BAC Information

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BAC

Clone NameB6Ng01-086E09
Chromosome8 (Build37)
Map Location 50,266,623 - 50,434,088
singlet/doubletdoublet
Overlap genenone
Upstream geneOdz3, 2900073C17Rik, LOC100039866
Downstream gene4930555F03Rik, LOC100039919, EG667495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086E09.bB6Ng01-086E09.g
ACCDH899717DH899718
length1,2371,149
definitionDH899717|Mus musculus domesticus DNA, BAC clone: B6Ng01-086E09, 5' end.DH899718|Mus musculus domesticus DNA, BAC clone: B6Ng01-086E09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,266,623 - 50,267,899)(50,432,931 - 50,434,088)
sequence
gaattctttacatgcattattccattccagttatttacaaagaaggggac
atgggcttaaaaaggcattgcctgaacgtaactgcagctatgtgtttctt
ccactgggaaagtcccagtgcatttggtacttagggcaaatcttaatgtg
gctttcatattcctgggagagaaatgagaggagactaagctgtttttgca
aaaactggataggcaaagtgtcaggatgagaaactttcctgggataattt
catgtcaacataaatgtcatcaatgagaattggagaaaggaaaccagatg
tgagaggttgtaaaaatggaaacttctgactccatattgcttcagaattc
agcccgactgcatcaccacattggagctttctcctcaagggtctgctgca
aatggctcacatgtgcagtggaaaaaaagtcatctcttagcttcaggaag
agagaagctaggctatcaagaggcatgcacactcatacatgcatgcacac
acacatattcgcacaaactcatactcacacacatacacataaacacacag
ccatacacatatatgcacatatgcaaacacatacacacaggcacactcgt
acacacacacacacacacacacacacatatgcatacacacactcaaatac
aagtttgttagtaaagtttaaacattaaatgtggaaaaacacaagttgtg
aatggaaatctgaatattatgaacagaatctgcagtctgtggatcaggaa
aatcccccctgaggtcacaagttttagcttttactttttgaaggaaggca
gatggatagaggtcttggggggtgttgataggctaaggcagaaccttcca
gattggcttcacaaacatggtttatagcaaagacttgcactagaggggga
tagcatccaatgtggtatgtacttcaagagcagtgtccaatatgccaaca
gatagaagtagaaattagcaggtaggttatggacacacgagaaaagagta
tatggaggtttaatatcctggttggtttggtttaaatttgggtctcagta
agcctaagctggtctcaagatggtaggtagccagaatcgctggaattctg
tggctcatccttccaagtggatggtatatggcttgtagaacatcatgcct
gcaggaatgcttactgaatcacgggaaaaagtaatgagttaggtggtgaa
ttttaattgtacatgcagtagactatttttttgaggg
gaattccacttcaggggaaaaagtcaaaccaaaggactaagagacaaact
aaactgctggtcctgatcactattttcatctgcctgttaaaggccactca
atttttctaacccctgaaccttgatctctgacccccccagccaataggag
aattacaggaagccagagtgggaaagaagagtgtgtctgggacactaaat
attactcagggttctcccagatggattgtgggatgaactgtcccttgtgt
aaggccaggggtacccctgagtggccctttctacacttaaagctactttt
tgtaagtgttttgtaagtaagtgttccttacttttcagaactaaagctgt
ttgcttcaagtctttcacatgcctttagaaatagtcccttattaagcctt
cctctgtctctgcattgatatcagctgcttgtatttatcacatatgcata
caaatagtctgtggtttgttctttgaaaagttacattgactacccccacc
agacttcatagccgttttgtgtgactcaatctcaagttacaacatgcaca
cattaagcatagttgccagagcattagaaacatgtggatttgaacatgca
atttctgcaaatgttagctgctatttttgatattgctcagtcctttgcta
acgtcttatatagaaaattttatggtatggtttaaagaaagaagaaaaga
tttgaaggtacactacttagtcgtagatagttattacagagtaaataaaa
atccaacagtgtttcgattgtttttgcatttagttaaccctttcaataca
gacttaaatggaatgattgtagccaaaatttgttttcataagcatattaa
gatgatggaagagaaaagaaaagaaaaatgaataccagaggtcaaattgt
tagtaaacatgatgaactacatgtgaactttaacatggagaaaattattt
tgtattttaatttaattccatttataagcagagactactatataaagtga
ctctgtatcctttaagttcattttaagtgaaaagtttattgtttggtggt
gatttggtttgttttttatacttattatgtgctaagaagtcagtcctgtc
tacttcatccaaggccaggaaaaaaaaaaaaaaaactctcccttcaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_50266623_50267899
seq2: B6Ng01-086E09.b_44_1280

seq1  GAATTCTTTACATGCATTATTCCATTCCAGTTATTTACAAAGAAGGGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACATGCATTATTCCATTCCAGTTATTTACAAAGAAGGGGAC  50

seq1  ATGGGCTTAAAAAGGCATTGCCTGAACGTAACTGCAGCTATGTGTTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTTAAAAAGGCATTGCCTGAACGTAACTGCAGCTATGTGTTTCTT  100

seq1  CCACTGGGAAAGTCCCAGTGCATTTGGTACTTAGGGCAAATCTTAATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGGAAAGTCCCAGTGCATTTGGTACTTAGGGCAAATCTTAATGTG  150

seq1  GCTTTCATATTCCTGGGAGAGAAATGAGAGGAGACTAAGCTGTTTTTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCATATTCCTGGGAGAGAAATGAGAGGAGACTAAGCTGTTTTTGCA  200

seq1  AAAACTGGATAGGCAAAGTGTCAGGATGAGAAACTTTCCTGGGATAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGGATAGGCAAAGTGTCAGGATGAGAAACTTTCCTGGGATAATTT  250

seq1  CATGTCAACATAAATGTCATCAATGAGAATTGGAGAAAGGAAACCAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCAACATAAATGTCATCAATGAGAATTGGAGAAAGGAAACCAGATG  300

seq1  TGAGAGGTTGTAAAAATGGAAACTTCTGACTCCATATTGCTTCAGAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGTTGTAAAAATGGAAACTTCTGACTCCATATTGCTTCAGAATTC  350

seq1  AGCCCGACTGCATCACCACATTGGAGCTTTCTCCTCAAGGGTCTGCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCGACTGCATCACCACATTGGAGCTTTCTCCTCAAGGGTCTGCTGCA  400

seq1  AATGGCTCACATGTGCAGTGGAAAAAAAGTCATCTCTTAGCTTCAGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTCACATGTGCAGTGGAAAAAAAGTCATCTCTTAGCTTCAGGAAG  450

seq1  AGAGAAGCTAGGCTATCAAGAGGCATGCACACTCATACATGCATGCACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGCTAGGCTATCAAGAGGCATGCACACTCATACATGCATGCACAC  500

seq1  ACACATATTCGCACAAACTCATACTCACACACATACACATAAACACACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATTCGCACAAACTCATACTCACACACATACACATAAACACACAG  550

seq1  CCATACACATATATGCACATATGCAAACACATACACACAGGCACACTCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACACATATATGCACATATGCAAACACATACACACAGGCACACTCGT  600

seq1  ACACACACACACACACACACACACACATATGCATACACACACTCAAATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACATATGCATACACACACTCAAATAC  650

seq1  AAGTTTGTTAGTAAAGTTTAAACATTAAATGTGGAAAAACACAAGTTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGTTAGTAAAGTTTAAACATTAAATGTGGAAAAACACAAGTTGTG  700

seq1  AATGGAAATCTGAATATTATGAACAGAATCTGCAGTCTGTGGATCAGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAATCTGAATATTATGAACAGAATCTGCAGTCTGTGGATCAGGAA  750

seq1  AATCCCCCCTGAGGTCACAAGTTTTAGCTTTTACTTTTTGAAGGAAGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCCCTGAGGTCACAAGTTTTAGCTTTTACTTTTTGAAGGAAGGCA  800

seq1  GATGGATAGAGGTCTTGGGGGGTGTTGATAGGCTAAGGCAGAACCTTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATAGAGGTCTTGGGGGGTGTTGATAGGCTAAGGCAGAACCTTCCA  850

seq1  GATTGGCTTCACAAACATGGTTTATAGCAAAGACTTGCACTAGAGGGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGCTTCACAAACATGGTTTATAGCAAAGACTTGCACTAGAGGGGGA  900

seq1  TAGCATCCAATGTGGTATGTACTTCAAGAGCAGTGTCCAATATGCCAACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCCAATGTGGTATGTACTTCAAGAGCAGTGTCCAATATGCCAACA  950

seq1  GATAGAAGTAGAAAATTAGCAGGTAGGTTATGGACACACGAGAAAAAGAG  1000
      ||||||||||| |||||||||||||||||||||||||||||| |||||||
seq2  GATAGAAGTAG-AAATTAGCAGGTAGGTTATGGACACACGAG-AAAAGAG  998

seq1  TATATTGATGTTTAATATCTTGTTTTTGTTTTTGTTTTTTAAATTTGGGT  1050
      ||||| || |||||||||| ||   ||| ||| |   |||||||||||||
seq2  TATATGGAGGTTTAATATCCTG--GTTGGTTTGG---TTTAAATTTGGGT  1043

seq1  CTCAGT-AGCCTAGGCTGGTCTCAGAGTGGTAGGTAGCCAAGAATCGCTG  1099
      |||||| |||||| ||||||||||   |||||||||||| ||||||||||
seq2  CTCAGTAAGCCTAAGCTGGTCTCAAGATGGTAGGTAGCC-AGAATCGCTG  1092

seq1  GAATTCCTGTGCCTCATCCTTCCCAAGT-GATGGTATTATGGGCTTGTAA  1148
      ||||| ||||| ||||||||| |||||| ||||||| ||| ||||||| |
seq2  GAATT-CTGTGGCTCATCCTT-CCAAGTGGATGGTA-TAT-GGCTTGT-A  1137

seq1  GACCATCATGCCCTGCAGGATATGGTTTTTACCTGAATCACAGTGAAAAA  1198
      || ||||||| ||||||||| ||| ||     ||||||||| |     ||
seq2  GAACATCATG-CCTGCAGGA-ATGCTT----ACTGAATCACGG----GAA  1177

seq1  AAAGTAAATGAAGGTTTTTAGGTTGGTGATATTTTTATTTGTAACCAATG  1248
      ||||| |||||      ||||| |||||  | ||||| |||||    |||
seq2  AAAGT-AATGA-----GTTAGG-TGGTG--AATTTTAATTGTA---CATG  1215

seq1  CAGGTAGGATCTATTTTTTTTTTTGAGGG  1277
      || ||||   |||    ||||||||||||
seq2  CA-GTAG--ACTA----TTTTTTTGAGGG  1237

seq1: chr8_50432931_50434088
seq2: B6Ng01-086E09.g_67_1215 (reverse)

seq1  TATTGAAGGGAGAGTTTTTTTTTTTTTTTTTCCTGGCCTTAGATTGAGTA  50
      |||||||||||||| ||||||||||||||||||||||||| |||  ||||
seq2  TATTGAAGGGAGAG-TTTTTTTTTTTTTTTTCCTGGCCTTGGATGAAGTA  49

seq1  GACA-GACTGACTTCCTTAGCAACATAATAAAGTATTAAAAAAACAAACC  99
      |||| ||||||||| |||||| ||||||| ||||||  ||||||||||||
seq2  GACAGGACTGACTT-CTTAGC-ACATAAT-AAGTAT--AAAAAACAAACC  94

seq1  AAATCAACCAACCAAACAATAAACTTGTTCACTTAAAATGAACCTTAAAG  149
      ||||||  | |||||||||||||||| ||||||||||||||| |||||||
seq2  AAATCA--CCACCAAACAATAAACTT-TTCACTTAAAATGAA-CTTAAAG  140

seq1  GATACAGAGTCACTTTATATAGTAGTCTCTGCTTATAAATGGAATTAAAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGAGTCACTTTATATAGTAGTCTCTGCTTATAAATGGAATTAAAT  190

seq1  TAAAATACAAAATAATTTTCTCCATGTTAAAGTTCACATGTAGTTCATCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACAAAATAATTTTCTCCATGTTAAAGTTCACATGTAGTTCATCA  240

seq1  TGTTTACTAACAATTTGACCTCTGGTATTCATTTTTCTTTTCTTTTCTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACTAACAATTTGACCTCTGGTATTCATTTTTCTTTTCTTTTCTCT  290

seq1  TCCATCATCTTAATATGCTTATGAAAACAAATTTTGGCTACAATCATTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCATCTTAATATGCTTATGAAAACAAATTTTGGCTACAATCATTCC  340

seq1  ATTTAAGTCTGTATTGAAAGGGTTAACTAAATGCAAAAACAATCGAAACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGTCTGTATTGAAAGGGTTAACTAAATGCAAAAACAATCGAAACA  390

seq1  CTGTTGGATTTTTATTTACTCTGTAATAACTATCTACGACTAAGTAGTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGATTTTTATTTACTCTGTAATAACTATCTACGACTAAGTAGTGT  440

seq1  ACCTTCAAATCTTTTCTTCTTTCTTTAAACCATACCATAAAATTTTCTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAAATCTTTTCTTCTTTCTTTAAACCATACCATAAAATTTTCTAT  490

seq1  ATAAGACGTTAGCAAAGGACTGAGCAATATCAAAAATAGCAGCTAACATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACGTTAGCAAAGGACTGAGCAATATCAAAAATAGCAGCTAACATT  540

seq1  TGCAGAAATTGCATGTTCAAATCCACATGTTTCTAATGCTCTGGCAACTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAATTGCATGTTCAAATCCACATGTTTCTAATGCTCTGGCAACTA  590

seq1  TGCTTAATGTGTGCATGTTGTAACTTGAGATTGAGTCACACAAAACGGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAATGTGTGCATGTTGTAACTTGAGATTGAGTCACACAAAACGGCT  640

seq1  ATGAAGTCTGGTGGGGGTAGTCAATGTAACTTTTCAAAGAACAAACCACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTCTGGTGGGGGTAGTCAATGTAACTTTTCAAAGAACAAACCACA  690

seq1  GACTATTTGTATGCATATGTGATAAATACAAGCAGCTGATATCAATGCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTTGTATGCATATGTGATAAATACAAGCAGCTGATATCAATGCAG  740

seq1  AGACAGAGGAAGGCTTAATAAGGGACTATTTCTAAAGGCATGTGAAAGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGGAAGGCTTAATAAGGGACTATTTCTAAAGGCATGTGAAAGAC  790

seq1  TTGAAGCAAACAGCTTTAGTTCTGAAAAGTAAGGAACACTTACTTACAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCAAACAGCTTTAGTTCTGAAAAGTAAGGAACACTTACTTACAAA  840

seq1  ACACTTACAAAAAGTAGCTTTAAGTGTAGAAAGGGCCACTCAGGGGTACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTACAAAAAGTAGCTTTAAGTGTAGAAAGGGCCACTCAGGGGTACC  890

seq1  CCTGGCCTTACACAAGGGACAGTTCATCCCACAATCCATCTGGGAGAACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCTTACACAAGGGACAGTTCATCCCACAATCCATCTGGGAGAACC  940

seq1  CTGAGTAATATTTAGTGTCCCAGACACACTCTTCTTTCCCACTCTGGCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTAATATTTAGTGTCCCAGACACACTCTTCTTTCCCACTCTGGCTT  990

seq1  CCTGTAATTCTCCTATTGGCTGGGGGGGTCAGAGATCAAGGTTCAGGGGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAATTCTCCTATTGGCTGGGGGGGTCAGAGATCAAGGTTCAGGGGT  1040

seq1  TAGAAAAATTGAGTGGCCTTTAACAGGCAGATGAAAATAGTGATCAGGAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAATTGAGTGGCCTTTAACAGGCAGATGAAAATAGTGATCAGGAC  1090

seq1  CAGCAGTTTAGTTTGTCTCTTAGTCCTTTGGTTTGACTTTTTCCCCTGAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTTAGTTTGTCTCTTAGTCCTTTGGTTTGACTTTTTCCCCTGAA  1140

seq1  GTGGAATTC  1158
      |||||||||
seq2  GTGGAATTC  1149