BAC Information

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BAC

Clone NameB6Ng01-084I12
Chromosome8 (Build37)5 (Build37)
Map Location 58,452,107 - 58,452,54288,292,757 - 88,293,697
singlet/doubletsingletsinglet
Overlap geneGlra3, LOC664812
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356, LOC664916, Adam29
Downstream geneHpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433, LOC654355
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084I12.bB6Ng01-084I12.g
ACCDH898459DH898460
length1,013943
definitionDH898459|Mus musculus domesticus DNA, BAC clone: B6Ng01-084I12, 5' end.DH898460|Mus musculus domesticus DNA, BAC clone: B6Ng01-084I12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(58,452,107 - 58,452,542)(88,292,757 - 88,293,697)
sequence
gaattctttgtttagctcagtacctcattttaacatagtagtttggtttt
ctggagtccaacatcttgagttctttatatatatttgatattagccccct
atcagatttagtattggtaaagatcttttcctaatctgttggttttcttt
tggtcttattgacagtgtcctttgccttacagaagctttgcaattttatg
aggttccatttgtctattcctgatcttacagccctaaccgttggtattca
ggaatctttcccctgtgcccatatcttcaagattcatcaccagtttctcc
tctataagtttcagagtctctgtttttatgtggagttctttaatccacat
agacttgagatttgtataatgaggtaagaatggatcaatttgcattcttc
tacatgcagactgccagttgatccagcaccttctgttgaagatgttgtct
tctttccactggatggttttagttcctttgtcaaagatcaagtggtcata
ggtgtgtgggttcatttctgggtcttcaattctgttccattgatctacct
atctgccaacataccagtaacatgcaggtttttttttttcataattgctc
tgcagtacatcttgaggtcagggatggtgattccagcagaggttctttga
ttgctgagaatagtttttgctatcctaggatttttgttattccagatgaa
tttgcaaattgccatttctttcctttttttttttccctatgaatgacatt
ttattcagtcattttctttacaactgaaactctgggaattcaaaattaac
atccttgcctgtgagcttcttgtacacaccagaaaaagtttcaaccttgt
gttccacgttgttctgctgtgctttgactttctaactcagtgaagaattt
gagttggaattttgatggggattgcatgaatctgtagattgcttttggca
agaaagccatttttactataaataatcctgccagttcatgagcatgggag
atctttccatctt
gaattcttaaactatgacaccaaaacgaataatcacactatttctaacaa
atatatccttgttatagtactttattatttcatggtactttttattagtt
atactgcatttttttttacaaatatattatctcaatgttcaccctacagt
tttaacaacataaaggggattcttggtcctatcaagaatcatcagcaatt
ttaaccaatgtaagttctctgtcacttacaaccaatgtaatttcaggcaa
actaatcctttggattaatttactcatcagtaaaataattcaaaagatac
aaaaataatgcttatcttaaacaaaagactttgaaaaaaggatttttgta
catgtgcacgaaatagaaattagtacttgcttttgaaaatctatttctgg
ggctgtcaagatggctcagaggataacagcactgactgctcttctgaagg
ttctgagttcaaatcccagcaaccacatggtgcctcacaaccacctgtaa
tgggatctgatgccctcttctggtgtgtcagaagacagcatcacagtgta
cttatttataataataaataaatctttggaccagagagagtggggaccac
cagagagagcagggtcgaccagagtgagcagaggtcctaaattcaattcc
caacaatcacataaaggctcacaaccatctgtacagctacagtgaactca
tatacataaaataaatacattttaaaaaagaaaagaaaatctatttctgt
tgagataatacaaacttggtttatttatgtctacataagttttttgaatc
tgaaaattgttttatatgctaatgagcaaagacaaatatgaatacatgcc
ctacttaatgatattgttatattttttatttcaaaacaggaccaggaatg
ggagtgggtaggttggggaacaggggaaaggtgggaggggatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_58452107_58452542
seq2: B6Ng01-084I12.b_298_919

seq1  TTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTA  50
      | |||||||||||||||||||||||||  |  || ||| |||||||||||
seq2  TCTTTCCCCTGTGCCCATATCTTCAAGATTCATCACCAGTTTCTCCTCTA  50

seq1  TAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGAT  100
      |||||||||| ||||||| ||||||||| ||||| || |||||| |||| 
seq2  TAAGTTTCAGAGTCTCTGTTTTTATGTGGAGTTCTTTAATCCACATAGAC  100

seq1  TTGACCTTAGTACAAGGAGATAATTAATAGCT-GAGTAGCACTCCACT--  147
      ||||  || ||| || ||| |||  ||| | |  | | ||| ||  ||  
seq2  TTGAGATTTGTATAATGAGGTAA-GAATGGATCAATTTGCATTCTTCTAC  149

seq1  GTGTAAA--------TGTACCA-CATTTTCTG-----------------T  171
       || | |        ||  ||| ||  |||||                 |
seq2  ATGCAGACTGCCAGTTGATCCAGCACCTTCTGTTGAAGATGTTGTCTTCT  199

seq1  ATCCA--------------TTCCTCTGT----------------------  185
       ||||              ||||| |||                      
seq2  TTCCACTGGATGGTTTTAGTTCCTTTGTCAAAGATCAAGTGGTCATAGGT  249

seq1  -TGAGGG-GCA--TCTGGG-------TTCT-TTCCA-GCTTCTGGCTAT-  221
       || |||  ||  ||||||       |||| |||||    |||  |||| 
seq2  GTGTGGGTTCATTTCTGGGTCTTCAATTCTGTTCCATTGATCTACCTATC  299

seq1  --------TATAAATAA----------------------AGCTGCTAT--  239
              ||  | |||                      |  |||| |  
seq2  TGCCAACATACCAGTAACATGCAGGTTTTTTTTTTTCATAATTGCTCTGC  349

seq1  -GAACAT---------AG---TGG-------AGCATGTGTTC--------  261
       | ||||         ||   |||       ||||   ||||        
seq2  AGTACATCTTGAGGTCAGGGATGGTGATTCCAGCAGAGGTTCTTTGATTG  399

seq1  ---------------------------------------------ATTTT  266
                                                   | |||
seq2  CTGAGAATAGTTTTTGCTATCCTAGGATTTTTGTTATTCCAGATGAATTT  449

seq1  ACAAGTTGGAACCTCTT---TATTTTTTTTAAACTATGAATGACACTATA  313
       ||| |||  |  ||||   | ||||||||   |||||||||||| | ||
seq2  GCAAATTGCCATTTCTTTCCTTTTTTTTTTTCCCTATGAATGACATTTTA  499

seq1  TTCAGTCATTTTCTTTACAATTGAAACTCTGGGAATTCAAAATTAACATC  363
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTCAGTCATTTTCTTTACAACTGAAACTCTGGGAATTCAAAATTAACATC  549

seq1  CTTGCCTATGAGCTTCTTGTACACAGCAGAGAAAGTTCCGACCTTGTGTT  413
      ||||||| ||||||||||||||||| |||| |||||| | ||||||||||
seq2  CTTGCCTGTGAGCTTCTTGTACACACCAGAAAAAGTTTCAACCTTGTGTT  599

seq1  CCATGTTGTTCTGCTGTGCTTTG  436
      ||| |||||||||||||||||||
seq2  CCACGTTGTTCTGCTGTGCTTTG  622

seq1: chr5_88292757_88293697
seq2: B6Ng01-084I12.g_69_1010 (reverse)

seq1  ATCCCCT-CCACCTTTCCCCTGTTCCCCAACCTACCCACTCCCATTCCTG  49
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTCCCACCTTTCCCCTGTTCCCCAACCTACCCACTCCCATTCCTG  50

seq1  GTCCTGTTTTGAAATAAAAAATATAACAATATCATTAAGTAGGGCATGTA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTTTTGAAATAAAAAATATAACAATATCATTAAGTAGGGCATGTA  100

seq1  TTCATATTTGTCTTTGCTCATTAGCATATAAAACAATTTTCAGATTCAAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTTGTCTTTGCTCATTAGCATATAAAACAATTTTCAGATTCAAA  150

seq1  AAACTTATGTAGACATAAATAAACCAAGTTTGTATTATCTCAACAGAAAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTATGTAGACATAAATAAACCAAGTTTGTATTATCTCAACAGAAAT  200

seq1  AGATTTTCTTTTCTTTTTTAAAATGTATTTATTTTATGTATATGAGTTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTCTTTTCTTTTTTAAAATGTATTTATTTTATGTATATGAGTTCA  250

seq1  CTGTAGCTGTACAGATGGTTGTGAGCCTTTATGTGATTGTTGGGAATTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCTGTACAGATGGTTGTGAGCCTTTATGTGATTGTTGGGAATTGA  300

seq1  ATTTAGGACCTCTGCTCACTCTGGTCGACCCTGCTCTCTCTGGTGGTCCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGACCTCTGCTCACTCTGGTCGACCCTGCTCTCTCTGGTGGTCCC  350

seq1  CACTCTCTCTGGTCCAAAGATTTATTTATTATTATAAATAAGTACACTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCTCTGGTCCAAAGATTTATTTATTATTATAAATAAGTACACTGT  400

seq1  GATGCTGTCTTCTGACACACCAGAAGAGGGCATCAGATCCCATTACAGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGTCTTCTGACACACCAGAAGAGGGCATCAGATCCCATTACAGGT  450

seq1  GGTTGTGAGGCACCATGTGGTTGCTGGGATTTGAACTCAGAACCTTCAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGAGGCACCATGTGGTTGCTGGGATTTGAACTCAGAACCTTCAGA  500

seq1  AGAGCAGTCAGTGCTGTTATCCTCTGAGCCATCTTGACAGCCCCAGAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGTCAGTGCTGTTATCCTCTGAGCCATCTTGACAGCCCCAGAAAT  550

seq1  AGATTTTCAAAAGCAAGTACTAATTTCTATTTCGTGCACATGTACAAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTCAAAAGCAAGTACTAATTTCTATTTCGTGCACATGTACAAAAA  600

seq1  TCCTTTTTTCAAAGTCTTTTGTTTAAGATAAGCATTATTTTTGTATCTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTTCAAAGTCTTTTGTTTAAGATAAGCATTATTTTTGTATCTTT  650

seq1  TGAATTATTTTACTGATGAGTAAATTAATCCAAAGGATTAGTTTGCCTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTATTTTACTGATGAGTAAATTAATCCAAAGGATTAGTTTGCCTGA  700

seq1  AATTACATTGGTTGTAAGTGACAGAGAACTTACATTGGTTAAAATTGCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACATTGGTTGTAAGTGACAGAGAACTTACATTGGTTAAAATTGCTG  750

seq1  ATGATTCTTGATAGGACCAAGAATCCCCTTTATGTTGTTAAAACTGTAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCTTGATAGGACCAAGAATCCCCTTTATGTTGTTAAAACTGTAGG  800

seq1  GTGAACATTGAGATAATATATTTGTAAAAAAAAATGCAGTATAACTAATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACATTGAGATAATATATTTGTAAAAAAAAATGCAGTATAACTAATA  850

seq1  AAAAGTACCATGAAATAATAAAGTACTATAACAAGGATATATTTGTTAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTACCATGAAATAATAAAGTACTATAACAAGGATATATTTGTTAGA  900

seq1  AATAGTGTGATTATTCGTTTTGGTGTCATAGTTTAAGAATTC  941
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGTGATTATTCGTTTTGGTGTCATAGTTTAAGAATTC  942