BAC Information

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BAC

Clone NameB6Ng01-080M21
Chromosome8 (Build37)
Map Location 47,653,568 - 47,817,191
singlet/doubletdoublet
Overlap geneMlf1ip, Ccdc111, Casp3
Upstream geneSorbs2, Pdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt, LOC667337, Acsl1
Downstream geneIrf2, Enpp6, Stox2, 4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080M21.bB6Ng01-080M21.g
ACCDH895836DH895837
length1,0651,105
definitionDH895836|Mus musculus domesticus DNA, BAC clone: B6Ng01-080M21, 5' end.DH895837|Mus musculus domesticus DNA, BAC clone: B6Ng01-080M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,653,568 - 47,654,627)(47,816,090 - 47,817,191)
sequence
gaattctgcctgccagtcatcttggaattcttcttagcacaaccctgtga
tcttcctgatggatcctgttaggagttggtttcaggcttccttaggaatt
gggtcgctcgcagcctccggccagccagggagtgtttctcagcgagtttg
cgctgctgtcctctcttaggtgatcccataggcatagttaaacttcacca
ccccagtgtgctgggtgctgctgcttcctgtactgggacctgcttggcct
gagattatgtattaatcttctctaagtcctaaataagtcaaaagcagttg
gtggtttgataatgttgtcgtcctaatccttaaatttcaaggaaaataat
ttttcctaaattaaagagttatattgtttgttttcttatttggtagaaaa
ctcagaagaaagtgcggccgtctcctggcaggaggaagagaccaaggcgc
ggacacacagacacaggtactgatggcactctgtggctcgtcacttgtac
agggtgtctcaggaagaaggctagtttaagttgtcttagttgtcgaaata
gcagacaggtttgttttgtgggggaggtgttgagatagggtctcgctgca
tagctctagctgttctggaactcaccgtgtagaccatctggccttgaact
cacagaggtccatttgcctctgcctccagagtgctgggactaaaggcata
caccattactctgacttaaaatgccacttgattaagaaattatggctttg
gaataacatttttaaatcattttgtcatgaaatttttaaaaatgaatatt
tatacatgcatacaatgtgctttaataaaatctaacccccattccctccc
ctctcctcctcacttgtccaaacttcagttcccagaacccacatcaggca
gtttaccacaattccaggatcagtgccctctctgggcttccacgggtacc
tgcgtacattcacatagactccatagacatcaataaaaagtaaagaactt
ctgaataaaaagatgggctttcaatgctgcagtctgtgcctctctacact
ctgctgtggggctga
gaattcactatgtagctgaggttcatctccaactttttatcttcctgcct
ccacctccagagttctggggttttgggtgcctgcctccacggcctgtcag
acttccctcttcttaacaaagaggtttacttcttacctgtttaatcctgc
tctgggctgggaagacagtctgttgatggaaaggacggagagaagataac
ggttgctattaccatctgccagtcacactccaagttcagatcattggaga
tgagaaagaaaacagccagccatgttcaagccaccatacgatagaagaga
gaaggaagtgtttggaccaagcagcccaagcctatgccatgggcactgat
gatggagacacatggggtgggtgggcctgattaaattcacactgtgtgcc
cagccatgtcagggtcaccaacttaatggacccatcattagacaggatat
tctctacttatctccattttatttgtcgtcacgtcttcccttgacttctc
agtgatgtgaagctggttgaattatggccttgtgcttcacaggacatacg
accaatgctggcacccttccatgagacgaccttataatggctatttcttc
cagactgagagcctggaggactcttgccactcactctgttatctctccca
gcatttacctctgatcacataaatgcttcttcctgtgtagatactttcgt
ttattgttaacttaagcatggtccacattgaaggtaagagaaaattaaaa
ttttatacaaacacagtgtgaacacctcggtggcaccatgcataaaaccc
aaaggagatactttgaaatgtcaaacactttcgatttgaatacattattt
atatcttttctttctggaacttttccttgtttggtccttataccacctac
tatgcagcctgatgatttccatatttagttggaaggcccttttttttcta
ttcaaaaggaatacttgattatagatttcattttcatcagcgtaactttg
ggatactttttgcagaataggttcaggaatttactcaggtacctttaatg
agttgctaccataaacctccatggtgtataaatgtaactcaaacatgcag
ccagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_47653568_47654627
seq2: B6Ng01-080M21.b_46_1110

seq1  GAATTCTGCCTGCCAGTCATCTTGGAATTCTTCTTAGCACAACCCTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTGCCAGTCATCTTGGAATTCTTCTTAGCACAACCCTGTGA  50

seq1  TCTTCCTGATGGATCCTGTTAGGAGTTGGTTTCAGGCTTCCTTAGGAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGATGGATCCTGTTAGGAGTTGGTTTCAGGCTTCCTTAGGAATT  100

seq1  GGGTCGCTCGCAGCCTCCGGCCAGCCAGGGAGTGTTTCTCAGCGAGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCGCTCGCAGCCTCCGGCCAGCCAGGGAGTGTTTCTCAGCGAGTTTG  150

seq1  CGCTGCTGTCCTCTCTTAGGTGATCCCATAGGCATAGTTAAACTTCACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCTGTCCTCTCTTAGGTGATCCCATAGGCATAGTTAAACTTCACCA  200

seq1  CCCCAGTGTGCTGGGTGCTGCTGCTTCCTGTACTGGGACCTGCTTGGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTGTGCTGGGTGCTGCTGCTTCCTGTACTGGGACCTGCTTGGCCT  250

seq1  GAGATTATGTATTAATCTTCTCTAAGTCCTAAATAAGTCAAAAGCAGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTATGTATTAATCTTCTCTAAGTCCTAAATAAGTCAAAAGCAGTTG  300

seq1  GTGGTTTGATAATGTTGTCGTCCTAATCCTTAAATTTCAAGGAAAATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTGATAATGTTGTCGTCCTAATCCTTAAATTTCAAGGAAAATAAT  350

seq1  TTTTCCTAAATTAAAGAGTTATATTGTTTGTTTTCTTATTTGGTAGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTAAATTAAAGAGTTATATTGTTTGTTTTCTTATTTGGTAGAAAA  400

seq1  CTCAGAAGAAAGTGCGGCCGTCTCCTGGCAGGAGGAAGAGACCAAGGCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAGAAAGTGCGGCCGTCTCCTGGCAGGAGGAAGAGACCAAGGCGC  450

seq1  GGACACACAGACACAGGTACTGATGGCACTCTGTGGCTCGTCACTTGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACACAGACACAGGTACTGATGGCACTCTGTGGCTCGTCACTTGTAC  500

seq1  AGGGTGTCTCAGGAAGAAGGCTAGTTTAAGTTGTCTTAGTTGTCGAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTCTCAGGAAGAAGGCTAGTTTAAGTTGTCTTAGTTGTCGAAATA  550

seq1  GCAGACAGGTTTGTTTTGTGGGGGAGGTGTTGAGATAGGGTCTCGCTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAGGTTTGTTTTGTGGGGGAGGTGTTGAGATAGGGTCTCGCTGCA  600

seq1  TAGCTCTAGCTGTTCTGGAACTCACCGTGTAGACCATCTGGCCTTGAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTAGCTGTTCTGGAACTCACCGTGTAGACCATCTGGCCTTGAACT  650

seq1  CACAGAGGTCCATTTGCCTCTGCCTCCAGAGTGCTGGGACTAAAGGCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGTCCATTTGCCTCTGCCTCCAGAGTGCTGGGACTAAAGGCATA  700

seq1  CACCATTACTCTGACTTAAAATGCCACTTGATTAAGAAATTATGGCTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTACTCTGACTTAAAATGCCACTTGATTAAGAAATTATGGCTTTG  750

seq1  GAATAACATTTTTAAATCATTTTGTCATGAAATTTTTAAAAATGAATATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAACATTTTTAAATCATTTTGTCATGAAATTTTTAAAAATGAATATT  800

seq1  TATACATGCATACAATGTGCTTTAATAAAATCTAACCCCCATTCCCTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATGCATACAATGTGCTTTAATAAAATCTAACCCCCATTCCCTCCC  850

seq1  CTCTCCTCCTCACTTGTCCAAACTTCAGTTCCCAGAACCCACATCAGGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCCTCACTTGTCCAAACTTCAGTTCCCAGAACCCACATCAGGCA  900

seq1  GTTTACCACAATTCCAGGATCAGTGCCCTCTCCTGGCCTTCACGGGTACC  950
      ||||||||||||||||||||||||||||||||  ||| | ||||||||||
seq2  GTTTACCACAATTCCAGGATCAGTGCCCTCTCTGGGCTTCCACGGGTACC  950

seq1  TGCGTACATTCACATAGACT-CATAGACATCA--TAAAAGTAAAGAACTT  997
      |||||||||||||||||||| |||||||||||   |||||||||||||||
seq2  TGCGTACATTCACATAGACTCCATAGACATCAATAAAAAGTAAAGAACTT  1000

seq1  CTG-ATAAAAAGATGGGC-TTCCATGCTGCAGTCTGTG-CTCTCTACACT  1044
      ||| |||||||||||||| ||| ||||||||||||||| |||||||||||
seq2  CTGAATAAAAAGATGGGCTTTCAATGCTGCAGTCTGTGCCTCTCTACACT  1050

seq1  CTGCTGTGGGGGCTGA  1060
      ||||||| ||||||||
seq2  CTGCTGT-GGGGCTGA  1065

seq1: chr8_47816090_47817191
seq2: B6Ng01-080M21.g_72_1176 (reverse)

seq1  CCTGCCTGCATGTCTGAGTACCATTTATACACCCATGGA-GTTTATGTTA  49
      |||| |||||||| |||||  |||||||||| ||||||| ||||||| ||
seq2  CCTGGCTGCATGTTTGAGTTACATTTATACA-CCATGGAGGTTTATGGTA  49

seq1  -CAACTCATAAAAGTACCCTGGAGTAAATTCCTGAAACTA-TCTGCAAAA  97
       |||||||| ||||   ||| ||||||||||||||| ||| |||||||||
seq2  GCAACTCATTAAAGGTACCT-GAGTAAATTCCTGAACCTATTCTGCAAAA  98

seq1  AGTATCCCAAAGTTTACGCTGATGAAAATGAAATCTATAATCAAGTATTC  147
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGTATCCCAAAG-TTACGCTGATGAAAATGAAATCTATAATCAAGTATTC  147

seq1  CTTTTGAATAGAAAAAAAAAGGGCCTTCC-ACTAAATATGGAAATCATCA  196
      ||||||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  CTTTTGAATAG-AAAAAAAAGGGCCTTCCAACTAAATATGGAAATCATCA  196

seq1  GGCTGCATAGTAGGTGGTATAAGGACCAAACA--GGAAAGTTCCAGAAAG  244
      ||||||||||||||||||||||||||||||||  | ||||||||||||||
seq2  GGCTGCATAGTAGGTGGTATAAGGACCAAACAAGGAAAAGTTCCAGAAAG  246

seq1  -AAAGATATAAATAATGTATTCAAATCGAAAGTGTTTGACATTTCAAAGT  293
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATATAAATAATGTATTCAAATCGAAAGTGTTTGACATTTCAAAGT  296

seq1  ATCTCCTTTGGGTTTTATGCATGGTGCCACCGAGGTGTTCACACTGTGTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTTTGGGTTTTATGCATGGTGCCACCGAGGTGTTCACACTGTGTT  346

seq1  TGTATAAAATTTTAATTTTCTCTTACCTTCAATGTGGACCATGCTTAAGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAAATTTTAATTTTCTCTTACCTTCAATGTGGACCATGCTTAAGT  396

seq1  TAACAATAAACGAAAGTATCTACACAGGAAGAAGCATTTATGTGATCAGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATAAACGAAAGTATCTACACAGGAAGAAGCATTTATGTGATCAGA  446

seq1  GGTAAATGCTGGGAGAGATAACAGAGTGAGTGGCAAGAGTCCTCCAGGCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATGCTGGGAGAGATAACAGAGTGAGTGGCAAGAGTCCTCCAGGCT  496

seq1  CTCAGTCTGGAAGAAATAGCCATTATAAGGTCGTCTCATGGAAGGGTGCC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCTGGAAGAAATAGCCATTATAAGGTCGTCTCATGGAAGGGTGCC  546

seq1  AGCATTGGTCGTATGTCCTGTGAAGCACAAGGCCATAATTCAACCAGCTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGGTCGTATGTCCTGTGAAGCACAAGGCCATAATTCAACCAGCTT  596

seq1  CACATCACTGAGAAGTCAAGGGAAGACGTGACGACAAATAAAATGGAGAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCACTGAGAAGTCAAGGGAAGACGTGACGACAAATAAAATGGAGAT  646

seq1  AAGTAGAGAATATCCTGTCTAATGATGGGTCCATTAAGTTGGTGACCCTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAGAATATCCTGTCTAATGATGGGTCCATTAAGTTGGTGACCCTG  696

seq1  ACATGGCTGGGCACACAGTGTGAATTTAATCAGGCCCACCCACCCCATGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCTGGGCACACAGTGTGAATTTAATCAGGCCCACCCACCCCATGT  746

seq1  GTCTCCATCATCAGTGCCCATGGCATAGGCTTGGGCTGCTTGGTCCAAAC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATCATCAGTGCCCATGGCATAGGCTTGGGCTGCTTGGTCCAAAC  796

seq1  ACTTCCTTCTCTCTTCTATCGTATGGTGGCTTGAACATGGCTGGCTGTTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTTCTCTCTTCTATCGTATGGTGGCTTGAACATGGCTGGCTGTTT  846

seq1  TCTTTCTCATCTCCAATGATCTGAACTTGGAGTGTGACTGGCAGATGGTA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCATCTCCAATGATCTGAACTTGGAGTGTGACTGGCAGATGGTA  896

seq1  ATAGCAACCGTTATCTTCTCTCCGTCCTTTCCATCAACAGACTGTCTTCC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAACCGTTATCTTCTCTCCGTCCTTTCCATCAACAGACTGTCTTCC  946

seq1  CAGCCCAGAGCAGGATTAAACAGGTAAGAAGTAAACCTCTTTGTTAAGAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAGAGCAGGATTAAACAGGTAAGAAGTAAACCTCTTTGTTAAGAA  996

seq1  GAGGGAAGTCTGACAGGCCGTGGAGGCAGGCACCCAAAACCCCAGAACTC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAGTCTGACAGGCCGTGGAGGCAGGCACCCAAAACCCCAGAACTC  1046

seq1  TGGAGGTGGAGGCAGGAAGATAAAAAGTTGGAGATGAACCTCAGCTACAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTGGAGGCAGGAAGATAAAAAGTTGGAGATGAACCTCAGCTACAT  1096

seq1  AGTGAATTC  1102
      |||||||||
seq2  AGTGAATTC  1105