BAC Information

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BAC

Clone NameB6Ng01-085E21
Chromosome8 (Build37)
Map Location 8,270,549 - 8,408,373
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039836, Efnb2, 9430010O03Rik, Tmem28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085E21.bB6Ng01-085E21.g
ACCDH899016DH899017
length1,1361,092
definitionDH899016|Mus musculus domesticus DNA, BAC clone: B6Ng01-085E21, 5' end.DH899017|Mus musculus domesticus DNA, BAC clone: B6Ng01-085E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,407,235 - 8,408,373)(8,270,549 - 8,271,641)
sequence
gaattcctcgatgtatattaatggcatctggtaccaagcctggggagaac
agacatatcatcaaagccagtgaatgatatttaatgctgtttaacttttg
ttcccattttgaattctgagaaaaatgtatttgtctaggtcaactctcag
cttactttgataattcctgtcgttgtatgtgagagacttttcattttctt
ctttggtaagttcagtgctttagggcaagttggggcaggattcttggtgt
tctggtgtctttatgagttttcatgggttacactggcgagccgtcagaag
actcagtaaaacaattggcaggaaaaattaggatttttcagggagattag
tgaccactttgattcttttccatactatgcctctggtcttaataaaaatc
aaatggaaacatcaagcagagatgtagctttggcactggcagccttgtgc
cctggccagtagtgctgctgtagatcaaatacttcacttctttaatgatt
gacaaattcactcattgattcatttaacaagcccttctacagtgttctag
gcatgaaaaagaaaaccggtaactgtcatctagcatctatctcatggctt
agaaggaagaagggatgagatattccccacggtaaagatggagcaaactg
agcacagtagtgagtcaatggggtagctgctgtccctgaacagggaggat
tttggtggaacaatagtagtttcctgtgttgactgagcaggaaagtgcag
tcaagtagagaaaagagaaaatgtataaaagcaggaaacagcccaatgtg
ctcacgcatggtttctggcttgaggtgtctggagtgtgaggcatgaggtc
aggggtctatactgccatgggagacaaccctggagaaagaggaaggctgg
ctcccccagcatcacacccactgcattttgctctaagtggtttgaaatct
tgaaaccaccaaaggatatgaaagcagatggggaatgtgatcgtgtattg
cttttgaaagccacttgaacagcaacggagggcatggaatgggtaggtct
cagtctggaggtgaagggacaaatacggaagaagaatgaagtatccctgg
aaatggttgagctacactcacttctgacttgcaagc

gaattcattccaggctgtaatataaagctgtgggttaagccgtactccaa
ggtccaccacaagcacacaaagtttatttagttctttgtttttgtttttg
tttttgtttcttaaacctcctttcagttttctctacttctctctttgcct
tttatgtatgtgtgcatgcagtactgatttttttctcttcatatttcaag
tgatttatcttgaaagggaatctaactttgtaaaatctctgtggattcac
agcaataagcaagaaagcaactgggcaatccctttatactgtcaatattt
atttatgtctaaattttgttgactgagtggtgtcgtttcgaagcctttag
ggcagagctcctgtgcaatttgctttgtttatttattagtatgccagcac
atgtctacaaagagctacagtggtttcagaatgttattcgtaaaaccaac
tcacacctttataattatcacatttggggaaagttttgttattgtccaga
tggctatcatttacgtctaattttgtagaaatgggggcacactatcaaat
ttcagaatactgtgttaaacatgatccacttagaaattattcttttctct
gctgccaaaatggtaatacttcactgagctcaatgtattaataatggatg
acttaataaaatttgaggaatataaataattaacattaatgataatgtta
gttttatattcttcaatatataactactcagtagtttagtaaaatggaga
agatttataggatttggagaaaacccatactattgcattttatttttata
aaattgaacatatgcataaagctattataaaggttacttggtgacaagtt
taagatattattatgcaattcaggattagatgcaatcattaatgtcagct
atgtttaaggagaacatatcattttgtgtgtctttggggaattgtgaata
attcaaattaaaatgcaattatgtttaaatatttctcgggggaaaattgt
tttactcagtaggtgggattggggactagggctactatgctgagctatgt
tatgatgttctatgacctatggaattagaaggaaaaaatgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_8407235_8408373
seq2: B6Ng01-085E21.b_44_1179 (reverse)

seq1  GCTTGCAAAGTCAGAAGTGA-TGTAGCTTCAACATTTTCCCAGGGTTACT  49
      |||||| ||||||||||||| |||||||  | |||||  |||||| ||||
seq2  GCTTGC-AAGTCAGAAGTGAGTGTAGCTCAACCATTT--CCAGGGATACT  47

seq1  TCATTCTCTTCCCGTA-TTGTCCCTTCACCTCCAGACTGAGACCTACCCA  98
      |||||||  | ||||| |||||||||||||||||||||||||||||||||
seq2  TCATTCTTCTTCCGTATTTGTCCCTTCACCTCCAGACTGAGACCTACCCA  97

seq1  -TCCATGCTCCTCCGTTGCTGTTCAAGTGGCCTTTCAAAAGCATAACACG  147
       ||||||| ||||||||||||||||||||| ||||||||||||  |||||
seq2  TTCCATGC-CCTCCGTTGCTGTTCAAGTGG-CTTTCAAAAGCAATACACG  145

seq1  ATCACATTCCCCATCTGCTTTCATATCCTTTGGTGGTTCCAGATTTTCAA  197
      |||||||||||||||||||||||||||||||||||||| ||   ||||||
seq2  ATCACATTCCCCATCTGCTTTCATATCCTTTGGTGGTTTCAAGATTTCAA  195

seq1  ACCACTTAGAGCAAAATGCAGTGGGTGTGATGCTTGGGGGAGCCAGCCTT  247
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACCACTTAGAGCAAAATGCAGTGGGTGTGATGC-TGGGGGAGCCAGCCTT  244

seq1  CCTCTTTCTCCAGGGTTGTCTCCCATGGCAGTATAGACCCCTGACCTCAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTCTCCAGGGTTGTCTCCCATGGCAGTATAGACCCCTGACCTCAT  294

seq1  GCCTCACACTCCAGACACCTCAAGCCAGAAACCATGCGTGAGCACATTGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCACACTCCAGACACCTCAAGCCAGAAACCATGCGTGAGCACATTGG  344

seq1  GCTGTTTCCTGCTTTTATACATTTTCTCTTTTCTCTACTTGACTGCACTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTCCTGCTTTTATACATTTTCTCTTTTCTCTACTTGACTGCACTT  394

seq1  TCCTGCTCAGTCAACACAGGAAACTACTATTGTTCCACCAAAATCCTCCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTCAGTCAACACAGGAAACTACTATTGTTCCACCAAAATCCTCCC  444

seq1  TGTTCAGGGACAGCAGCTACCCCATTGACTCACTACTGTGCTCAGTTTGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGGGACAGCAGCTACCCCATTGACTCACTACTGTGCTCAGTTTGC  494

seq1  TCCATCTTTACCGTGGGGAATATCTCATCCCTTCTTCCTTCTAAGCCATG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTTACCGTGGGGAATATCTCATCCCTTCTTCCTTCTAAGCCATG  544

seq1  AGATAGATGCTAGATGACAGTTACCGGTTTTCTTTTTCATGCCTAGAACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATGCTAGATGACAGTTACCGGTTTTCTTTTTCATGCCTAGAACA  594

seq1  CTGTAGAAGGGCTTGTTAAATGAATCAATGAGTGAATTTGTCAATCATTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAAGGGCTTGTTAAATGAATCAATGAGTGAATTTGTCAATCATTA  644

seq1  AAGAAGTGAAGTATTTGATCTACAGCAGCACTACTGGCCAGGGCACAAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTGAAGTATTTGATCTACAGCAGCACTACTGGCCAGGGCACAAGG  694

seq1  CTGCCAGTGCCAAAGCTACATCTCTGCTTGATGTTTCCATTTGATTTTTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGTGCCAAAGCTACATCTCTGCTTGATGTTTCCATTTGATTTTTA  744

seq1  TTAAGACCAGAGGCATAGTATGGAAAAGAATCAAAGTGGTCACTAATCTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACCAGAGGCATAGTATGGAAAAGAATCAAAGTGGTCACTAATCTC  794

seq1  CCTGAAAAATCCTAATTTTTCCTGCCAATTGTTTTACTGAGTCTTCTGAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAAATCCTAATTTTTCCTGCCAATTGTTTTACTGAGTCTTCTGAC  844

seq1  GGCTCGCCAGTGTAACCCATGAAAACTCATAAAGACACCAGAACACCAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGCCAGTGTAACCCATGAAAACTCATAAAGACACCAGAACACCAAG  894

seq1  AATCCTGCCCCAACTTGCCCTAAAGCACTGAACTTACCAAAGAAGAAAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGCCCCAACTTGCCCTAAAGCACTGAACTTACCAAAGAAGAAAAT  944

seq1  GAAAAGTCTCTCACATACAACGACAGGAATTATCAAAGTAAGCTGAGAGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTCTCTCACATACAACGACAGGAATTATCAAAGTAAGCTGAGAGT  994

seq1  TGACCTAGACAAATACATTTTTCTCAGAATTCAAAATGGGAACAAAAGTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTAGACAAATACATTTTTCTCAGAATTCAAAATGGGAACAAAAGTT  1044

seq1  AAACAGCATTAAATATCATTCACTGGCTTTGATGATATGTCTGTTCTCCC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCATTAAATATCATTCACTGGCTTTGATGATATGTCTGTTCTCCC  1094

seq1  CAGGCTTGGTACCAGATGCCATTAATATACATCGAGGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTGGTACCAGATGCCATTAATATACATCGAGGAATTC  1136


seq1: chr8_8270549_8271641
seq2: B6Ng01-085E21.g_71_1162

seq1  GAATTCATTCCAGGCTGTAATATAAAGCTGTGGGTTAAGCCGTACTCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCAGGCTGTAATATAAAGCTGTGGGTTAAGCCGTACTCCAA  50

seq1  GGTCCACCACAAGCACACAAAGTTTATTTAGTTCTTTGTTTTTGTTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCACCACAAGCACACAAAGTTTATTTAGTTCTTTGTTTTTGTTTTTG  100

seq1  TTTTTGTTTCTTAAACCTCCTTTCAGTTTTCTCTACTTCTCTCTTTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTCTTAAACCTCCTTTCAGTTTTCTCTACTTCTCTCTTTGCCT  150

seq1  TTTATGTATGTGTGCATGCAGTACTGATTTTTTTCTCTTCATATTTCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTATGTGTGCATGCAGTACTGATTTTTTTCTCTTCATATTTCAAG  200

seq1  TGATTTATCTTGAAAGGGAATCTAACTTTGTAAAATCTCTGTGGATTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTATCTTGAAAGGGAATCTAACTTTGTAAAATCTCTGTGGATTCAC  250

seq1  AGCAATAAGCAAGAAAGCAACTGGGCAATCCCTTTATACTGTCAATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAAGCAAGAAAGCAACTGGGCAATCCCTTTATACTGTCAATATTT  300

seq1  ATTTATGTCTAAATTTTGTTGACTGAGTGGTGTCGTTTCGAAGCCTTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTCTAAATTTTGTTGACTGAGTGGTGTCGTTTCGAAGCCTTTAG  350

seq1  GGCAGAGCTCCTGTGCAATTTGCTTTGTTTATTTATTAGTATGCCAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGCTCCTGTGCAATTTGCTTTGTTTATTTATTAGTATGCCAGCAC  400

seq1  ATGTCTACAAAGAGCTACAGTGGTTTCAGAATGTTATTCGTAAAACCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTACAAAGAGCTACAGTGGTTTCAGAATGTTATTCGTAAAACCAAC  450

seq1  TCACACCTTTATAATTATCACATTTGGGGAAAGTTTTGTTATTGTCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCTTTATAATTATCACATTTGGGGAAAGTTTTGTTATTGTCCAGA  500

seq1  TGGCTATCATTTACGTCTAATTTTGTAGAAATGGGGGCACACTATCAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATCATTTACGTCTAATTTTGTAGAAATGGGGGCACACTATCAAAT  550

seq1  TTCAGAATACTGTGTTAAACATGATCCACTTAGAAATTATTCTTTTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATACTGTGTTAAACATGATCCACTTAGAAATTATTCTTTTCTCT  600

seq1  GCTGCCAAAATGGTAATACTTCACTGAGCTCAATGTATTAATAATGGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCAAAATGGTAATACTTCACTGAGCTCAATGTATTAATAATGGATG  650

seq1  ACTTAATAAAATTTGAGGAATATAAATAATTAACATTAATGATAATGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATAAAATTTGAGGAATATAAATAATTAACATTAATGATAATGTTA  700

seq1  GTTTTATATTCTTCAATATATAACTACTCAGTAGTTTAGTAAAATGGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATATTCTTCAATATATAACTACTCAGTAGTTTAGTAAAATGGAGA  750

seq1  AGATTTATAGGATTTGGAGAAAACCCATACTATTGCATTTTATTTTTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATAGGATTTGGAGAAAACCCATACTATTGCATTTTATTTTTATA  800

seq1  AAATTGAACATATGCATAAAGCTATTATAAAGG-TACTTGGTGACAAGTT  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAATTGAACATATGCATAAAGCTATTATAAAGGTTACTTGGTGACAAGTT  850

seq1  TAAGATATTATAATGCAATTCAGGGATTAGATGCAATCATTAATGTCAGC  899
      ||||||||||| |||||||||| |||||||||||||||||||||||||||
seq2  TAAGATATTATTATGCAATTCA-GGATTAGATGCAATCATTAATGTCAGC  899

seq1  TATGTTTAAGGAGAACATATCATTTTGTGTGTCTTGGGGAAATTGTGAAT  949
      ||||||||||||||||||||||||||||||||||| ||| ||||||||||
seq2  TATGTTTAAGGAGAACATATCATTTTGTGTGTCTTTGGGGAATTGTGAAT  949

seq1  AA-TCAAATTAAAATGCAATTATGTTTAAATATTTCCTCGGGGGAAAATT  998
      || |||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AATTCAAATTAAAATGCAATTATGTTTAAATATTT-CTCGGGGGAAAATT  998

seq1  GTTTTTACTCAGTAGGTGGGATTGTGGACTAGGGCTACAATGCTGAGCCA  1048
      | |||||||||||||||||||||| ||||||||||||| ||||||||| |
seq2  G-TTTTACTCAGTAGGTGGGATTGGGGACTAGGGCTACTATGCTGAGCTA  1047

seq1  TGTTATGATGTTTAATGACC-ATGGAAATAAGAAGGAAAAAATGAG  1093
      ||||||||||||  |||||| |||| ||| ||||||||||||||||
seq2  TGTTATGATGTTCTATGACCTATGG-AATTAGAAGGAAAAAATGAG  1092


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