BAC Information

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BAC

Clone NameB6Ng01-084O09
Chromosome8 (Build37)
Map Location 65,546,766 - 65,639,701
singlet/doubletdoublet
Overlap geneSpock3
Upstream geneAnxa10, LOC100040775, LOC384830, LOC100040804, LOC665267
Downstream geneLOC384831, EG244495, Tll1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084O09.bB6Ng01-084O09.g
ACCDH898720DH898721
length1,1051,175
definitionDH898720|Mus musculus domesticus DNA, BAC clone: B6Ng01-084O09, 5' end.DH898721|Mus musculus domesticus DNA, BAC clone: B6Ng01-084O09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,546,766 - 65,547,835)(65,638,512 - 65,639,701)
sequence
gaattcaatagtctagggtagggatcgatttttccagtaccaggcattgc
tttcctttggtcaaacgagccttaagtataattccagtgttgttgtttac
ggccaaggcatggatgcaattacagtacctcttagagttattgttccatt
ctggtcattgttgtagttcataggaaccctattgtgattggaatcttggt
tgtttctcttcattggaatgatttctgataccactgaagctagtcctccg
gaaggaggcattcaaatcagcagagtctccctgccctatgagtggtgtgc
atatttcttcaccagtagggcattgaacttctatatctcatgcacagcca
agttcaatagcaatagcctgtaattttggggcagtttcttggacaacatt
gatttataactcacatgcctggtttatggtttttaatttgatagtatttg
ccctttcaagaagcattgtcagaacagatgggaaattttcctttaaacta
aagtgtatatttgtacaggaacttcttatgactattcaatactattgttt
taatgaattttctttttccatgcaagatttttggtgtgtatatgtgtatt
agcatatcatagatacttgtttaagaataaagtttctgatacacagactg
actacccaaaagtcatgcattttataacatatatgttaggctgtatgagg
agctaacacattttgtacttaatatatgtttagaaaacatatattgtttt
ctcattactgtttattctctaccgaattttcctcctttcgtgtgtattat
ctttctaattaaaggattactttcagcagtagtttgtggtatgaatattt
ttcatatgacttatagtttaactgaaaatctttcggtttttttttttttt
tttttccattttttattaggtatttagctcatttacatttcgatgctata
caaaagtccccttaccaccacccccactcccctaccaaccactcccccct
tggccctgggcgttccctgtacgggaacacacaagtctgcggtcaatggc
ctcttcagtatggcgactagcattttgtaacatggagcgagagtcagagc
tcagg
gaattcttttacatgtttaagtaccattctgaacctctgaaattttgctt
tggatgttttattttcactatcaatttcattgctatgcatttgaatatac
agaattcatgtgcttactatctaattatcattttgtaattttgaatttat
ttatagaattaaagaaattaggtagcatatatggaaacctgaagatatca
cacaaaacaataattcttaaaccagagaagaaatgatcgttttagaagtc
cagaacataattgtggcactagagacttataaaaataatgatgagaactg
ctagttctcattattaaatcatgagagcaagaaaaaaagcagatgttgat
gcatttcatgtccatcaattaaaccaataggtctgagaattactgaacac
aatgtcagaaaaaaaccaacccaatgatttctgttttctatgtgaacaca
cagatgagttcaacccacacaaaaggaaggtgataatttatgacacataa
attataaactagagtcttataaaggaccatattacagaattagagaaaat
aatgacatagtcatcaaacaatggtgattatctaaaaagattagaataat
catccacagcgattggtccttatagatgaaaagaaaattctgtgatatag
aagagctagcttttagtctcagatacattaatggatataaagttgtgtgc
tgtagcttgtttttggtagtttgtgggttcttattccagtcatttatggt
atagttttcacccctcttcactagataggagagaaagaaggatagagaga
aaaaagagatagagatatctgaatctaattatttcatcttgtttctttgc
ttttagctggtctttgctactttgttcattcttgttttctcaccatttct
tcatatcaccccttgttttacccactatagataaaggaaagaagggatag
agggacagaaggaaaggagagagataggggatgtctgatttaatttcctc
ttcttgtatcttctttggagacaactactaacaaacagaaaccactctct
ctgaacaacacaggccacgccaccctactctaggggtatacattatacac
tctggaaagctctcgggatcaatattcagatcacagactctctatgacaa
ctcaacaatattagagatcgaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_65546766_65547835
seq2: B6Ng01-084O09.b_110_1153

seq1  CAAACGAGCCTTAAGTATAATTCCAGTGTTGTTGTTTACGGCCAAGGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACGAGCCTTAAGTATAATTCCAGTGTTGTTGTTTACGGCCAAGGCAT  50

seq1  GGATGCAATTACAGTACCTCTTAGAGTTATTGTTCCATTCTGGTCATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCAATTACAGTACCTCTTAGAGTTATTGTTCCATTCTGGTCATTGT  100

seq1  TGTAGTTCATAGGAACCCTATTGTGATTGGAATCTTGGTTGTTTCTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTCATAGGAACCCTATTGTGATTGGAATCTTGGTTGTTTCTCTTC  150

seq1  ATTGGAATGATTTCTGATACCACTGAAGCTAGTCCTCCGGAAGGAGGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAATGATTTCTGATACCACTGAAGCTAGTCCTCCGGAAGGAGGCAT  200

seq1  TCAAATCAGCAGAGTCTCCCTGCCCTATGAGTGGTGTGCATATTTCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCAGCAGAGTCTCCCTGCCCTATGAGTGGTGTGCATATTTCTTCA  250

seq1  CCAGTAGGGCATTGAACTTCTATATCTCATGCACAGCCAAGTTCAATAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAGGGCATTGAACTTCTATATCTCATGCACAGCCAAGTTCAATAGC  300

seq1  AATAGCCTGTAATTTTGGGGCAGTTTCTTGGACAACATTGATTTATAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCTGTAATTTTGGGGCAGTTTCTTGGACAACATTGATTTATAACT  350

seq1  CACATGCCTGGTTTATGGTTTTTAATTTGATAGTATTTGCCCTTTCAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCCTGGTTTATGGTTTTTAATTTGATAGTATTTGCCCTTTCAAGA  400

seq1  AGCATTGTCAGAACAGATGGGAAATTTTCCTTTAAACTAAAGTGTATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGTCAGAACAGATGGGAAATTTTCCTTTAAACTAAAGTGTATATT  450

seq1  TGTACAGGAACTTCTTATGACTATTCAATACTATTGTTTTAATGAATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGGAACTTCTTATGACTATTCAATACTATTGTTTTAATGAATTTT  500

seq1  CTTTTTCCATGCAAGATTTTTGGTGTGTATATGTGTATTAGCATATCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCATGCAAGATTTTTGGTGTGTATATGTGTATTAGCATATCATA  550

seq1  GATACTTGTTTAAGAATAAAGTTTCTGATACACAGACTGACTACCCAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTGTTTAAGAATAAAGTTTCTGATACACAGACTGACTACCCAAAA  600

seq1  GTCATGCATTTTATAACATATATGTTAGGCTGTATGAGGAGCTAACACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGCATTTTATAACATATATGTTAGGCTGTATGAGGAGCTAACACAT  650

seq1  TTTGTACTTAATATATGTTTAGAAAACATATATTGTTTTCTCATTACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACTTAATATATGTTTAGAAAACATATATTGTTTTCTCATTACTGT  700

seq1  TTATTCTCTACCGAATTTTCCTCCTTTCGTGTGTATTATCTTTCTAATT-  749
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTATTCTCTACCGAATTTTCCTCCTTTCGTGTGTATTATCTTTCTAATTA  750

seq1  AAGGATTACTTTCAGCAGTAGTTTGTGGTATGAATATTTTTCATATGACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTACTTTCAGCAGTAGTTTGTGGTATGAATATTTTTCATATGACT  800

seq1  TATAGTTTAACTGAAAATCTTTCGGTTTTTTTTTTTTTTTTTTTTTCCAT  849
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  TATAGTTTAACTGAAAATCTTTCGG--TTTTTTTTTTTTTTTTTTTCCAT  848

seq1  TTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGT  899
      ||||||||||||||||||||||||||||||| | |||||||| |||||||
seq2  TTTTTATTAGGTATTTAGCTCATTTACATTT-CGATGCTATA-CAAAAGT  896

seq1  CCCCCTTACCCACCCACCCCCACTCCCCTACCCACCCACTCCCCCCCTTT  949
       |||||||||   ||||||||||||||||| ||| |||||||||||  ||
seq2  -CCCCTTACC--ACCACCCCCACTCCCCTA-CCAACCACTCCCCCC--TT  940

seq1  GGCCCT-GGCGTTCCCCTGTACCGGGACACACAAAGTCTGCGTGTCCAAT  998
      |||||| |||||| |||||||| || |||||| ||||||||| || ||||
seq2  GGCCCTGGGCGTT-CCCTGTACGGGAACACAC-AAGTCTGCG-GT-CAAT  986

seq1  GGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATG  1048
       ||||||    | |||| |||| |||||||  ||  |||||  ||  |||
seq2  -GGCCTC----TTCAGT-ATGG-CGACTAG--CA--TTTTGTAAC--ATG  1023

seq1  CAGCTAGAGTCAAGAGCTCAGG  1070
       ||| |||||| ||||||||||
seq2  GAGCGAGAGTC-AGAGCTCAGG  1044

seq1: chr8_65638512_65639701
seq2: B6Ng01-084O09.g_68_1242 (reverse)

seq1  TGCCTCGTACTCTAATATTGTTGTAGTTTTGTCAAATGTAGAGAGTTCTG  50
      |||||||  |||||||||||||| ||  ||||||    ||||||| ||||
seq2  TGCCTCGATCTCTAATATTGTTG-AG--TTGTCA----TAGAGAG-TCTG  42

seq1  TGATTCTGTGATATTTGTAATTCTGGGAGCTTTTCAGAGTGTATATAAAT  100
      ||| ||||  ||||   | || | | ||||||| ||||||||||   |||
seq2  TGA-TCTG-AATAT---TGATCCCGAGAGCTTTCCAGAGTGTAT---AAT  84

seq1  GTTATACCCCTAAGAGGTAGGGT-GCGTGGCTGTTGTTTGTTCAGAGAGG  149
      | ||||||||| ||| ||||||| |||||||   || |||||||||||| 
seq2  G-TATACCCCT-AGA-GTAGGGTGGCGTGGCCTGTG-TTGTTCAGAGAGA  130

seq1  GTGGTTTCTGTTTGTTAGTAGTTGTCT-CAAAGAAGATACAAGAAGAAGG  198
      ||||||||||||||||||||||||||| |||||||||||||||||| |||
seq2  GTGGTTTCTGTTTGTTAGTAGTTGTCTCCAAAGAAGATACAAGAAG-AGG  179

seq1  AAATTAAATTCAGACAT-CCCTATCTCTCT-CTTTCCTTCTGT-CCTCTA  245
      |||||||| |||||||| |||||||||||| |||||||||||| ||||||
seq2  AAATTAAA-TCAGACATCCCCTATCTCTCTCCTTTCCTTCTGTCCCTCTA  228

seq1  T-CCTTCTTT-CTTTATCTATAGTGGGTAAAACAAGGGGTGATATGAAGA  293
      | |||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTTTCCTTTATCTATAGTGGGTAAAACAAGGGGTGATATGAAGA  278

seq1  AATGGTGAGAAAACAAGAATGAACAAAGTAGCAAAGACCAGCTAAAAGCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGAGAAAACAAGAATGAACAAAGTAGCAAAGACCAGCTAAAAGCA  328

seq1  AAGAAACAAGATGAAATAATTAGATTCAGATATCTCTATCTCTTTTTTCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAAGATGAAATAATTAGATTCAGATATCTCTATCTCTTTTTTCT  378

seq1  CTCTATCCTTCTTTCTCTCCTATCTAGTGAAGAGGGGTGAAAACTATACC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCCTTCTTTCTCTCCTATCTAGTGAAGAGGGGTGAAAACTATACC  428

seq1  ATAAATGACTGGAATAAGAACCCACAAACTACCAAAAACAAGCTACAGCA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGACTGGAATAAGAACCCACAAACTACCAAAAACAAGCTACAGCA  478

seq1  CACAACTTTATATCCATTAATGTATCTGAGACTAAAAGCTAGCTCTTCTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTTTATATCCATTAATGTATCTGAGACTAAAAGCTAGCTCTTCTA  528

seq1  TATCACAGAATTTTCTTTTCATCTATAAGGACCAATCGCTGTGGATGATT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAGAATTTTCTTTTCATCTATAAGGACCAATCGCTGTGGATGATT  578

seq1  ATTCTAATCTTTTTAGATAATCACCATTGTTTGATGACTATGTCATTATT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAATCTTTTTAGATAATCACCATTGTTTGATGACTATGTCATTATT  628

seq1  TTCTCTAATTCTGTAATATGGTCCTTTATAAGACTCTAGTTTATAATTTA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAATTCTGTAATATGGTCCTTTATAAGACTCTAGTTTATAATTTA  678

seq1  TGTGTCATAAATTATCACCTTCCTTTTGTGTGGGTTGAACTCATCTGTGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCATAAATTATCACCTTCCTTTTGTGTGGGTTGAACTCATCTGTGT  728

seq1  GTTCACATAGAAAACAGAAATCATTGGGTTGGTTTTTTTCTGACATTGTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACATAGAAAACAGAAATCATTGGGTTGGTTTTTTTCTGACATTGTG  778

seq1  TTCAGTAATTCTCAGACCTATTGGTTTAATTGATGGACATGAAATGCATC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAATTCTCAGACCTATTGGTTTAATTGATGGACATGAAATGCATC  828

seq1  AACATCTGCTTTTTTTCTTGCTCTCATGATTTAATAATGAGAACTAGCAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTGCTTTTTTTCTTGCTCTCATGATTTAATAATGAGAACTAGCAG  878

seq1  TTCTCATCATTATTTTTATAAGTCTCTAGTGCCACAATTATGTTCTGGAC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATCATTATTTTTATAAGTCTCTAGTGCCACAATTATGTTCTGGAC  928

seq1  TTCTAAAACGATCATTTCTTCTCTGGTTTAAGAATTATTGTTTTGTGTGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAACGATCATTTCTTCTCTGGTTTAAGAATTATTGTTTTGTGTGA  978

seq1  TATCTTCAGGTTTCCATATATGCTACCTAATTTCTTTAATTCTATAAATA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCAGGTTTCCATATATGCTACCTAATTTCTTTAATTCTATAAATA  1028

seq1  AATTCAAAATTACAAAATGATAATTAGATAGTAAGCACATGAATTCTGTA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAAATTACAAAATGATAATTAGATAGTAAGCACATGAATTCTGTA  1078

seq1  TATTCAAATGCATAGCAATGAAATTGATAGTGAAAATAAAACATCCAAAG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAATGCATAGCAATGAAATTGATAGTGAAAATAAAACATCCAAAG  1128

seq1  CAAAATTTCAGAGGTTCAGAATGGTACTTAAACATGTAAAAGAATTC  1190
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTTCAGAGGTTCAGAATGGTACTTAAACATGTAAAAGAATTC  1175