAATATATTTTTTAATGGCTTTTCTTTTCTGACTTAACTGTACATAGAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTTTTTAATGGCTTTTCTTTTCTGACTTAACTGTACATAGAAA  800

seq1  ATTTCCTCATTAGAGATTCTTATTTTTGTTTAAGATTTATTTATTTA-TT  848
      ||||||||||||||||||||||||||||||||   ||||||  |||| ||
seq2  ATTTCCTCATTAGAGATTCTTATTTTTGTTTAGATTTTATTATTTTATTT  850

seq1  TCATGTATGTGAGGACACCATCACTG-TCTTCAGACACACCAGAAGAGGA  897
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  TCATGTATGTGAGGACACCATCACTGTTCTTCAGACACA-CAGAAGAGGA  899

seq1  CAT-CGGATCTCATTACAGATGGTTGTGAGCCACCTTATGGTTGCTGGGA  946
      ||| ||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  CATCCGGATCTCATTACAGATGGGTGTGAGCCACC-TATGGTTGCTGGGA  948

seq1  ATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACTGCTGAGC  996
      |||||||||||||||||||| |||||||||||||||| | |||||||| |
seq2  ATTGAACTCAGGACCTCTGG-AGAGCAGTCAGTGCTC-TCACTGCTGATC  996

seq1  CATCTCTCCAGCCCTAGAGATTCTTTTTTAAAAGATTATGTTGTATGTGT  1046
      ||||||| |||||||||  || ||||||  |||||||| |||||||||||
seq2  CATCTCT-CAGCCCTAGGAATCCTTTTT--AAAGATTA-GTTGTATGTGT  1042

seq1  ---GCATGC  1052
         ||||||
seq2  CTGGCATGC  1051