BAC Information

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BAC

Clone NameB6Ng01-080L08
Chromosome8 (Build37)
Map Location 14,930,456 - 15,103,898
singlet/doubletdoublet
Overlap geneArhgef10, 2900016B01Rik, 5830468F06Rik, Kbtbd11, BB014433, Myom2
Upstream geneFbxo25, LOC100041103, 2610019F03Rik, EG546036, Erich1, Dlgap2, LOC100041140, C030037F17Rik, Cln8
Downstream geneEG665599, EG234097, EG665619, LOC634008, Csmd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080L08.bB6Ng01-080L08.g
ACCDH895771DH895772
length1,1231,145
definitionDH895771|Mus musculus domesticus DNA, BAC clone: B6Ng01-080L08, 5' end.DH895772|Mus musculus domesticus DNA, BAC clone: B6Ng01-080L08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,930,456 - 14,931,586)(15,102,725 - 15,103,898)
sequence
gaattcacgtggtcttaactctagagttggccaaagccctacgttctctg
taacttaccatcactgttctagagtccatagtgtcccatcatcctctaat
ccacacacctcagaatggggtctctgtaatcctgtctgtggtaaagagtc
acttgtccttcggtcctggtacagagagcgctgcttatacatagtgaaat
aagtaaatacacagattaatacacaaaatgaattgttttaaatcatgtga
aataattttcaaatagagtactttaagttgttcaattattcatcacttca
aaatgatagattccttccccaaatcagtactggagtactgtacgatattt
agtactcagtgctcagtactagagccttgtgcatgctaggctctagtact
cagtactgagtactaaatattgtactctgccagtgagccatatccacagt
cctttcggcttcctattttgagaccaggtcttaccaaactgcccaggttg
gccttgaactcactccataacccaggcagtcaagaattcacgatccccct
gcctcagctgccccaagtagctgttccacatgcctggcatgcgaacacat
tttctttgactgcaaagacccttgttttttaggacgcactgcaggtcgtg
gtcgagtctcagcacttatatggtagatttccagaggaaacagttatctt
taaaactctctatggtttctaggattcaaaactgagttttctttaaagag
cgttttctcagttcttagctgtaaagctaagaaccctcgctgaattcttc
gtgtaactctaaatcagaattctgtatcctctgagtctccctgagtgtag
aggactgtctcaccttggttaggaagcactcagcagacagaccccactga
gggctggccagccactggaaacccggtacccatgtcccgccctagaggag
gggcggctgtgttccacatcctcagggtcaccccccgccggccccctctc
cccctcacatacagtcagctttcagaaggcttgcagccagctggagctgg
ggctggacacctgtggaaagcctggtctggaaaaagagctctgggcatgt
aggccttaggtggcctcttcctg
gaattccatatttagagtaagaaagcaagtcaacagaactgattatattg
catatggtgtcagagtctgagatcctgcctaaggtcttacatctggagcc
tctccctactgaagctctgctgcagcatctgacgcctgacatgcgggagg
tttgtgcattgaaactgaatgcagggcaggcattccacagtgggtataga
ggctaggaccccccaattcacacagacaggctggagcgctggatttgaca
cccgccagaccatatgtcccttgtcatgttccttgacacctacaaggctc
tgttttctctcctggagagcagggatgccccgtcctcacagagctgccaa
gaacttcacagggagaaccatgcagacaaaccttggcccatctgcctggc
ccacagcaagtattcaggaaacagaagcagttgtactgactctgtagtca
gtacagtttatcaacatccagcaaacacctccctgtgaataccccggggc
tcttcctctgacggatctttctccagtgacagtgtgtactgatagacctt
ctggctgtggttcgcatatacgactgcatttaaaaataagccttttaaaa
aaaaacatttttaaataaagatggtagatctaccactgagaccctccaca
gcagccactgtgacacagcctatggagcacgtggtgcagaaaatgcaaac
ccagacagcctaggtgtcctgggcaaaaaagacacagaagaagcaaaatt
tcaaaagttaagactctggcttcccactgcagaagacatgggtctccctt
gtactgcacagccaggatcagcattccctgtccccaccccatcaagtgct
aaggacaaaactgcccttaagtgaacaaagcagatctaccctgctcgccc
tgaccccacataaatccaacttaaatgatagttattgttatatattatat
acatatgttcattgtggcatgcatacacgcagttatttattaaatatata
gaagagtatttttttttcaatagacagttttctcgtgatgtgacccacca
tatggagtcagtcttagattgtctatccactggtgactaaacaaagagag
tctaaggagggccatggcatttatctgtggtctctcgacctggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_14930456_14931586
seq2: B6Ng01-080L08.b_44_1166

seq1  GAATTCACGTGGTCTTAACTCTAGAGTTGGCCAAAGCCCTACGTTCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGTGGTCTTAACTCTAGAGTTGGCCAAAGCCCTACGTTCTCTG  50

seq1  TAACTTACCATCACTGTTCTAGAGTCCATAGTGTCCCATCATCCTCTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTACCATCACTGTTCTAGAGTCCATAGTGTCCCATCATCCTCTAAT  100

seq1  CCACACACCTCAGAATGGGGTCTCTGTAATCCTGTCTGTGGTAAAGAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACACCTCAGAATGGGGTCTCTGTAATCCTGTCTGTGGTAAAGAGTC  150

seq1  ACTTGTCCTTCGGTCCTGGTACAGAGAGCGCTGCTTATACATAGTGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCCTTCGGTCCTGGTACAGAGAGCGCTGCTTATACATAGTGAAAT  200

seq1  AAGTAAATACACAGATTAATACACAAAATGAATTGTTTTAAATCATGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATACACAGATTAATACACAAAATGAATTGTTTTAAATCATGTGA  250

seq1  AATAATTTTCAAATAGAGTACTTTAAGTTGTTCAATTATTCATCACTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTTCAAATAGAGTACTTTAAGTTGTTCAATTATTCATCACTTCA  300

seq1  AAATGATAGATTCCTTCCCCAAATCAGTACTGGAGTACTGTACGATATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATAGATTCCTTCCCCAAATCAGTACTGGAGTACTGTACGATATTT  350

seq1  AGTACTCAGTGCTCAGTACTAGAGCCTTGTGCATGCTAGGCTCTAGTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTCAGTGCTCAGTACTAGAGCCTTGTGCATGCTAGGCTCTAGTACT  400

seq1  CAGTACTGAGTACTAAATATTGTACTCTGCCAGTGAGCCATATCCACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTGAGTACTAAATATTGTACTCTGCCAGTGAGCCATATCCACAGT  450

seq1  CCTTTCGGCTTCCTATTTTGAGACCAGGTCTTACCAAACTGCCCAGGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCGGCTTCCTATTTTGAGACCAGGTCTTACCAAACTGCCCAGGTTG  500

seq1  GCCTTGAACTCACTCCATAACCCAGGCAGTCAAGAATTCACGATCCCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAACTCACTCCATAACCCAGGCAGTCAAGAATTCACGATCCCCCT  550

seq1  GCCTCAGCTGCCCCAAGTAGCTGTTCCACATGCCTGGCATGCGAACACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGCTGCCCCAAGTAGCTGTTCCACATGCCTGGCATGCGAACACAT  600

seq1  TTTCTTTGACTGCAAAGACCCTTGTTTTTTAGGACGCACTGCAGGTCGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGACTGCAAAGACCCTTGTTTTTTAGGACGCACTGCAGGTCGTG  650

seq1  GTCGAGTCTCAGCACTTATATGGTAGATTTCCAGAGGAAACAGTTATCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGAGTCTCAGCACTTATATGGTAGATTTCCAGAGGAAACAGTTATCTT  700

seq1  TAAAACTCTCTATGGTTTCTAGGATTCAAAACTGAGTTTTCTTTAAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTCTCTATGGTTTCTAGGATTCAAAACTGAGTTTTCTTTAAAGAG  750

seq1  CGTTTTCTCAGTTCTTAGCTGTAAAGCTAAGAACCCTCGCTGAATTCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTCTCAGTTCTTAGCTGTAAAGCTAAGAACCCTCGCTGAATTCTTC  800

seq1  GTGTAACTCTAAATCAGAATTCTGTATCCTCTGAGTCTCCCTGAGTGTAA  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTGTAACTCTAAATCAGAATTCTGTATCCTCTGAGTCTCCCTGAGTGT-A  849

seq1  GAGGACTGTCTCACCTTGGTTAGGAAGCACTCAGCAGACAGACCCCACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTGTCTCACCTTGGTTAGGAAGCACTCAGCAGACAGACCCCACTG  899

seq1  AGGGGCTGGCCAGCCACTGGACACCCGGTACCCATGTCCCGCCCTAGAGG  950
      | ||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  A-GGGCTGGCCAGCCACTGGAAACCCGGTACCCATGTCCCGCCCTAGAGG  948

seq1  AGGGGCGGCTGTGTTCCACATCCTCAGGGTCACCCCCCCGCCCGCCCCCC  1000
      ||||||||||||||||||||||||||||||||||||||   ||| |||||
seq2  AGGGGCGGCTGTGTTCCACATCCTCAGGGTCACCCCCC--GCCGGCCCCC  996

seq1  TCTCCCCCCTCACCATACAGTCAGCTTTCAGAAGGCTGGCAGCCCAGCTG  1050
      ||| |||||||| |||||||||||||||||||||||| |||| |||||||
seq2  TCT-CCCCCTCA-CATACAGTCAGCTTTCAGAAGGCTTGCAG-CCAGCTG  1043

seq1  GAGCTTGGGCCTGGACACCTGTGAAAAGCCTGTCCTGG-AGAAGAGCTCT  1099
      |||| |||| ||||||||||||| ||||||||  |||| | |||||||||
seq2  GAGC-TGGGGCTGGACACCTGTGGAAAGCCTGGTCTGGAAAAAGAGCTCT  1092

seq1  GGTCATGTTGGCCCTCTAGTGGCCTCTTCCTG  1131
      || ||||| || |||   ||||||||||||||
seq2  GGGCATGTAGG-CCTTAGGTGGCCTCTTCCTG  1123

seq1: chr8_15102725_15103898
seq2: B6Ng01-080L08.g_68_1212 (reverse)

seq1  TCCCAGAGCTCGAGAGACCACAGTAGAATGCCCATGGCCCCTCCTTTAGA  50
      ||||  || ||||||||||||||   |||| |||||| |||||| |||||
seq2  TCCC--AGGTCGAGAGACCACAGATAAATG-CCATGG-CCCTCC-TTAGA  45

seq1  CTTCTTCCTTTTGTTTAGTCACATGTTGGGATATGACATTCTAAAGTACT  100
      |    ||  |||||||||||||  ||  ||||| |||| |||||   |||
seq2  C----TCTCTTTGTTTAGTCACCAGT--GGATA-GACAATCTAA--GACT  86

seq1  GACTCCATATGGGTGGGTCACATCACTGAGAAAAACTTGTCTATTGATAA  150
      |||||||||| ||||||||||||||| |||||||   |||||||||| ||
seq2  GACTCCATAT-GGTGGGTCACATCAC-GAGAAAA--CTGTCTATTGAAAA  132

seq1  AAAAATAACCTCTTTCTATTATTATTTTAATTATATAACTGCGTGGTATG  200
      |||||||  ||| |||||    ||| || | || |||||||||| |||||
seq2  AAAAATA--CTC-TTCTA----TATATTTAATAAATAACTGCGT-GTATG  174

seq1  CAATGCCACAATTGAACATATGTATATAATATATAACAATAACTATCATT  250
      | ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  C-ATGCCACAA-TGAACATATGTATATAATATATAACAATAACTATCATT  222

seq1  TAAGTTGGATTTATGTGGGGTCAGGGCGAGCAGGGTAGATCCTGCTTTGT  300
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAAGTTGGATTTATGTGGGGTCAGGGCGAGCAGGGTAGAT-CTGCTTTGT  271

seq1  TCACTTAAGGGCAGTTTTGTCCTTAGCACTTGATGGGGTGGGGACAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAAGGGCAGTTTTGTCCTTAGCACTTGATGGGGTGGGGACAGGGA  321

seq1  ATGCTGATCCTGGCTGTGCAGTACAAGGGAGACCCATGTCTTCTGCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGATCCTGGCTGTGCAGTACAAGGGAGACCCATGTCTTCTGCAGTG  371

seq1  GGAAGCCAGAGTCTTAACTTTTGAAATTTTGCTTCTTCTGTGTCTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCAGAGTCTTAACTTTTGAAATTTTGCTTCTTCTGTGTCTTTTTT  421

seq1  GCCCAGGACACCTAGGCTGTCTGGGTTTGCATTTTCTGCACCACGTGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGACACCTAGGCTGTCTGGGTTTGCATTTTCTGCACCACGTGCTC  471

seq1  CATAGGCTGTGTCACAGTGGCTGCTGTGGAGGGTCTCAGTGGTAGATCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCTGTGTCACAGTGGCTGCTGTGGAGGGTCTCAGTGGTAGATCTA  521

seq1  CCATCTTTATTTAAAAATGTTTTTTTTTAAAAGGCTTATTTTTAAATGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTTATTTAAAAATGTTTTTTTTTAAAAGGCTTATTTTTAAATGCA  571

seq1  GTCGTATATGCGAACCACAGCCAGAAGGTCTATCAGTACACACTGTCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTATATGCGAACCACAGCCAGAAGGTCTATCAGTACACACTGTCACT  621

seq1  GGAGAAAGATCCGTCAGAGGAAGAGCCCCGGGGTATTCACAGGGAGGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGATCCGTCAGAGGAAGAGCCCCGGGGTATTCACAGGGAGGTGT  671

seq1  TTGCTGGATGTTGATAAACTGTACTGACTACAGAGTCAGTACAACTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGATGTTGATAAACTGTACTGACTACAGAGTCAGTACAACTGCTT  721

seq1  CTGTTTCCTGAATACTTGCTGTGGGCCAGGCAGATGGGCCAAGGTTTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCCTGAATACTTGCTGTGGGCCAGGCAGATGGGCCAAGGTTTGTC  771

seq1  TGCATGGTTCTCCCTGTGAAGTTCTTGGCAGCTCTGTGAGGACGGGGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGTTCTCCCTGTGAAGTTCTTGGCAGCTCTGTGAGGACGGGGCAT  821

seq1  CCCTGCTCTCCAGGAGAGAAAACAGAGCCTTGTAGGTGTCAAGGAACATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTCTCCAGGAGAGAAAACAGAGCCTTGTAGGTGTCAAGGAACATG  871

seq1  ACAAGGGACATATGGTCTGGCGGGTGTCAAATCCAGCGCTCCAGCCTGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGACATATGGTCTGGCGGGTGTCAAATCCAGCGCTCCAGCCTGTC  921

seq1  TGTGTGAATTGGGGGGTCCTAGCCTCTATACCCACTGTGGAATGCCTGCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAATTGGGGGGTCCTAGCCTCTATACCCACTGTGGAATGCCTGCC  971

seq1  CTGCATTCAGTTTCAATGCACAAACCTCCCGCATGTCAGGCGTCAGATGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTCAGTTTCAATGCACAAACCTCCCGCATGTCAGGCGTCAGATGC  1021

seq1  TGCAGCAGAGCTTCAGTAGGGAGAGGCTCCAGATGTAAGACCTTAGGCAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAGAGCTTCAGTAGGGAGAGGCTCCAGATGTAAGACCTTAGGCAG  1071

seq1  GATCTCAGACTCTGACACCATATGCAATATAATCAGTTCTGTTGACTTGC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCAGACTCTGACACCATATGCAATATAATCAGTTCTGTTGACTTGC  1121

seq1  TTTCTTACTCTAAATATGGAATTC  1174
      ||||||||||||||||||||||||
seq2  TTTCTTACTCTAAATATGGAATTC  1145