BAC Information

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BAC

Clone NameB6Ng01-086O04
Chromosome8 (Build37)
Map Location 108,805,846 - 108,932,731
singlet/doubletdoublet
Overlap geneSmpd3
Upstream gene4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7
Downstream geneZfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086O04.bB6Ng01-086O04.g
ACCDH900164DH900165
length1,151966
definitionDH900164|Mus musculus domesticus DNA, BAC clone: B6Ng01-086O04, 5' end.DH900165|Mus musculus domesticus DNA, BAC clone: B6Ng01-086O04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,805,846 - 108,807,009)(108,932,040 - 108,932,731)
sequence
gaattcatcttttcttggaagcactggtaggaatgtcttatagtttagct
ccccctgggtaagatataagctccagagaaaacctgcttcttctccagct
atctgtccagctggggaaggtcttgagcaagtctcttaacctttgagcct
ccaacacccctcccctggaacattgagggatgatgcagggtcttggctcc
ccatgactaacatcaaaggaacttgtctattccagaacagggtgggaaga
aagaagcccatagttctaggttctattcaaagcgactctggattctccag
aggccctagttccaaaaggcctagtaccctggccttttctatcagagaaa
agatcctgccccaaccctatcctcaggacttcagcccagtggaaactgag
aagttatcttgctgacccggcctcttggaggagaccctgatccctagcct
tggaatcctgcctttttacccttgacaggtgggtgattcaagaacacggg
ctagcattcctctgtaagtgatcttataggagccaggctccacccgaccc
acagaagcctgtgtgactctcagcctctactccctttgggccatccttcc
caagacgtcaaggcagtcaggacctgaaaggagatgagctaaccagagtg
gtgacctgaacaatctctgaaactcaagctagccacggtgggaggtactc
actccagtctctcagtactgtccgtcaggtagtctttgccgtcctacagt
ttaccaaattgtcacccgacaactgcatagctccttcggtcccaaaattc
cctgcatgtattttccaagtagaactaaatgacaagagctggttctagga
aggggtttctgaagggaaatgaaatcttggtaaccttgacatttataggc
ccccttttcaagagaaaattctatgagataattgatattctgagccagac
cttgttttgaatgtgctctcccctgcccattcacaaactacaccctttct
tcctctttgaaatagggtcgtattcagtcagtatagaatggacaattcat
cagagccttcctctgccacttatatcccagcatactccaaggtaggggca
gatcagtcttgccaccccgttcagcgacattcatttagtacacaccagtt
g
gaattcacctccacaggtagcgtgtgtgtgatgctgggaagagagcacgg
ggctttgtgaacactagacaagctctctgctcactgaggtacacctctag
ccaccatggggtagatttcgaggacaaagagggtggctcagcagttaagt
ccattggctgttcttacagaagacccaggttcgattcccatcatggaggc
tcacaaccagtcccagcggagcctatggaatctaatgcccttttaagggc
ctcagaagcagcaggtacacacataacatatagatgtacatgcaggcaaa
acactcacataaaacattttaaaaaaacaacaaagggggcacagataaag
tacttaatagttatgtttaatgagtcatatttatagaccttcatacatat
gatcatatttaatttttttctctatgtagccctggctggcttggaactct
ctgtgtagatctctatgtagttctgtctcaaattcagagagatttacctg
cctctgcctcctgagtgctgggattaaaggtgtgtgactctattccagct
ttaaaattttatttaataaaataaactttattcttgtgttcatttcaaga
atatttttttttcagaacaaaatcaaatctccagtctccatgtgtctatg
ttttatttgtgcttccattgggtcttggttggaggagacattacttactg
tttataatatacttcttatctcctttacttcctacaagtgttccgtgtct
gaggatcagaaatcaaggatggggttcaaggatacaaaaagatactggca
taatcaagattcatggggaaactgttctaggctgagggttcagctatctg
ggagagtgaccagtgaggcagggtacataaaggttttcagccaccatccc
tcaaatctccattactgtgcacattttaaaatttttatattttaattatt
ttaacttaatctgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108805846_108807009
seq2: B6Ng01-086O04.b_45_1195

seq1  GAATTCATCTTTTCTTGGAAGCACTGGTAGGAATGTCTTATAGTTTAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTTTCTTGGAAGCACTGGTAGGAATGTCTTATAGTTTAGCT  50

seq1  CCCCCTGGGTAAGATATAAGCTCCAGAGAAAACCTGCTTCTTCTCCAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGGGTAAGATATAAGCTCCAGAGAAAACCTGCTTCTTCTCCAGCT  100

seq1  ATCTGTCCAGCTGGGGAAGGTCTTGAGCAAGTCTCTTAACCTTTGAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCCAGCTGGGGAAGGTCTTGAGCAAGTCTCTTAACCTTTGAGCCT  150

seq1  CCAACACCCCTCCCCTGGAACATTGAGGGATGATGCAGGGTCTTGGCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACCCCTCCCCTGGAACATTGAGGGATGATGCAGGGTCTTGGCTCC  200

seq1  CCATGACTAACATCAAAGGAACTTGTCTATTCCAGAACAGGGTGGGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACTAACATCAAAGGAACTTGTCTATTCCAGAACAGGGTGGGAAGA  250

seq1  AAGAAGCCCATAGTTCTAGGTTCTATTCAAAGCGACTCTGGATTCTCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCCCATAGTTCTAGGTTCTATTCAAAGCGACTCTGGATTCTCCAG  300

seq1  AGGCCCTAGTTCCAAAAGGCCTAGTACCCTGGCCTTTTCTATCAGAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTAGTTCCAAAAGGCCTAGTACCCTGGCCTTTTCTATCAGAGAAA  350

seq1  AGATCCTGCCCCAACCCTATCCTCAGGACTTCAGCCCAGTGGAAACTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTGCCCCAACCCTATCCTCAGGACTTCAGCCCAGTGGAAACTGAG  400

seq1  AAGTTATCTTGCTGACCCGGCCTCTTGGAGGAGACCCTGATCCCTAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATCTTGCTGACCCGGCCTCTTGGAGGAGACCCTGATCCCTAGCCT  450

seq1  TGGAATCCTGCCTTTTTACCCTTGACAGGTGGGTGATTCAAGAACACGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCCTGCCTTTTTACCCTTGACAGGTGGGTGATTCAAGAACACGGG  500

seq1  CTAGCATTCCTCTGTAAGTGATCTTATAGGAGCCAGGCTCCACCCGACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATTCCTCTGTAAGTGATCTTATAGGAGCCAGGCTCCACCCGACCC  550

seq1  ACAGAAGCCTGTGTGACTCTCAGCCTCTACTCCCTTTGGGCCATCCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGCCTGTGTGACTCTCAGCCTCTACTCCCTTTGGGCCATCCTTCC  600

seq1  CAAGACGTCAAGGCAGTCAGGACCTGAAAGGAGATGAGCTAACCAGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACGTCAAGGCAGTCAGGACCTGAAAGGAGATGAGCTAACCAGAGTG  650

seq1  GTGACCTGAACAATCTCTGAAACTCAAGCTAGCCACGGTGGGAGGTACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTGAACAATCTCTGAAACTCAAGCTAGCCACGGTGGGAGGTACTC  700

seq1  ACTCCAGTCTCTCAGTACTGTCCGTCAGGTAGTCTTTGCCGTCCTACAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGTCTCTCAGTACTGTCCGTCAGGTAGTCTTTGCCGTCCTACAGT  750

seq1  TTACCAAATTGTCACCCGACAACTGCATAGCTCCTTCGGTCCCAAAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAAATTGTCACCCGACAACTGCATAGCTCCTTCGGTCCCAAAATTC  800

seq1  CCTGCATGTATTTTCCAAGTAGAACTAAATGACAAGAGCTGGTTCTAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATGTATTTTCCAAGTAGAACTAAATGACAAGAGCTGGTTCTAGGA  850

seq1  AGGGGTTTCTGAAGGGAAATGAAATCTTGGTAACCTTGACATTTATAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTTCTGAAGGGAAATGAAATCTTGGTAACCTTGACATTTATAGGC  900

seq1  CCCCTTTTCAAAGAGAAAATTCTATGAGATAATTGATATTCTGAGCCAGA  950
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTTC-AAGAGAAAATTCTATGAGATAATTGATATTCTGAGCCAGA  949

seq1  CCTTGTTTTGAAATGTGCTCTCCCCTGCCCATTCACAAACTACACCCTTT  1000
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTTTG-AATGTGCTCTCCCCTGCCCATTCACAAACTACACCCTTT  998

seq1  CTTCCTCTTTGAAAATAGGGTCGTATCAAGTCAAGTAATAGAAATGGGAA  1050
      ||||||||||| ||||||||||||||  |||| ||| |||| |||||  |
seq2  CTTCCTCTTTG-AAATAGGGTCGTATTCAGTC-AGT-ATAG-AATGG--A  1042

seq1  CAATTCAATCAGAGCCTTCCTCTGCCAACTATATCCCAGCATACTCCCAG  1100
      |||||| ||||||||||||||||||||  |||||||||||||||||| ||
seq2  CAATTC-ATCAGAGCCTTCCTCTGCCACTTATATCCCAGCATACTCCAAG  1091

seq1  GTAGGGGCAGAATCAGTTCTTGCCCCAACCCCCGTCAGCGACA-TCATTT  1149
      |||||||||| ||||| |||||||   |||||  ||||||||| ||||||
seq2  GTAGGGGCAG-ATCAG-TCTTGCC---ACCCCGTTCAGCGACATTCATTT  1136

seq1  AGTACACACCAGTTG  1164
      |||||||||||||||
seq2  AGTACACACCAGTTG  1151

seq1: chr8_108932040_108932731
seq2: B6Ng01-086O04.g_340_1035 (reverse)

seq1  CAACAGA-TAAGT--AAATAATTAAAATATAAAAATTTTAAAATGTGCAC  47
      | ||||| |||||  |||||||||||||||||||||||||||||||||||
seq2  CCACAGATTAAGTTAAAATAATTAAAATATAAAAATTTTAAAATGTGCAC  50

seq1  AGTAATGGAGATTTGAGGGATGGTGGCTGAAAACC-TTATGTACCCTGCC  96
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGTAATGGAGATTTGAGGGATGGTGGCTGAAAACCTTTATGTACCCTGCC  100

seq1  TCACTGGTCACTCTCCCAGATAGCTGAACCCTCAGCCTAGAACAGTTTCC  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGTCACTCTCCCAGATAGCTGAACCCTCAGCCTAGAACAGTTTCC  150

seq1  CCATGAATCTTGATTATGCCAGTATCTTTTTGTATCCTTGAACCCCATCC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAATCTTGATTATGCCAGTATCTTTTTGTATCCTTGAACCCCATCC  200

seq1  TTGATTTCTGATCCTCAGACACGGAACACTTGTAGGAAGTAAAGGAGATA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTCTGATCCTCAGACACGGAACACTTGTAGGAAGTAAAGGAGATA  250

seq1  AGAAGTATATTATAAACAGTAAGTAATGTCTCCTCCAACCAAGACCCAAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTATATTATAAACAGTAAGTAATGTCTCCTCCAACCAAGACCCAAT  300

seq1  GGAAGCACAAATAAAACATAGACACATGGAGACTGGAGATTTGATTTTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCACAAATAAAACATAGACACATGGAGACTGGAGATTTGATTTTGT  350

seq1  TCTGAAAAAAAAATATTCTTGAAATGAACACAAGAATAAAGTTTATTTTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAAAAAAATATTCTTGAAATGAACACAAGAATAAAGTTTATTTTA  400

seq1  TTAAATAAAATTTTAAAGCTGGAATAGAGTCACACACCTTTAATCCCAGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAAATTTTAAAGCTGGAATAGAGTCACACACCTTTAATCCCAGC  450

seq1  ACTCAGGAGGCAGAGGCAGGTAAATCTCTCTGAATTTGAGACAGAACTAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGAGGCAGAGGCAGGTAAATCTCTCTGAATTTGAGACAGAACTAC  500

seq1  ATAGAGATCTACACAGAGAGTTCCAAGCCAGCCAGGGCTACATAGAGAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGATCTACACAGAGAGTTCCAAGCCAGCCAGGGCTACATAGAGAAA  550

seq1  AAAATTAAATATGATCATATGTATGAAGGTCTATAAATATGACTCATTAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAATATGATCATATGTATGAAGGTCTATAAATATGACTCATTAA  600

seq1  ACATAACTATTAAGTACTTTATCTGTGCCCCCTTTGTTGTTTTTTTAAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACTATTAAGTACTTTATCTGTGCCCCCTTTGTTGTTTTTTTAAAA  650

seq1  TGTTTTATGTGAGTGTTTTGCCTGCATGTACATCTATATGTTATGT  692
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATGTGAGTGTTTTGCCTGCATGTACATCTATATGTTATGT  696