BAC Information

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BAC

Clone NameB6Ng01-083K12
Chromosome8 (Build37)
Map Location 11,201,046 - 11,342,712
singlet/doubletdoublet
Overlap geneCol4a1, Col4a2
Upstream geneMyo16, LOC100040008, LOC384782, LOC100040507, LOC665306, Irs2
Downstream geneRab20, 0710008K08Rik, Cars2, Ing1, Ankrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik, LOC100040155, LOC100040175
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083K12.bB6Ng01-083K12.g
ACCDH897859DH897860
length1,1271,072
definitionDH897859|Mus musculus domesticus DNA, BAC clone: B6Ng01-083K12, 5' end.DH897860|Mus musculus domesticus DNA, BAC clone: B6Ng01-083K12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,341,565 - 11,342,712)(11,201,046 - 11,202,123)
sequence
gaattctgctcgacggacttatctagggaggcccagtgattgtcccgtct
ccctttcacaggacagggattccagacactgatcaccaacagtccccttt
gggtcctattctcttggcccccacaccccttgcagaaggcttggcttatt
taaattctcattggatgcatccctagattgtagtatcaaccaatgtatca
agttggccctgggttggcttagaccaagttttgtctgctgatccactggg
gggcttgttctgagtgttcatctgcacacatgttcaggaatgagcctgtg
ttgagaagttctacaccagggcagtgaactgtcaggagctatttctgtct
actctactgaactagtccatgcacacaggtgaatttccagccttgtatac
tcaaagaggaacatatagatgggacccctgggcctccagccttctggggg
tctttgccctgcctggggtgtccatttggtccatctcatggcaagggacg
cagttggctgtgaatcaggccacatttggaggaatgtatgactgcccaat
agcccttcgagaaacaaaccctgtccttcactttcctcatttacatggca
catagaatctgtcatcgtgtcttgaggggaggagactgaaaggagatgaa
cccaagagagtgtggggtcagggagggctgaggctggaggcttctctgtt
caagcttgttcattccacgtttattcctacccaccgagaggcggggccag
gccatcccctgcccctcacagaggggcggggtcagactgtcccttgtccg
cagctcacagcagtgagattttcatccaccaagagtctactgttcatgaa
gacaggaggatgttttaagtcttcatccaatggcttgcatctagcatgca
tgagtctataaccagctaatgaaattacatgaggaagcactatctccatc
ttagttccacatactatttttgtctctggatgagatttggagaaacactc
agctgtgatttatctctaataaataggtccctggttgttgtttcttagaa
ggaatctggattaggcatggttgggcactactgctgactgtcctaacata
ggtcacttacaagcaagggtcttttgg
gaattcctcacggcagcctccaaaacagagaagacagagaggattgtctg
caggagagagtggccatgtctgggcaggagcagtaagaagctcctcctgc
cccatcagccaacatgctcctgaccattggaggtggaccaaaataacttc
aacaaagccagcatctctgggctcattgctctcaaatgaatcttagaaat
gggaagggacaagaaaggaaagacttgcctattatttcagtgatatttgt
gctgaaagaaacgtcttttgttaagttccttagttcacatatcctgcaca
ccttatgtaaatgctacagagaggagccacacagccctccccgctggcta
ttaaggatacaatgtttcacaagccttttgaagatttcagctgctttcta
taacattttagcacattcatctacaaatggcaaatgacctcttttctttc
tcagctccccagcaaatggaagaatggagcctatcacctcggatcacctt
tgaaaatcatccgggtcatctgccctctcagaacagactcctatttggtg
ggttataggaaacaaaagagaaagggctgccaggaggccagagccctcca
tgtctaactcacttgaacatctcgcttctctctatggtggcgagccaaaa
gctgtaagcatttgcgtagtaattgcacgttcctctgccgtggcactcga
tgaatggggcgcttctaaactcttccagacaggacccgggggatgcgagg
gcttggccggaaccttcagcaccagcgctggtgtgctgtgggacaagcat
aaggcatgagtctgaggttttatcacccaaacccaaagagagattcatcg
tccctaagaaaggagccaggatgcctcctcggaaggtttcaagtccctcc
tagtcatcccaggctcacagactttgagccaaaaaaaaaaaaaaaaactg
ctcaacagccatggtagtccaccatcaggtctgctggccaggctgggaca
ctcaggctctacgcattccagaaaccagaaacagcctctccactgagagg
ggagcacccagctttctagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_11341565_11342712
seq2: B6Ng01-083K12.b_47_1173 (reverse)

seq1  CCAAAAGACCCTGGCTTGTAAGTTGACCTTAGTTAGGGACAAGGTTCAGC  50
      |||||||||||| ||||||||| ||||||  |||| |||||    |||||
seq2  CCAAAAGACCCTTGCTTGTAAG-TGACCTATGTTA-GGACA---GTCAGC  45

seq1  AGTTAAGTTGCCCAAACCATGCCTAATCCAGATTCCTTTCTTAAAGAAAC  100
      |||  || ||||| |||||||||||||||||||||| ||||  |||||||
seq2  AGT--AG-TGCCC-AACCATGCCTAATCCAGATTCC-TTCT--AAGAAAC  88

seq1  AACAAACCAAGGGACCTATTTATTAGAGATAAATCAACAAGCTGAGTGTT  150
      |||||  | |||||||||||||||||||||||||||   |||||||||||
seq2  AACAA--CCAGGGACCTATTTATTAGAGATAAATCA--CAGCTGAGTGTT  134

seq1  TCTCCAAATCTCAATCCAGAGACAAAAATAGTATGTGGAACTTAAGATGG  200
      |||||||||||| |||||||||||||||||||||||||||| ||||||||
seq2  TCTCCAAATCTC-ATCCAGAGACAAAAATAGTATGTGGAAC-TAAGATGG  182

seq1  AGATAGTGCCTTCCTCATGTTAATTTCATTAGCTGGTTATAGACTCATGC  250
      |||||||| |||||||||| ||||||||||||||||||||||||||||||
seq2  AGATAGTG-CTTCCTCATG-TAATTTCATTAGCTGGTTATAGACTCATGC  230

seq1  ATGCTAGATGCAAGCCATTGGATGAAGACTTAAAACATCCTCCTGTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGATGCAAGCCATTGGATGAAGACTTAAAACATCCTCCTGTCTTC  280

seq1  ATGAACAGTAGACTCTTGGTGGATGAAAATCTCACCTGCTGTGAGCTGCG  350
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGAACAGTAGACTCTTGGTGGATGAAAATCTCA-CTGCTGTGAGCTGCG  329

seq1  GACAAGGGACAGTCTGACCCCGCCCCTCTGTGAGGGGCAGGGGATGGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGGACAGTCTGACCCCGCCCCTCTGTGAGGGGCAGGGGATGGCCT  379

seq1  GGCCCCGCCTCTCGGTGGGTAGGAATAAACGTGGAATGAACAAGCTTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCGCCTCTCGGTGGGTAGGAATAAACGTGGAATGAACAAGCTTGAA  429

seq1  CAGAGAAGCCTCCAGCCTCAGCCCTCCCTGACCCCACACTCTCTTGGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAGCCTCCAGCCTCAGCCCTCCCTGACCCCACACTCTCTTGGGTT  479

seq1  CATCTCCTTTCAGTCTCCTCCCCTCAAGACACGATGACAGATTCTATGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCTTTCAGTCTCCTCCCCTCAAGACACGATGACAGATTCTATGTG  529

seq1  CCATGTAAATGAGGAAAGTGAAGGACAGGGTTTGTTTCTCGAAGGGCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTAAATGAGGAAAGTGAAGGACAGGGTTTGTTTCTCGAAGGGCTAT  579

seq1  TGGGCAGTCATACATTCCTCCAAATGTGGCCTGATTCACAGCCAACTGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGTCATACATTCCTCCAAATGTGGCCTGATTCACAGCCAACTGCG  629

seq1  TCCCTTGCCATGAGATGGACCAAATGGACACCCCAGGCAGGGCAAAGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGCCATGAGATGGACCAAATGGACACCCCAGGCAGGGCAAAGACC  679

seq1  CCCAGAAGGCTGGAGGCCCAGGGGTCCCATCTATATGTTCCTCTTTGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGGCTGGAGGCCCAGGGGTCCCATCTATATGTTCCTCTTTGAGT  729

seq1  ATACAAGGCTGGAAATTCACCTGTGTGCATGGACTAGTTCAGTAGAGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGGCTGGAAATTCACCTGTGTGCATGGACTAGTTCAGTAGAGTAG  779

seq1  ACAGAAATAGCTCCTGACAGTTCACTGCCCTGGTGTAGAACTTCTCAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATAGCTCCTGACAGTTCACTGCCCTGGTGTAGAACTTCTCAACA  829

seq1  CAGGCTCATTCCTGAACATGTGTGCAGATGAACACTCAGAACAAGCCCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCATTCCTGAACATGTGTGCAGATGAACACTCAGAACAAGCCCCC  879

seq1  CAGTGGATCAGCAGACAAAACTTGGTCTAAGCCAACCCAGGGCCAACTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGATCAGCAGACAAAACTTGGTCTAAGCCAACCCAGGGCCAACTTG  929

seq1  ATACATTGGTTGATACTACAATCTAGGGATGCATCCAATGAGAATTTAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTGGTTGATACTACAATCTAGGGATGCATCCAATGAGAATTTAAA  979

seq1  TAAGCCAAGCCTTCTGCAAGGGGTGTGGGGGCCAAGAGAATAGGACCCAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCAAGCCTTCTGCAAGGGGTGTGGGGGCCAAGAGAATAGGACCCAA  1029

seq1  AGGGGACTGTTGGTGATCAGTGTCTGGAATCCCTGTCCTGTGAAAGGGAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACTGTTGGTGATCAGTGTCTGGAATCCCTGTCCTGTGAAAGGGAG  1079

seq1  ACGGGACAATCACTGGGCCTCCCTAGATAAGTCCGTCGAGCAGAATTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGACAATCACTGGGCCTCCCTAGATAAGTCCGTCGAGCAGAATTC  1127

seq1: chr8_11201046_11202123
seq2: B6Ng01-083K12.g_68_1139

seq1  GAATTCCTCACGGCAGCCTCCAAAACAGAGAAGACAGAGAGGATTGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCACGGCAGCCTCCAAAACAGAGAAGACAGAGAGGATTGTCTG  50

seq1  CAGGAGAGAGTGGCCATGTCTGGGCAGGAGCAGTAAGAAGCTCCTCCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGAGTGGCCATGTCTGGGCAGGAGCAGTAAGAAGCTCCTCCTGC  100

seq1  CCCATCAGCCAACATGCTCCTGACCATTGGAGGTGGACCAAAATAACTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCAGCCAACATGCTCCTGACCATTGGAGGTGGACCAAAATAACTTC  150

seq1  AACAAAGCCAGCATCTCTGGGCTCATTGCTCTCAAATGAATCTTAGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGCCAGCATCTCTGGGCTCATTGCTCTCAAATGAATCTTAGAAAT  200

seq1  GGGAAGGGACAAGAAAGGAAAGACTTGCCTATTATTTCAGTGATATTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGGACAAGAAAGGAAAGACTTGCCTATTATTTCAGTGATATTTGT  250

seq1  GCTGAAAGAAACGTCTTTTGTTAAGTTCCTTAGTTCACATATCCTGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAGAAACGTCTTTTGTTAAGTTCCTTAGTTCACATATCCTGCACA  300

seq1  CCTTATGTAAATGCTACAGAGAGGAGCCACACAGCCCTCCCCGCTGGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGTAAATGCTACAGAGAGGAGCCACACAGCCCTCCCCGCTGGCTA  350

seq1  TTAAGGATACAATGTTTCACAAGCCTTTTGAAGATTTCAGCTGCTTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGATACAATGTTTCACAAGCCTTTTGAAGATTTCAGCTGCTTTCTA  400

seq1  TAACATTTTAGCACATTCATCTACAAATGGCAAATGACCTCTTTTCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTTAGCACATTCATCTACAAATGGCAAATGACCTCTTTTCTTTC  450

seq1  TCAGCTCCCCAGCAAATGGAAGAATGGAGCCTATCACCTCGGATCACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCCCCAGCAAATGGAAGAATGGAGCCTATCACCTCGGATCACCTT  500

seq1  TGAAAATCATCCGGGTCATCTGCCCTCTCAGAACAGACTCCTATTTGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATCATCCGGGTCATCTGCCCTCTCAGAACAGACTCCTATTTGGTG  550

seq1  GGTTATAGGAAACAAAAGAGAAAGGGCTGCCAGGAGGCCAGAGCCCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATAGGAAACAAAAGAGAAAGGGCTGCCAGGAGGCCAGAGCCCTCCA  600

seq1  TGTCTAACTCACTTGAACATCTCGCTTCTCTCTATGGTGGCGAGCCAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAACTCACTTGAACATCTCGCTTCTCTCTATGGTGGCGAGCCAAAA  650

seq1  GCTGTAAGCATTTGCGTAGTAATTGCACGTTCCTCTGCCGTGGCACTCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAAGCATTTGCGTAGTAATTGCACGTTCCTCTGCCGTGGCACTCGA  700

seq1  TGAATGGGGCGCTTCTAAACTCTTCCAGACAGGACCCGGGGGATGCGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGGGCGCTTCTAAACTCTTCCAGACAGGACCCGGGGGATGCGAGG  750

seq1  GCTTGGCCGGAACCTTCAGCACCAGCGCTGGTGTGCTGTGGGACAAGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGCCGGAACCTTCAGCACCAGCGCTGGTGTGCTGTGGGACAAGCAT  800

seq1  AAGGCATGAGTCTGAGGTTTTATCACCCAAACCCAAAGAGAGATTCATCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATGAGTCTGAGGTTTTATCACCCAAACCCAAAGAGAGATTCATCG  850

seq1  TCCCT-AGGAAGGAGCCAGGATGCCTCCTCGGGAAGGTTCCAGGTCCCTC  899
      ||||| || ||||||||||||||||||||| |||||||| || |||||||
seq2  TCCCTAAGAAAGGAGCCAGGATGCCTCCTC-GGAAGGTTTCAAGTCCCTC  899

seq1  CTAGTCATCCCAGGCTCACAGACTTTGAGCCAAAAAAAAAAAAAAAAACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCATCCCAGGCTCACAGACTTTGAGCCAAAAAAAAAAAAAAAAACT  949

seq1  GCTCAACAGCCATGGTAGTCCACCATCCAGGTCTGCTGGCCAGGCTGGGA  999
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCTCAACAGCCATGGTAGTCCACCAT-CAGGTCTGCTGGCCAGGCTGGGA  998

seq1  CACTCAGGCCTCTACGCAATCCCAGAAACCAGACACCAGCTCCTCCCACT  1049
      |||||||| |||||||| || |||||||||||| | ||||  || |||||
seq2  CACTCAGG-CTCTACGC-ATTCCAGAAACCAGA-AACAGCCTCT-CCACT  1044

seq1  GAGAGGGGAGCACCCAGCTTTCTTAGAAA  1078
      |||||||||||||||||||||| ||||||
seq2  GAGAGGGGAGCACCCAGCTTTC-TAGAAA  1072