BAC Information

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BAC

Clone NameB6Ng01-080M04
Chromosome8 (Build37)6 (Build37)
Map Location 79,079,772 - 79,080,89123,187,137 - 23,187,466
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1700007B14Rik, LOC666036, LOC100039185, EG631594, LOC666226
Downstream geneLOC100039211, LOC384847, Nr3c2, Arhgap10, LOC100039235, AI931714
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080M04.bB6Ng01-080M04.g
ACCDH895807DH895808
length1,107326
definitionDH895807|Mus musculus domesticus DNA, BAC clone: B6Ng01-080M04, 5' end.DH895808|Mus musculus domesticus DNA, BAC clone: B6Ng01-080M04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,079,772 - 79,080,891)(23,187,137 - 23,187,466)
sequence
gaattcttatcacatcaatattttaactgtaggacatcagggctatctta
gataaaatacagtgttacatgctaactgtaccaaatacagtgttacatgc
taactgtaccaaacaaaggctgtgcatttacagagctattgtcatgttat
gcaagagtaaccattgttagggcactaaatggactcctgtgttacctcct
tggatcggctctcaaaactctacttttttacttcctaacctctactaaaa
atagacttgtactcaaaagccaagaatttcaccacataaaacactctagg
cactgagagatggctcagtgggataagactgcttgattttcaagcattag
gaccagagttcatatccccactaacaatgaaaagaagagacatcactatg
catgcttgtaactgcaatattggggtaacctgtaactgaaatcgtggagt
tcagacacaagcatatcctcagagttaattgaccaatcagcctagctgaa
acagcgagcttccagtttagagaaagatcatgtctcagggcgataaggta
gagagtaatagaggaagacacctaacttttggcctctacacattcataca
caggtgtaccttatgaatgtaaatataacacacacacacacaaacacaca
cacacacacacacacacacacacacacacacacacacaccatgcataaac
aacaagatcttttggacaacaatgtaaccatactagccaactaaccaact
agagttgttttgtactcatcaatgtgcacacatgttgtctgctgtgttat
ctagagtggaaagaaaagcaaggtgtacattgcttgcaaaaaatcctgtt
ctcctcttatactgtgttcttagacaattaccctttgcctactttctaga
attactaatctcttcccaggcatttattttattttaaaaaatgtcctgct
ggctatgattgcagtaagctcagctcttgggacacagaagcaagaggatt
atgaatttgatatcacaaagtgcatagcagacttgtctcaaaagaaagaa
aaacttcatgtctgttcttattttctactgtagaagtagtagtatttctt
ctacagg
tttgttcagctctgagccccatgttttaagggggttatttgattttctgg
agtccaccctcttgagttctttatatatattggatattagtcccctatct
gattaagataggtaaagatccttttccaatctgttggtggtctttttgtc
ttattgacggtgtcttttgccttgcagaagctttgcagtttcatgaggtc
ccatttgtcaatcctcgatcttacagcacaagccattgctgttctattca
ggattttttccgtgtgcccatatcttcgagacttttccccactttctcct
ctataagtttcagtttctctggtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_79079772_79080891
seq2: B6Ng01-080M04.b_45_1151

seq1  GAATTCTTATCACATCAATATTTTAACTGTAGGACATCAGGGCTATCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATCACATCAATATTTTAACTGTAGGACATCAGGGCTATCTTA  50

seq1  GATAAAATACAGTGTTACATGCTAACTGTACCAAATACAGTGTTACATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAATACAGTGTTACATGCTAACTGTACCAAATACAGTGTTACATGC  100

seq1  TAACTGTACCAAACAAAGGCTGTGCATTTACAGAGCTATTGTCATGTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTACCAAACAAAGGCTGTGCATTTACAGAGCTATTGTCATGTTAT  150

seq1  GCAAGAGTAACCATTGTTAGGGCACTAAATGGACTCCTGTGTTACCTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGTAACCATTGTTAGGGCACTAAATGGACTCCTGTGTTACCTCCT  200

seq1  TGGATCGGCTCTCAAAACTCTACTTTTTTACTTCCTAACCTCTACTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCGGCTCTCAAAACTCTACTTTTTTACTTCCTAACCTCTACTAAAA  250

seq1  ATAGACTTGTACTCAAAAGCCAAGAATTTCACCACATAAAACACTCTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTTGTACTCAAAAGCCAAGAATTTCACCACATAAAACACTCTAGG  300

seq1  CACTGAGAGATGGCTCAGTGGGATAAGACTGCTTGATTTTCAAGCATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGAGATGGCTCAGTGGGATAAGACTGCTTGATTTTCAAGCATTAG  350

seq1  GACCAGAGTTCATATCCCCACTAACAATGAAAAGAAGAGACATCACTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGAGTTCATATCCCCACTAACAATGAAAAGAAGAGACATCACTATG  400

seq1  CATGCTTGTAACTGCAATATTGGGGTAACCTGTAACTGAAATCGTGGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTGTAACTGCAATATTGGGGTAACCTGTAACTGAAATCGTGGAGT  450

seq1  TCAGACACAAGCATATCCTCAGAGTTAATTGACCAATCAGCCTAGCTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACACAAGCATATCCTCAGAGTTAATTGACCAATCAGCCTAGCTGAA  500

seq1  ACAGCGAGCTTCCAGTTTAGAGAAAGATCATGTCTCAGGGCGATAAGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGAGCTTCCAGTTTAGAGAAAGATCATGTCTCAGGGCGATAAGGTA  550

seq1  GAGAGTAATAGAGGAAGACACCTAACTTTTGGCCTCTACACATTCATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTAATAGAGGAAGACACCTAACTTTTGGCCTCTACACATTCATACA  600

seq1  CAGGTGTACCTTATGAATGTAAATATAACACACACACACACAAACACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTACCTTATGAATGTAAATATAACACACACACACACAAACACACA  650

seq1  CACACACACACACACACACACACACACACACACACACACCATGCATAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACCATGCATAAAC  700

seq1  AACAAGATCTTTTGGACAACAATGTAACCATACTAGCCAACTAACCAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGATCTTTTGGACAACAATGTAACCATACTAGCCAACTAACCAACT  750

seq1  AGAGTTGTTTTGTACTCATCAATGTGCACACATGTTGTCTGCTGTGTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGTTTTGTACTCATCAATGTGCACACATGTTGTCTGCTGTGTTAT  800

seq1  CTAGAGTGGAAAGAAAAGCAAGGTGTACATTGCTTGCAAAAAATCCTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTGGAAAGAAAAGCAAGGTGTACATTGCTTGCAAAAAATCCTGTT  850

seq1  CTCCTCTTATACTGTGTTCTTAGACAATTACCCTTTGCCTACTTTCTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTTATACTGTGTTCTTAGACAATTACCCTTTGCCTACTTTCTAGA  900

seq1  ATTACTAATCTCTTCCCAGGCATTTATTTTATTTTAAAAAAATGTCCTGC  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTACTAATCTCTTCCCAGGCATTTATTTTATTTT-AAAAAATGTCCTGC  949

seq1  TGGCTATGATTGCAGTAAGCTCAGCTCTTGGGACACAGAAGCAAGAGGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATGATTGCAGTAAGCTCAGCTCTTGGGACACAGAAGCAAGAGGAT  999

seq1  TATGAATTTGATATCAACCAAAGTTGCATAGCAAGACCTTGTCTCAAAAG  1050
      ||||||||||||||||  ||||| |||||||| ||| |||||||||||||
seq2  TATGAATTTGATATCA--CAAAG-TGCATAGC-AGA-CTTGTCTCAAAAG  1044

seq1  GAAAAGAAAAACTTCATTGTCTGTTCTTATTTTCTACTGTAAGAAGTAGG  1100
        |||||||||||||| ||||||||||||||||||||||| ||||||| |
seq2  --AAAGAAAAACTTCA-TGTCTGTTCTTATTTTCTACTGT-AGAAGTA-G  1089

seq1  TAGTTAATTTCTTCTACAGG  1120
      ||||  ||||||||||||||
seq2  TAGT--ATTTCTTCTACAGG  1107

seq1: chr6_23187137_23187466
seq2: B6Ng01-080M04.g_74_400 (reverse)

seq1  AAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTCA  50
      ||||||||||| ||||||||||||||||||||||||||||||||| ||| 
seq2  AAAACCAGAGAAACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGTCTCG  50

seq1  AAGATATGGGCACAGGGGGGGAAATTCCTGAATAGAACAGCAGTGGCTTG  100
      ||||||||||||||   ||  ||| ||||||||||||||||| |||||||
seq2  AAGATATGGGCACA--CGGAAAAAATCCTGAATAGAACAGCAATGGCTTG  98

seq1  TGCTGTAAGATCGAGAATTGACAAATGGGACCTCATAAAACTGCAAAGCT  150
      ||||||||||||||| |||||||||||||||||||| |||||||||||||
seq2  TGCTGTAAGATCGAGGATTGACAAATGGGACCTCATGAAACTGCAAAGCT  148

seq1  TCTGTAAGGCAAAAGACACGGTCAATAAGACAAAAAGGCTACCAACAGAT  200
      |||| |||||||||||||| ||||||||||||||||| | ||||||||||
seq2  TCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGAT  198

seq1  TGGGAAAGGATCTTTGCCTATCCTAAATCAGATAGGGGAATAATGTCCAA  250
      ||| ||||||||||| ||||| || |||||||||||||| |||| |||||
seq2  TGGAAAAGGATCTTTACCTAT-CTTAATCAGATAGGGGACTAATATCCAA  247

seq1  TATATATAAAGAACTCAAGGAGGTAGACTCCAGAAAATCAAATAACCCCA  300
      |||||||||||||||||||  ||| |||||||||||||||||||||||| 
seq2  TATATATAAAGAACTCAAGAGGGTGGACTCCAGAAAATCAAATAACCCCC  297

seq1  TTAAAAAATGGGGCTCAGAGCTAAACAAAG  330
      |||||| ||||||||||||||| |||||||
seq2  TTAAAACATGGGGCTCAGAGCTGAACAAAG  327