BAC Information

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BAC

Clone NameB6Ng01-082C04
Chromosome8 (Build37)
Map Location 112,146,291 - 112,273,328
singlet/doubletdoublet
Overlap genePkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e
Upstream geneAtbf1, 4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh
Downstream geneLOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398, Vac14, BC060632, 2010004A03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082C04.bB6Ng01-082C04.g
ACCDH896782DH896783
length1,1441,086
definitionDH896782|Mus musculus domesticus DNA, BAC clone: B6Ng01-082C04, 5' end.DH896783|Mus musculus domesticus DNA, BAC clone: B6Ng01-082C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,146,291 - 112,147,450)(112,272,220 - 112,273,328)
sequence
gaattcacatctcagcgttttccaagctgacagccgtagaaacgctgcca
gaaggagggacagcagggcctgagctgccgcatcagctgcatctgcccct
ctcagcgctcccgttcttttaccccttcctgtcttgtctgacctcatcat
gggagtcagactctgactgctgacactgcacatgcccctcaaccccactg
ctcaatccatcccatcccccctctttcatttctggcctcctacttcctcc
tcaaacacacccagcaagctttggccccctcagatgtcctcagacatgtc
ggcagagcccgcttttcctcctgtacatttgagggctgctcagaagcaca
acctccctcccccacctgcttgtctgaatgcccccttcccagcgtggatt
cagtacctgccagaatgtgcctgttcatctccacttccatggaggcccta
ggaggccagacactagactcattttgttcaatactcccagttctcctgaa
cacagcttagcacatattaggtgtttagtaagttattaaatgatgagcaa
cgaacgcgttgtcctcagtgtgtgaaattgtgttctctcggaggtgtttg
acggcagtctgcagtctgtgtcctaaagagcatgagggtcccaaagggaa
cacagaacacggccccatgctactgtgctcgataagatttagcctcttcc
tttacatgttcttctcttttagtttgagacattgtgctttcccattgacc
cagcttcttcagcacctccaaaagccacacacaggatgacaatcacatcc
ctaactggaaagccacaggtgacatcagacacacttgcatccagcagccc
accacaggggacatcagacacacctgcatccagcagcccaccacaggtga
catcagccacatctgcatctagcagcccaccacaggggacatcagacaca
cttgcatccagcagcccaccacagtgacatcagcacatctgcatctagca
gccaccacagggacatcagacccacctgcatcagcagccaccacaggtga
ctcagccaaatctgcatctagcagcctaccccaggggacatcgaccacct
gcatcagcagccaccacaggtgctagcacactgcatctagcagc
gaattcttggtggctcaacaatggcctgaatgtattagtttctttgtggc
ctaactgcttatatatgactcaaatattttgtgctggctagcagcttaaa
tttgatccacctggcggaaggagagaaccaactctaagttgtcttccacc
ttcacattgtacagctatacacacacaccacaccacaccacaccacacca
caccacaccacaccacatcacaccacccacacacgcacacacacacatgc
atactcaagcacacacacacacacatcattgtaatactgtttgtttgttt
gtttgtttgaaacagagtttttctgtgtagtcctggttgtcctaaaactc
actatatacgccaggttggccttgaactcacagaatcatctgcctcctga
gtgctgagtgctggaattaaagacatgcaccaccatacctaggtttggtg
ataattattttagggttagatttcattcagtatattctaattatcagtgg
gattcttttggttttgtttggtttttgagataggtcaaaactaccatgct
gccttgtctggactcaaactcatatatagcccaagttgatcttgaactag
tgacaatcctcctgcctcagccttaagtactgtaattgtaggagtgggcc
agcatccatgacttcatcagtgtttactgtaccctttgagagttctgaag
gttgttttggacaaaaacatccaaagtcttaggcaaatatatgagcatac
aggtgaaagggggagagccactcttctcatgggtagattagtcagagtga
aaattataaaacttcttaaataactctttattaatttgaagggaactctc
ctctgcacctggagaggtcatatgacctttaaagcacaaggagaggatgt
ttcatagagaagtagatagacagaacttgcaggagatatatatatatgca
cccgggcatgaaaaagctttggagaaaccacagtgtaatgccagcacaaa
tgccactagaaatctcagagtgggtcttgattagtgtttctgttactgtt
cacagttctttcccaaatgaccttacatctgagacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_112146291_112147450
seq2: B6Ng01-082C04.b_47_1190

seq1  GAATTCACATCTCAGCGTTTTCCAAGCTGACAGCCGTAGAAACGCTGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATCTCAGCGTTTTCCAAGCTGACAGCCGTAGAAACGCTGCCA  50

seq1  GAAGGAGGGACAGCAGGGCCTGAGCTGCCGCATCAGCTGCATCTGCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGGGACAGCAGGGCCTGAGCTGCCGCATCAGCTGCATCTGCCCCT  100

seq1  CTCAGCGCTCCCGTTCTTTTACCCCTTCCTGTCTTGTCTGACCTCATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCGCTCCCGTTCTTTTACCCCTTCCTGTCTTGTCTGACCTCATCAT  150

seq1  GGGAGTCAGACTCTGACTGCTGACACTGCACATGCCCCTCAACCCCACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTCAGACTCTGACTGCTGACACTGCACATGCCCCTCAACCCCACTG  200

seq1  CTCAATCCATCCCATCCCCCCTCTTTCATTTCTGGCCTCCTACTTCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATCCATCCCATCCCCCCTCTTTCATTTCTGGCCTCCTACTTCCTCC  250

seq1  TCAAACACACCCAGCAAGCTTTGGCCCCCTCAGATGTCCTCAGACATGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACACACCCAGCAAGCTTTGGCCCCCTCAGATGTCCTCAGACATGTC  300

seq1  GGCAGAGCCCGCTTTTCCTCCTGTACATTTGAGGGCTGCTCAGAAGCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGCCCGCTTTTCCTCCTGTACATTTGAGGGCTGCTCAGAAGCACA  350

seq1  ACCTCCCTCCCCCACCTGCTTGTCTGAATGCCCCCTTCCCAGCGTGGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCTCCCCCACCTGCTTGTCTGAATGCCCCCTTCCCAGCGTGGATT  400

seq1  CAGTACCTGCCAGAATGTGCCTGTTCATCTCCACTTCCATGGAGGCCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCTGCCAGAATGTGCCTGTTCATCTCCACTTCCATGGAGGCCCTA  450

seq1  GGAGGCCAGACACTAGACTCATTTTGTTCAATACTCCCAGTTCTCCTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCAGACACTAGACTCATTTTGTTCAATACTCCCAGTTCTCCTGAA  500

seq1  CACAGCTTAGCACATATTAGGTGTTTAGTAAGTTATTAAATGATGAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTTAGCACATATTAGGTGTTTAGTAAGTTATTAAATGATGAGCAA  550

seq1  CGAACGCGTTGTCCTCAGTGTGTGAAATTGTGTTCTCTCGGAGGTGTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACGCGTTGTCCTCAGTGTGTGAAATTGTGTTCTCTCGGAGGTGTTTG  600

seq1  ACGGCAGTCTGCAGTCTGTGTCCTAAAGAGCATGAGGGTCCCAAAGGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCAGTCTGCAGTCTGTGTCCTAAAGAGCATGAGGGTCCCAAAGGGAA  650

seq1  CACAGAACACGGCCCCATGCTACTGTGCTCGATAAGATTTAGCCTCTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAACACGGCCCCATGCTACTGTGCTCGATAAGATTTAGCCTCTTCC  700

seq1  TTTACATGTTCTTCTCTTTTAGTTTGAGACATTGTGCTTTCCCATTGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATGTTCTTCTCTTTTAGTTTGAGACATTGTGCTTTCCCATTGACC  750

seq1  CAGCTTCTTCAGCACCTCCAAAAGCCACACACAGGATGACAATCACATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCTTCAGCACCTCCAAAAGCCACACACAGGATGACAATCACATCC  800

seq1  CTAACTGGAAGGCCACAGGTGACATCAGACACACTTGCATCCAGCAGCCC  850
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGGAAAGCCACAGGTGACATCAGACACACTTGCATCCAGCAGCCC  850

seq1  ACCACAGGGGACATCAGACACACCTGCATCCAGCAGCCCACCACAGGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGGGGACATCAGACACACCTGCATCCAGCAGCCCACCACAGGTGA  900

seq1  CATCAGCCACATCTGCATCTAGCAGCCCACCACAGGGGACATCAGACACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCCACATCTGCATCTAGCAGCCCACCACAGGGGACATCAGACACA  950

seq1  CCTGCATCCAGCAGCCCACCACAGGTGACATCAGCCACATCTGCATCTAG  1000
      | ||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  CTTGCATCCAGCAGCCCACCACA-GTGACATCAG-CACATCTGCATCTAG  998

seq1  CAGCCCACCACAGGGGACATCAGACACACCTGCATCCAGCAGCCCACCAC  1050
      ||| |||||||| |||||||||||| ||||||||| |||||| |||||||
seq2  CAG-CCACCACA-GGGACATCAGACCCACCTGCAT-CAGCAG-CCACCAC  1044

seq1  AGGTGACATCAGCCACATCTGCATCTAGCAGCCCACCACAGGGGACATCA  1100
      ||||||| ||||||| ||||||||||||||||| ||| ||||||||||| 
seq2  AGGTGAC-TCAGCCAAATCTGCATCTAGCAGCCTACCCCAGGGGACATC-  1092

seq1  GACACACCTGCATCCAGCAGCCCACCACAGGTGACATCAGCCACATCTGC  1150
      ||| ||||||||| |||||| ||||||||||||    |   |||| ||||
seq2  GAC-CACCTGCAT-CAGCAG-CCACCACAGGTG----CTAGCACA-CTGC  1134

seq1  ATCTAGCAGC  1160
      ||||||||||
seq2  ATCTAGCAGC  1144

seq1: chr8_112272220_112273328
seq2: B6Ng01-082C04.g_66_1151 (reverse)

seq1  GGTCTCAGGATGTAAAGTGTCATTTTGGGAAAGGAACTGGTTGGACACCA  50
      ||||||| |||||||   |||| ||||||||| ||||||  ||   | ||
seq2  GGTCTCA-GATGTAA--GGTCA-TTTGGGAAA-GAACTG--TG---AACA  40

seq1  GTAACAGAAACAACTAATCACAGACCCACTCTGAGATGTCTAGTGGGCAT  100
      ||||||||||| |||||||| |||||||||||||||| |||||| |||||
seq2  GTAACAGAAAC-ACTAATCA-AGACCCACTCTGAGATTTCTAGT-GGCAT  87

seq1  TTGTGCCTGGCATTACACTGTTGGTTTTCTCCAAAGCTTTTTTCATTGCC  150
      ||||| |||||||||||||||  | |||||||||||| ||||||| ||||
seq2  TTGTG-CTGGCATTACACTGT--GGTTTCTCCAAAGC-TTTTTCA-TGCC  132

seq1  CGGGTGCATATATATATATCTCCTGCAAGTTCTGTCTTATCTACTTCTCT  200
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CGGGTGCATATATATATATCTCCTGCAAGTTCTGTC-TATCTACTTCTCT  181

seq1  ATGAAACATCCTCTCCTTGTGCTTTTAAAGGTCATATGACCTCTCCAGGT  250
      |||||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  ATGAAACATCCTCTCCTTGTGC-TTTAAAGGTCATATGACCTCTCCAGG-  229

seq1  TGCAGAGGAGAGTTCCCTTTCAAATTAATTAAGAGTTTATTTAAGAAGTT  300
      ||||||||||||||||| ||||||||||| ||||| ||||||||||||||
seq2  TGCAGAGGAGAGTTCCC-TTCAAATTAATAAAGAG-TTATTTAAGAAGTT  277

seq1  TTATAATTTTCACTCTGACTAATCTACCCATGAGAAGAGTGGCTCTCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTTTCACTCTGACTAATCTACCCATGAGAAGAGTGGCTCTCCCC  327

seq1  CTTTCACCTGTATGCTCATATATTTGCCTAAGACTTTGGATGTTTTTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACCTGTATGCTCATATATTTGCCTAAGACTTTGGATGTTTTTGTC  377

seq1  CAAAACAACCTTCAGAACTCTCAAAGGGTACAGTAAACACTGATGAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAACCTTCAGAACTCTCAAAGGGTACAGTAAACACTGATGAAGTC  427

seq1  ATGGATGCTGGCCCACTCCTACAATTACAGTACTTAAGGCTGAGGCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGCTGGCCCACTCCTACAATTACAGTACTTAAGGCTGAGGCAGGA  477

seq1  GGATTGTCACTAGTTCAAGATCAACTTGGGCTATATATGAGTTTGAGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTCACTAGTTCAAGATCAACTTGGGCTATATATGAGTTTGAGTCC  527

seq1  AGACAAGGCAGCATGGTAGTTTTGACCTATCTCAAAAACCAAACAAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGGCAGCATGGTAGTTTTGACCTATCTCAAAAACCAAACAAAACC  577

seq1  AAAAGAATCCCACTGATAATTAGAATATACTGAATGAAATCTAACCCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATCCCACTGATAATTAGAATATACTGAATGAAATCTAACCCTAA  627

seq1  AATAATTATCACCAAACCTAGGTATGGTGGTGCATGTCTTTAATTCCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTATCACCAAACCTAGGTATGGTGGTGCATGTCTTTAATTCCAGC  677

seq1  ACTCAGCACTCAGGAGGCAGATGATTCTGTGAGTTCAAGGCCAACCTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCACTCAGGAGGCAGATGATTCTGTGAGTTCAAGGCCAACCTGGC  727

seq1  GTATATAGTGAGTTTTAGGACAACCAGGACTACACAGAAAAACTCTGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATAGTGAGTTTTAGGACAACCAGGACTACACAGAAAAACTCTGTTT  777

seq1  CAAACAAACAAACAAACAAACAGTATTACAATGATGTGTGTGTGTGTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAACAAACAAACAGTATTACAATGATGTGTGTGTGTGTGTG  827

seq1  CTTGAGTATGCATGTGTGTGTGTGCGTGTGTGGGTGGTGTGATGTGGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTATGCATGTGTGTGTGTGCGTGTGTGGGTGGTGTGATGTGGTGT  877

seq1  GGTGTGGTGTGGTGTGGTGTGGTGTGGTGTGGTGTGTGTGTATAGCTGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGTGTGGTGTGGTGTGGTGTGGTGTGGTGTGTGTGTATAGCTGTA  927

seq1  CAATGTGAAGGTGGAAGACAACTTAGAGTTGGTTCTCTCCTTCCGCCAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGAAGGTGGAAGACAACTTAGAGTTGGTTCTCTCCTTCCGCCAGG  977

seq1  TGGATCAAATTTAAGCTGCTAGCCAGCACAAAATATTTGAGTCATATATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCAAATTTAAGCTGCTAGCCAGCACAAAATATTTGAGTCATATATA  1027

seq1  AGCAGTTAGGCCACAAAGAAACTAATACATTCAGGCCATTGTTGAGCCAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTAGGCCACAAAGAAACTAATACATTCAGGCCATTGTTGAGCCAC  1077

seq1  CAAGAATTC  1109
      |||||||||
seq2  CAAGAATTC  1086