BAC Information

Click to search

BAC

Clone NameB6Ng01-084I10
Chromosome8 (Build37)7 (Build37)
Map Location 72,349,116 - 72,349,774137,705,385 - 137,705,590
singlet/doubletsingletsinglet
Overlap geneEdg4
Upstream geneInts10, Lpl, LOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip
Downstream genePbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084I10.bB6Ng01-084I10.g
ACCDH898455DH898456
length915170
definitionDH898455|Mus musculus domesticus DNA, BAC clone: B6Ng01-084I10, 5' end.DH898456|Mus musculus domesticus DNA, BAC clone: B6Ng01-084I10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(72,349,116 - 72,349,774)(137,705,385 - 137,705,590)
sequence
gaattcatcacaggacaagctggttacagagtagggtgggggtgaggaca
ggtatcactgggaagaatcagtcttggatgggaatagtgatatagtggtc
ctcctgtaccccaaagccaaagtaaccacactagcccttactaaaagccc
cacagagggactaaggacccaaattcaattccaagggccatagagtacag
agaaaactgactgccaggagctgtcctcaggtaaatggtagtgtgtgtgt
gcatacccacaaaataaattacaaaaggatttatcttattcacctgtgtg
tgtgagagagagagagagagaccgaccacatgtatgtgtttagaaaaaag
catcaggtcccttggggctagagctgcaggtggatatgagctgcctaatg
tgggtactgggaattaaattcgggtcctctcggagaacaggaagtactct
taaaagccatctttctagccccccccccaataaataaaccccaaagggga
gccaggtgtggtggcacatacccatcgccccaggggaagaggaataggaa
ggtgtggtggcacatacccatcgtcccaggggaagaggaataggaagatc
agggctctgaggcctgcctcagctacagagagagcttcaggtcccccctg
aacttcatgaaaccctgaattaaagaaatgaagccagcccagtgtgatgg
tgcttattttaatcccagcactcggaggtggagggcaggggggcacagag
gcatgtatctgtgtgagtttgaggccagcctggtctaccaagtgagctcc
aagccagtctggactatacagtgatacccaacctcaaaagaaagtcaaat
aaacaagtaagcaaaaataacaaccagggctagagagagatggctttaat
ggttcagagtacaga
aattcgcaacaatgacatggtagctatccataatgggatccaatgccctc
ttctggtgtgtctgaggaaagcaaatacatatatatatatatatgtatat
atatatgtgtgtgtgtgtgtatgtatgtatatatatatatatatttacaa
aaaagaaaggaagggaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_72349116_72349774
seq2: B6Ng01-084I10.b_41_699 (reverse)

seq1  CATGAAGTTCAGGGGGGACCTGAAGCTCTCTCTGTAGCTGAGGCAGGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGTTCAGGGGGGACCTGAAGCTCTCTCTGTAGCTGAGGCAGGCCT  50

seq1  CAGAGCCCTGATCTTCCTATTCCTCTTCCCCTGGGACGATGGGTATGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCCTGATCTTCCTATTCCTCTTCCCCTGGGACGATGGGTATGTGC  100

seq1  CACCACACCTTCCTATTCCTCTTCCCCTGGGGCGATGGGTATGTGCCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACACCTTCCTATTCCTCTTCCCCTGGGGCGATGGGTATGTGCCACC  150

seq1  ACACCTGGCTCCCCTTTGGGGTTTATTTATTGGGGGGGGGGCTAGAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGGCTCCCCTTTGGGGTTTATTTATTGGGGGGGGGGCTAGAAAGA  200

seq1  TGGCTTTTAAGAGTACTTCCTGTTCTCCGAGAGGACCCGAATTTAATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTAAGAGTACTTCCTGTTCTCCGAGAGGACCCGAATTTAATTCC  250

seq1  CAGTACCCACATTAGGCAGCTCATATCCACCTGCAGCTCTAGCCCCAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCCACATTAGGCAGCTCATATCCACCTGCAGCTCTAGCCCCAAGG  300

seq1  GACCTGATGCTTTTTTCTAAACACATACATGTGGTCGGTCTCTCTCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGATGCTTTTTTCTAAACACATACATGTGGTCGGTCTCTCTCTCTC  350

seq1  TCTCTCACACACACAGGTGAATAAGATAAATCCTTTTGTAATTTATTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCACACACACAGGTGAATAAGATAAATCCTTTTGTAATTTATTTTG  400

seq1  TGGGTATGCACACACACACTACCATTTACCTGAGGACAGCTCCTGGCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATGCACACACACACTACCATTTACCTGAGGACAGCTCCTGGCAGT  450

seq1  CAGTTTTCTCTGTACTCTATGGCCCTTGGAATTGAATTTGGGTCCTTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTCTCTGTACTCTATGGCCCTTGGAATTGAATTTGGGTCCTTAGT  500

seq1  CCCTCTGTGGGGCTTTTAGTAAGGGCTAGTGTGGTTACTTTGGCTTTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGTGGGGCTTTTAGTAAGGGCTAGTGTGGTTACTTTGGCTTTGGG  550

seq1  GTACAGGAGGACCACTATATCACTATTCCCATCCAAGACTGATTCTTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGAGGACCACTATATCACTATTCCCATCCAAGACTGATTCTTCCC  600

seq1  AGTGATACCTGTCCTCACCCCCACCCTACTCTGTAACCAGCTTGTCCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATACCTGTCCTCACCCCCACCCTACTCTGTAACCAGCTTGTCCTGT  650

seq1  GATGAATTC  659
      |||||||||
seq2  GATGAATTC  659

seq1: chr7_137705385_137705590
seq2: B6Ng01-084I10.g_137_216 (reverse)

seq1  TATATATATATATATACACACACACACACACACACACACACACACACACA  50
      |||||||||||||||||| ||| |||||||||||||||            
seq2  TATATATATATATATACATACATACACACACACACACA------------  38

seq1  CAAGTATATATATACATATATATACACACACGTATAT-AGATACACGTAT  99
          |||||||||||||||||||| | | | |||| |    | | |    
seq2  ----TATATATATACATATATATATATATATGTATTTGCTTTCCTC----  80

seq1  ATACACACACATACATATATATGTATACATACATATATATGTACACACAC  149
                                                        
seq2  --------------------------------------------------  80

seq1  ACACACACACATATATATATATCACACAGAAACCAGCCCCTATTGTTTGC  199
                                                        
seq2  --------------------------------------------------  80

seq1  TTTCCTC  206
             
seq2  -------  80