BAC Information

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BAC

Clone NameB6Ng01-081I05
Chromosome8 (Build37)
Map Location 107,150,299 - 107,288,465
singlet/doubletdoublet
Overlap geneRrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050
Upstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16
Downstream gene4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081I05.bB6Ng01-081I05.g
ACCDH896344DH896345
length720948
definitionDH896344|Mus musculus domesticus DNA, BAC clone: B6Ng01-081I05, 5' end.DH896345|Mus musculus domesticus DNA, BAC clone: B6Ng01-081I05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,150,299 - 107,150,986)(107,287,514 - 107,288,465)
sequence
cacctttatttgtgtgaagagggatccgcgggattcttgattcctggcat
tttcctttttttttttcagactgtgatcaatcaagggtaactaaaaccac
acactcacacacacacacacacacacacacacacacacacacacacacag
gtaaactcctttgctgtcatccatgtcaagaaagatgaagggggcgtgag
gagatgactcagtaaagattaaggacctgggttcagattcccatgtaaaa
gtcaggtaaagttcttggaatcccagccccggggaagtggagctaggagg
atccaggatagctggttagccagtttatccaattgctaagctacagattc
gatgagaggccctgtttcaaagaatactgtgggaagtgattggggaagat
gcctggcagccacctttagtctccaaatacacaccagtctgtgttcatgc
aaacacagctgtagcacacacagagaaacagatacagagcaaaggaagga
aagagggagagagaaagagtctcaaaggagagctggcctggtgggaaggc
ctataatctcagctacccaggaggccaagatttgaggattgcaagttcta
ggccaacctgggcaatttagagagagcctatcttaaaacaaattggcaag
ccgggcgtggtggcgcactcctttaatcccagcactcgggaggcagaggc
agggtggatttctgagctcg
gaattcctggtgctgcagacatgacctcataaggtaccagggtaggaggg
agaagtcctaattcttctaaactcagaaagaaatctctgggttttggaca
cacctcgaacccactcttactttaggatggctcccagagtcccacggata
cctggccacacacttaaagaagtcatagagaagaagagagagaggatgag
agattaagcaagcaaggctaaaagggcctagctccagtaaactctaaaag
gagataggacattgtggggctcacaaatctgcagttatggaagcacttat
cgagtgggtctaatcaaaggtggcccggcttgataaagagtcacatgcag
agaatttgtgatgaataagaaaaacacacaagtatagaggctttgtgaat
attagaatcaactcaggtttcaatatgtgttgggaaaacccgaagctgac
ttgatcagcagccagccccacacaacactcttcacaaaggacactacata
tctttgtgcatattttcagatctatttaactcctgaatcttctggggcag
agtcttggtccagaactgcagccttcttgccttcagtgctttggcccaca
gcagtctgaatgtccagctgtagatacttctcatcttggttcagcatggg
ccagtagggtagacccttcactgttggggttcctgtggataagccaccaa
gaaaagaagggtgaggtcactctggtcccatgttttgggtcatggcaatg
aaacaaggaagacagtggttaaagggactagtgagaaaggagtcgtgata
cgcacatacaagtgtcacttgctagtttctgcttcatgtgggggaagact
actggagctcttttatgtctccctctatgaggcaagatctaagagcagta
cacacactataccccaccagctcagaaccggagatgacagtacttgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_107150299_107150986
seq2: B6Ng01-081I05.b_33_720

seq1  ATTCTTGATTCCTGGCATTTTCCTTTTCAAATTTTCAGACTGTGATCAAT  50
      |||||||||||||||||||||||||||    |||||||||||||||||||
seq2  ATTCTTGATTCCTGGCATTTTCCTTTT-TTTTTTTCAGACTGTGATCAAT  49

seq1  CAAGGGTAACTAAAACCACACACACACACACACACACACACACACACACA  100
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAAGGGTAACTAAAACCACACACTCACACACACACACACACACACACACA  99

seq1  CACACACACACACACACAGGTAAACTCCTTTGCTGTCATCCATGTCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACAGGTAAACTCCTTTGCTGTCATCCATGTCAAGA  149

seq1  AAGATGAAGGGGGCGTGAGGAGATGACTCAGTAAAGATTAAGGACCTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAAGGGGGCGTGAGGAGATGACTCAGTAAAGATTAAGGACCTGGG  199

seq1  TTCAGATTCCCATGTAAAAGTCAGGTAAAGTTCTTGGAATCCCAGCCCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATTCCCATGTAAAAGTCAGGTAAAGTTCTTGGAATCCCAGCCCCG  249

seq1  GGGAAGTGGAGCTAGGAGGATCCAGGATAGCTGGTTAGCCAGTTTATCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTGGAGCTAGGAGGATCCAGGATAGCTGGTTAGCCAGTTTATCCA  299

seq1  ATTGCTAAGCTACAGATTCGATGAGAGGCCCTGTTTCAAAGAATACTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTAAGCTACAGATTCGATGAGAGGCCCTGTTTCAAAGAATACTGTG  349

seq1  GGAAGTGATTGGGGAAGATGCCTGGCAGCCACCTTTAGTCTCCAAATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGATTGGGGAAGATGCCTGGCAGCCACCTTTAGTCTCCAAATACA  399

seq1  CACCAGTCTGTGTTCATGCAAACACAGCTGTAGCACACACAGAGAAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTCTGTGTTCATGCAAACACAGCTGTAGCACACACAGAGAAACAG  449

seq1  ATACAGAGCAAAGGAAGGAAAGAGGGAGAGAGAAAGAGTCTCAAAGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGCAAAGGAAGGAAAGAGGGAGAGAGAAAGAGTCTCAAAGGAGA  499

seq1  GCTGGCCTGGTGGGAAGGCCTATAATCTCAGCTACCCAGGAGGCCAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTGGTGGGAAGGCCTATAATCTCAGCTACCCAGGAGGCCAAGAT  549

seq1  TTGAGGATTGCAAGTTCTAGGCCAACCTGGGCAATTTAGAGAGAGCCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGATTGCAAGTTCTAGGCCAACCTGGGCAATTTAGAGAGAGCCTAT  599

seq1  CTTAAAACAAATTGGCAAGCCGGGCGTGGTGGCGCACTCCTTTAATCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAACAAATTGGCAAGCCGGGCGTGGTGGCGCACTCCTTTAATCCCA  649

seq1  GCACTCGGGAGGCAGAGGCA-GGTGGATTTCTGAGCTCG  688
      |||||||||||||||||||| ||||||||||||||||||
seq2  GCACTCGGGAGGCAGAGGCAGGGTGGATTTCTGAGCTCG  688

seq1: chr8_107287514_107288465
seq2: B6Ng01-081I05.g_70_1017 (reverse)

seq1  GTCAGGTACTGGTCATCTCACGGTTTCTGAGCTGGTGGGGTATAGTGTTG  50
      |||| ||||| |||||||| ||| ||||||||||||||||||||||| ||
seq2  GTCAAGTACT-GTCATCTC-CGG-TTCTGAGCTGGTGGGGTATAGTG-TG  46

seq1  TGGTACTGCTCTTTAGATCTTGCCTCATAGAGGGAGACATAAAAGAGCTC  100
      | ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  T-GTACTGCTC-TTAGATCTTGCCTCATAGAGGGAGACATAAAAGAGCTC  94

seq1  ATGTAGTCTTCCCCCACATGAAGCAGAAACTAGCAAGTGACACTTGTATG  150
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTCTTCCCCCACATGAAGCAGAAACTAGCAAGTGACACTTGTATG  144

seq1  TGCGTATCACGACTCCTTTCTCACTAGTCCCCTTAACCACTGTCTTCCTT  200
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGCGTATCACGACTCCTTTCTCACTAGTCCCTTTAACCACTGTCTTCCTT  194

seq1  GTTTCATTGCCATGACCCAAAACATGGGACCAGAGTGACCTCACCCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATTGCCATGACCCAAAACATGGGACCAGAGTGACCTCACCCTTCT  244

seq1  TTTCTTGGTGGCTTATCCACAGGAACCCCAACAGTGAA-GGTCTACCCTA  299
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTCTTGGTGGCTTATCCACAGGAACCCCAACAGTGAAGGGTCTACCCTA  294

seq1  CTGGCCCATGCTGAACCAAGATGAGAAGTATCTACAGCTGGACATTCAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCATGCTGAACCAAGATGAGAAGTATCTACAGCTGGACATTCAGA  344

seq1  CTGCTGTGGGCC-AAGCACTGAAGGCAAGAAGGCTGCAGTTCTGGACCAA  398
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTGGGCCAAAGCACTGAAGGCAAGAAGGCTGCAGTTCTGGACCAA  394

seq1  GACTCTGCCCCAGAAGATTCAGGAGTTAAATAGATCTGAAAATATGCACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGCCCCAGAAGATTCAGGAGTTAAATAGATCTGAAAATATGCACA  444

seq1  AAGATATGTAGTGTCCTTTGTGAAGAGTGTTGTGTGGGGCTGGCTGCTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATGTAGTGTCCTTTGTGAAGAGTGTTGTGTGGGGCTGGCTGCTGA  494

seq1  TCAAGTCAGCTTCGGGTTTTCCCAACACATATTGAAACCTGAGTTGATTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCAGCTTCGGGTTTTCCCAACACATATTGAAACCTGAGTTGATTC  544

seq1  TAATATTCACAAAGCCTCTATACTTGTGTGTTTTTCTTATTCATCACAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTCACAAAGCCTCTATACTTGTGTGTTTTTCTTATTCATCACAAA  594

seq1  TTCTCTGCATGTGACTCTTTATCAAGCCGGGCCACCTTTGATTAGACCCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGCATGTGACTCTTTATCAAGCCGGGCCACCTTTGATTAGACCCA  644

seq1  CTCGATAAGTGCTTCCATAACTGCAGATTTGTGAGCCCCACAATGTCCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGATAAGTGCTTCCATAACTGCAGATTTGTGAGCCCCACAATGTCCTA  694

seq1  TCTCCTTTTAGAGTTTACTGGAGCTAGGCCCTTTTAGCCTTGCTTGCTTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTTAGAGTTTACTGGAGCTAGGCCCTTTTAGCCTTGCTTGCTTA  744

seq1  ATCTCTCATCCTCTCTCTCTTCTTCTCTATGACTTCTTTAAGTGTGTGGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCATCCTCTCTCTCTTCTTCTCTATGACTTCTTTAAGTGTGTGGC  794

seq1  CAGGTATCCGTGGGACTCTGGGAGCCATCCTAAAGTAAGAGTGGGTTCGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATCCGTGGGACTCTGGGAGCCATCCTAAAGTAAGAGTGGGTTCGA  844

seq1  GGTGTGTCCAAAACCCAGAGATTTCTTTCTGAGTTTAGAAGAATTAGGAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTCCAAAACCCAGAGATTTCTTTCTGAGTTTAGAAGAATTAGGAC  894

seq1  TTCTCCCTCCTACCCTGGTACCTTATGAGGTCATGTCTGCAGCACCAGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCTCCTACCCTGGTACCTTATGAGGTCATGTCTGCAGCACCAGGA  944

seq1  ATTC  952
      ||||
seq2  ATTC  948