BAC Information

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BAC

Clone NameB6Ng01-087H08
Chromosome8 (Build37)
Map Location 52,455,580 - 52,558,825
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039954, LOC100039966, LOC667517
Downstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087H08.bB6Ng01-087H08.g
ACCDH900580DH900581
length1,1081,173
definitionDH900580|Mus musculus domesticus DNA, BAC clone: B6Ng01-087H08, 5' end.DH900581|Mus musculus domesticus DNA, BAC clone: B6Ng01-087H08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,455,580 - 52,456,695)(52,557,638 - 52,558,825)
sequence
gaattcattattattatgtgttttgggtatacttaaaactatttgcaaaa
atcaagctgccaatttagtcctgctgagatattaaagttacaattttctt
caatgtacaatttcttcaaaaacactctagatcctttgtatatataaaaa
aatatttacacatcattgttgctgtagtcatgtgtgaaatttatctaatt
agaagaataatgattccagggtcaagtccaggataatggcaatttcacag
actaactctttaaaagtgctccttttctctcaggccatcttgtagaagac
aataattataattttatacattcagaaaaaaattacttcagatagaaaac
tttgaagagaggactgtaaaaataatctatgccatgataatatggtcaca
aattgcctggttcttgctgaggggtaggtagcttgtgctctttatagccc
ttctgggaaatactcagattcattttattagacggcttcattattcactg
tagataaacatcctagataaaatatatttgatctaaaaaagtacacattt
atagtattgaggacacataataaaatgtttcacattaataatgcattaat
aaatgacatttaatatattccactgtatgctatacactgggtaacatgtt
ttacgtggatttaactctcatcttttattgcatattatcttcaatactat
atatatgtgagaattaagaaagctctatttgttagtgtattatttcctct
tttaggatgtaattaaagcaggtaatgtttaaattattgacctgggatca
cagcctttaaacaggatgaatccaaggctttatacctcactgtagtaaca
tatcttgaattcctcatgtctgctagagctctctttcttatttctgcatg
tgaagcaattggttttgtaacccatgacattgagtttccttatctgtaat
agtagaaaattttactatcattctctatagggatactgaaggatggagtc
ggctatcacagaggggagtacttagcaggggaaacattttcatcttagca
gtcagagcagagacttgtgaccatgagagcgaaatgaatatatatatata
taatatat
gaattctgggtatttttctcggtattgcattgatttttatggatttatta
tttgacaaatttgtatcagaacatagtccattctgtttacattcatgtcc
ctgtgacttcttccttcttgccttgggtctcttcccatcactcatgcctt
tatactttgttctgtgatgcactaatttaatcaggagttctgtaaatcca
tggatagaatttccatttagtaaacaagtaaaggcaatgactgtggattg
ctagactctttcatttgtcaactcttcttaagagagggttaggaccccat
ttatgccctgcaacccatgattagatactgataggccaattcatatgaag
gccagatattagtatggagatcagattttcagtggcattgttaatgccct
gaatataacatttcagtcattacctttggttttcacccttaaaatctttc
tgtttcctcttccccaatgtttcttgaaccttagagaggtacaacttttt
gcttagggcagagttttagtctgcagtttattctaagtatctcaaacaag
gataagtctctgtattcatcatgcttctttgcaatgtgtagtttctctta
ctaaaaattaaactaacacttgtccaggggtaaaaacataactacttaga
ggtcagctttctgccagtttagcttagccaaagtgcttagttctacctct
gaccagaaaggcaaggttttcaagtaatttatttatcagtcatttatttc
catgtggaatgggcctcaaatccagtcatggaaagatgggccacatgaat
ggatgtaaaaataaataaatgaagtcctggtcaagaaatcgagaacaaca
cagaaatgttattcggaaagacagagaaacacgggtgtaaaaagtaagga
caactaaaacaacattaggccaatttataacctcattatcattatcggag
tagaaatgagagttcaacagtcttcatttcatgagttcatccatgactac
ttgaattatagtgccaataaatttcattgttctaaagtagcttctttgaa
agcagatggaaataataatacatatttgtggaggaagtacaaaaatgtca
tgatatagagagagataaaaaagtatttggcaaaggtgagtctcaaaatc
gtttagtgagaagtcgaaggatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_52455580_52456695
seq2: B6Ng01-087H08.b_44_1151

seq1  GAATTCATTATTATTATGTGTTTTGGGTATACTTAAAACTATTTGCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATTATTATGTGTTTTGGGTATACTTAAAACTATTTGCAAAA  50

seq1  ATCAAGCTGCCAATTTAGTCCTGCTGAGATATTAAAGTTACAATTTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGCTGCCAATTTAGTCCTGCTGAGATATTAAAGTTACAATTTTCTT  100

seq1  CAATGTACAATTTCTTCAAAAACACTCTAGATCCTTTGTATATATAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTACAATTTCTTCAAAAACACTCTAGATCCTTTGTATATATAAAAA  150

seq1  AATATTTACACATCATTGTTGCTGTAGTCATGTGTGAAATTTATCTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTACACATCATTGTTGCTGTAGTCATGTGTGAAATTTATCTAATT  200

seq1  AGAAGAATAATGATTCCAGGGTCAAGTCCAGGATAATGGCAATTTCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAATAATGATTCCAGGGTCAAGTCCAGGATAATGGCAATTTCACAG  250

seq1  ACTAACTCTTTAAAAGTGCTCCTTTTCTCTCAGGCCATCTTGTAGAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACTCTTTAAAAGTGCTCCTTTTCTCTCAGGCCATCTTGTAGAAGAC  300

seq1  AATAATTATAATTTTATACATTCAGAAAAAAATTACTTCAGATAGAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTATAATTTTATACATTCAGAAAAAAATTACTTCAGATAGAAAAC  350

seq1  TTTGAAGAGAGGACTGTAAAAATAATCTATGCCATGATAATATGGTCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGAGAGGACTGTAAAAATAATCTATGCCATGATAATATGGTCACA  400

seq1  AATTGCCTGGTTCTTGCTGAGGGGTAGGTAGCTTGTGCTCTTTATAGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCTGGTTCTTGCTGAGGGGTAGGTAGCTTGTGCTCTTTATAGCCC  450

seq1  TTCTGGGAAATACTCAGATTCATTTTATTAGACGGCTTCATTATTCACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGAAATACTCAGATTCATTTTATTAGACGGCTTCATTATTCACTG  500

seq1  TAGATAAACATCCTAGATAAAATATATTTGATCTAAAAAAGTACACATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAAACATCCTAGATAAAATATATTTGATCTAAAAAAGTACACATTT  550

seq1  ATAGTATTGAGGACACATAATAAAATGTTTCACATTAATAATGCATTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATTGAGGACACATAATAAAATGTTTCACATTAATAATGCATTAAT  600

seq1  AAATGACATTTAATATATTCCACTGTATGCTATACACTGGGTAACATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACATTTAATATATTCCACTGTATGCTATACACTGGGTAACATGTT  650

seq1  TTACGTGGATTTAACTCTCATCTTTTATTGCATATTATCTTCAATACTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGTGGATTTAACTCTCATCTTTTATTGCATATTATCTTCAATACTAT  700

seq1  ATATATGTGAGAATTAAGAAAGCTCTATTTGTTAGTGTATTATTTCCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTGAGAATTAAGAAAGCTCTATTTGTTAGTGTATTATTTCCTCT  750

seq1  TTTAGGATGTAATTAAAGCAGGTAATGTTTAAATTATTGACCTGGGATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGATGTAATTAAAGCAGGTAATGTTTAAATTATTGACCTGGGATCA  800

seq1  CAGCCTTTAAACAGGATGAATCCAAGGCTTTATACCTCACTGTAGTAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTTAAACAGGATGAATCCAAGGCTTTATACCTCACTGTAGTAACA  850

seq1  TATCTTGAATTCCTCATGTCTGCTAGAGCTCTCTTTCTTATTTCTGCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGAATTCCTCATGTCTGCTAGAGCTCTCTTTCTTATTTCTGCATG  900

seq1  TGAAGCAATTGGTTTTGTAACCCATGACATTGAGTTTCCTTATCTGTAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAATTGGTTTTGTAACCCATGACATTGAGTTTCCTTATCTGTAAT  950

seq1  AGTAGAAAATTTTACTATCATTCTCTAATAGGGATACTGAAGGATGGAGT  1000
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGTAGAAAATTTTACTATCATTCTCT-ATAGGGATACTGAAGGATGGAGT  999

seq1  CGGCCTATCACAGAGGGGAGTACTTAGCAGGGGAAACATTTTCATCTTAG  1050
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGG-CTATCACAGAGGGGAGTACTTAGCAGGGGAAACATTTTCATCTTAG  1048

seq1  CAGTCAAGAAGCAGAGACTGTAGACCATGAGAAGGCAGAAATGAATATAT  1100
      ||||||   ||||||||||   ||||||||||  || |||||||||||||
seq2  CAGTCA--GAGCAGAGACTTGTGACCATGAGA--GC-GAAATGAATATAT  1093

seq1  ATATATATATATATAT  1116
      ||||||||| ||||||
seq2  ATATATATA-ATATAT  1108

seq1: chr8_52557638_52558825
seq2: B6Ng01-087H08.g_67_1239 (reverse)

seq1  GATCCTTCTGAC-TCTCACTAAAAACGATTTTTGAAGACTCACTTTTGCC  49
      |||||||| ||| |||||||  ||||||||||   |||||||| ||||||
seq2  GATCCTTC-GACTTCTCACT--AAACGATTTT--GAGACTCACCTTTGCC  45

seq1  AAATACTGTTTTATCTCTTCCTTCTATATCATGACATTTTTGTACTCTCT  99
      ||||||| ||||||||||    ||||||||||||||||||||||||  ||
seq2  AAATACTTTTTTATCTCT---CTCTATATCATGACATTTTTGTACTTCCT  92

seq1  CCACAAAATATGTATTATTATATCCATCCTGCTTTCAAAGAAGCTAACTT  149
      |||| |||||||||||||||| ||||| ||||||||||||||||| ||||
seq2  CCAC-AAATATGTATTATTATTTCCAT-CTGCTTTCAAAGAAGCT-ACTT  139

seq1  TAGAACAATGAAATTTTATTTGGCACTATTAATTCAAGTAGTCAATGGAT  199
      ||||||||||||||||   ||||||||| |||||||||||||| ||||||
seq2  TAGAACAATGAAATTT--ATTGGCACTA-TAATTCAAGTAGTC-ATGGAT  185

seq1  GAACTCATGAAATTGAAGACTGTTGAACTCTCATTTCTACTCCGATAATG  249
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAACTCATGAAA-TGAAGACTGTTGAACTCTCATTTCTACTCCGATAATG  234

seq1  ATAATGAGGTTATAAATTGGCCTAATGTTGTTTTAGTTGTCCTTACTTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAGGTTATAAATTGGCCTAATGTTGTTTTAGTTGTCCTTACTTTT  284

seq1  TACACCCGTGTTTCTCTGTCTTTCCGAATAACATTTCTGTGTTGTTCTCG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCCGTGTTTCTCTGTCTTTCCGAATAACATTTCTGTGTTGTTCTCG  334

seq1  ATTTCTTGACCAGGACTTCATTTATTTATTTTTACATCCATTCATGTGGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTGACCAGGACTTCATTTATTTATTTTTACATCCATTCATGTGGC  384

seq1  CCATCTTTCCATGACTGGATTTGAGGCCCATTCCACATGGAAATAAATGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTTCCATGACTGGATTTGAGGCCCATTCCACATGGAAATAAATGA  434

seq1  CTGATAAATAAATTACTTGAAAACCTTGCCTTTCTGGTCAGAGGTAGAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAATAAATTACTTGAAAACCTTGCCTTTCTGGTCAGAGGTAGAAC  484

seq1  TAAGCACTTTGGCTAAGCTAAACTGGCAGAAAGCTGACCTCTAAGTAGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACTTTGGCTAAGCTAAACTGGCAGAAAGCTGACCTCTAAGTAGTT  534

seq1  ATGTTTTTACCCCTGGACAAGTGTTAGTTTAATTTTTAGTAAGAGAAACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTTACCCCTGGACAAGTGTTAGTTTAATTTTTAGTAAGAGAAACT  584

seq1  ACACATTGCAAAGAAGCATGATGAATACAGAGACTTATCCTTGTTTGAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTGCAAAGAAGCATGATGAATACAGAGACTTATCCTTGTTTGAGA  634

seq1  TACTTAGAATAAACTGCAGACTAAAACTCTGCCCTAAGCAAAAAGTTGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGAATAAACTGCAGACTAAAACTCTGCCCTAAGCAAAAAGTTGTA  684

seq1  CCTCTCTAAGGTTCAAGAAACATTGGGGAAGAGGAAACAGAAAGATTTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTAAGGTTCAAGAAACATTGGGGAAGAGGAAACAGAAAGATTTTA  734

seq1  AGGGTGAAAACCAAAGGTAATGACTGAAATGTTATATTCAGGGCATTAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAAAACCAAAGGTAATGACTGAAATGTTATATTCAGGGCATTAAC  784

seq1  AATGCCACTGAAAATCTGATCTCCATACTAATATCTGGCCTTCATATGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCACTGAAAATCTGATCTCCATACTAATATCTGGCCTTCATATGAA  834

seq1  TTGGCCTATCAGTATCTAATCATGGGTTGCAGGGCATAAATGGGGTCCTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTATCAGTATCTAATCATGGGTTGCAGGGCATAAATGGGGTCCTA  884

seq1  ACCCTCTCTTAAGAAGAGTTGACAAATGAAAGAGTCTAGCAATCCACAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTCTTAAGAAGAGTTGACAAATGAAAGAGTCTAGCAATCCACAGT  934

seq1  CATTGCCTTTACTTGTTTACTAAATGGAAATTCTATCCATGGATTTACAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCTTTACTTGTTTACTAAATGGAAATTCTATCCATGGATTTACAG  984

seq1  AACTCCTGATTAAATTAGTGCATCACAGAACAAAGTATAAAGGCATGAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTGATTAAATTAGTGCATCACAGAACAAAGTATAAAGGCATGAGT  1034

seq1  GATGGGAAGAGACCCAAGGCAAGAAGGAAGAAGTCACAGGGACATGAATG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGAAGAGACCCAAGGCAAGAAGGAAGAAGTCACAGGGACATGAATG  1084

seq1  TAAACAGAATGGACTATGTTCTGATACAAATTTGTCAAATAATAAATCCA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGAATGGACTATGTTCTGATACAAATTTGTCAAATAATAAATCCA  1134

seq1  TAAAAATCAATGCAATACCGAGAAAAATACCCAGAATTC  1188
      |||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCAATGCAATACCGAGAAAAATACCCAGAATTC  1173