BAC Information

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BAC

Clone NameB6Ng01-085J24
Chromosome8 (Build37)
Map Location 32,981,335 - 32,982,492
singlet/doubletsinglet
Overlap geneNrg1
Upstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329, EG330731, LOC100041340
Downstream gene2010007E15Rik, EG666589, EG546052
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085J24.bB6Ng01-085J24.g
ACCDH899251DH899252
length1,1241,172
definitionDH899251|Mus musculus domesticus DNA, BAC clone: B6Ng01-085J24, 5' end.DH899252|Mus musculus domesticus DNA, BAC clone: B6Ng01-085J24, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccgtgtcttattttgcccctactgtctgatagtcaatagaacatg
ttcaaccatttctgcgttggaaaacatctctcccacatagtattcttcga
gtcttagcacgggcaagctcatatgcaccatttgcagacagactttattg
gccctcctacatttagtcaaccattcattagctgatgactaataaaagat
ataccatgtctcatctctcatcaatgaaattggtaatgtttggagacaga
gatgtttaaatgcctgtcatttttgatctatggtcactgggatgtgcctt
gtagggagagtaaaaacactggttggacttaataaaacttggagatgttt
ctattgttgggtatgtttaatataatctgaacacccaaagaactcgaact
taaaaatacatttaataaaatatagatttctagtaatagcaaaaagcatg
atgatcagtaacttctcttatgcttaacaaaaaaatgcttaaatcaaatg
aggtggatagaagaagaaaatcaatacagagcattaaatacttttcccat
tttagaggagatcctctctttgtcttttacccagtcaaaaccaattcatt
agcattaggttcttgaaattaatgtaatactccatgttctgtaacaatca
taccacttcttaaaaatgaaaatcgttgactacctgaagctgctaggctt
gatatggagtttaaatcagaataagagagcatcagatttagaagaaacca
tgaatagctggaagttcagctccatctttagggctctaaagaaccctttc
tacatactgtcaatctgtgatttggttttttaagttcctgcctattgagc
cttacccattttgtctttgacatagctctagaatcattttgaatattcac
tagaatataatgttcccatagtttgtattagatggacccagtttctacct
gttacagatataaaccatgttgacttgcatctagctcaaattactattcc
catgccgatcagcagtatggcactaatcagtgctttcattttctaactga
gactatcaaagtctctgcctctaaatcgcgaggcactgcttctgcttcct
gtcgaagatggctatgaccgttgg
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactctccatggttggtgg
gattgcaagcttgtacaaccactctggaaatcagtctggcggttccttag
aaaattggacatagtactaccggaggatccagcaatacctcttctgggca
tatatccagaagatgtcccaaccggtatgaaggacacatgctccactatg
ttcatagcagccttatttataatagccagaagctggaaagaacccagatg
cccctcaacagaggaatggatacagaaaatgtggtacatttacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaattcctaggcaaa
tggatggacctggagggcatcatcctgagcgaggtaacccaatcacaaag
gaactcacacaatatgtactcactgataagtggatattagcccagaaact
taggatacccaagatataagatacaatttgccaaatgcatgaaactctag
aagaatgaagaccaaagtgtggactctgtgccccttcttagaattgggaa
caaaacacctatggaaggagttacagagacaaagtttggagctgcaacaa
aaggatggaccatctagagactgccttatctagggttccaccccataatc
agcttccaaacgctgacaccattgcatacactatcaagattttgccgaaa
ggacccagacatagctgtctcttgtgagactaggccggggcctagcaaac
acataagtggatgctcacagtcagctattggatggatcacacagccccat
ggaggagctagagaaagtacccaaagagctaaagagatctgcaaccctgt
aggtgcaacatatgattaccagtacccttgagctcttgactctagctact
aatgtatcaaagatggctagtcggcatcacttgaaagaaggcccattgga
cacactcctttattgccagtcatggaatgcatgcaaaaaatgccaatgaa
tgtgtatgggatagtgggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_32981335_32982492
seq2: B6Ng01-085J24.b_48_1171 (reverse)

seq1  CCAACGGGGCCCCATAGCACAATCTTCTGACAGGAAAGAGCAGGAAAGAC  50
      |||||||     |||||  | |||||| |||||||   |||||  ||| |
seq2  CCAACGG----TCATAG--CCATCTTC-GACAGGA---AGCAG--AAG-C  37

seq1  AGTGCCCTCTGCCGATTTAGAGGGCAGAGAACTTTTTGATAAGGTCCTCA  100
      |||||   ||  ||||||||| ||||||||    |||||||  || ||||
seq2  AGTGC---CTCGCGATTTAGA-GGCAGAGA---CTTTGATA--GT-CTCA  77

seq1  AGTTTTAGAAAATGAAAAGCACCTGATTAGTGCCATACTGCTGATCGGCA  150
          |||||||||| |||||| ||||||||||||||||||||||||||||
seq2  ---GTTAGAAAATG-AAAGCA-CTGATTAGTGCCATACTGCTGATCGGCA  122

seq1  TGGGGAAATAGGTAATTTTGAGGCTAGATGCAAGTCAAACATGGTTTATA  200
      ||||  |||| |||| ||||| |||||||||||||| |||||||||||||
seq2  TGGG--AATA-GTAA-TTTGA-GCTAGATGCAAGTC-AACATGGTTTATA  166

seq1  TCTGTAACAGGTAGAAACTGGGTCCATCTAATACAAACTATGGGAACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAACAGGTAGAAACTGGGTCCATCTAATACAAACTATGGGAACATT  216

seq1  ATATTCTAGTGAATATTCAAAATGATTCTAGAGCTATGTCAAAGACAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTAGTGAATATTCAAAATGATTCTAGAGCTATGTCAAAGACAAAA  266

seq1  TGGGTAAGGCTCAATAGGCAGGAACTTAAAAAACCAAATCACAGATTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAGGCTCAATAGGCAGGAACTTAAAAAACCAAATCACAGATTGAC  316

seq1  AGTATGTAGAAAGGGTTCTTTAGAGCCCTAAAGATGGAGCTGAACTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTAGAAAGGGTTCTTTAGAGCCCTAAAGATGGAGCTGAACTTCCA  366

seq1  GCTATTCATGGTTTCTTCTAAATCTGATGCTCTCTTATTCTGATTTAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTCATGGTTTCTTCTAAATCTGATGCTCTCTTATTCTGATTTAAAC  416

seq1  TCCATATCAAGCCTAGCAGCTTCAGGTAGTCAACGATTTTCATTTTTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATCAAGCCTAGCAGCTTCAGGTAGTCAACGATTTTCATTTTTAAG  466

seq1  AAGTGGTATGATTGTTACAGAACATGGAGTATTACATTAATTTCAAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTATGATTGTTACAGAACATGGAGTATTACATTAATTTCAAGAAC  516

seq1  CTAATGCTAATGAATTGGTTTTGACTGGGTAAAAGACAAAGAGAGGATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCTAATGAATTGGTTTTGACTGGGTAAAAGACAAAGAGAGGATCT  566

seq1  CCTCTAAAATGGGAAAAGTATTTAATGCTCTGTATTGATTTTCTTCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAAAATGGGAAAAGTATTTAATGCTCTGTATTGATTTTCTTCTTCT  616

seq1  ATCCACCTCATTTGATTTAAGCATTTTTTTGTTAAGCATAAGAGAAGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCTCATTTGATTTAAGCATTTTTTTGTTAAGCATAAGAGAAGTTA  666

seq1  CTGATCATCATGCTTTTTGCTATTACTAGAAATCTATATTTTATTAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCATCATGCTTTTTGCTATTACTAGAAATCTATATTTTATTAAATG  716

seq1  TATTTTTAAGTTCGAGTTCTTTGGGTGTTCAGATTATATTAAACATACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAAGTTCGAGTTCTTTGGGTGTTCAGATTATATTAAACATACCC  766

seq1  AACAATAGAAACATCTCCAAGTTTTATTAAGTCCAACCAGTGTTTTTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAGAAACATCTCCAAGTTTTATTAAGTCCAACCAGTGTTTTTACT  816

seq1  CTCCCTACAAGGCACATCCCAGTGACCATAGATCAAAAATGACAGGCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTACAAGGCACATCCCAGTGACCATAGATCAAAAATGACAGGCATT  866

seq1  TAAACATCTCTGTCTCCAAACATTACCAATTTCATTGATGAGAGATGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATCTCTGTCTCCAAACATTACCAATTTCATTGATGAGAGATGAGA  916

seq1  CATGGTATATCTTTTATTAGTCATCAGCTAATGAATGGTTGACTAAATGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTATATCTTTTATTAGTCATCAGCTAATGAATGGTTGACTAAATGT  966

seq1  AGGAGGGCCAATAAAGTCTGTCTGCAAATGGTGCATATGAGCTTGCCCGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGCCAATAAAGTCTGTCTGCAAATGGTGCATATGAGCTTGCCCGT  1016

seq1  GCTAAGACTCGAAGAATACTATGTGGGAGAGATGTTTTCCAACGCAGAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGACTCGAAGAATACTATGTGGGAGAGATGTTTTCCAACGCAGAAA  1066

seq1  TGGTTGAACATGTTCTATTGACTATCAGACAGTAGGGGCAAAATAAGACA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGAACATGTTCTATTGACTATCAGACAGTAGGGGCAAAATAAGACA  1116

seq1  CGGAATTC  1158
      ||||||||
seq2  CGGAATTC  1124