BAC Information

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BAC

Clone NameB6Ng01-087I04
Chromosome16 (Build37)8 (Build37)
Map Location 93,066,620 - 93,066,901114,686,416 - 114,687,347
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6, Runx1, EG666023
Downstream geneLOC100040747, Setd4, LOC670912, Cbr1, EG435489, Cbr3, Dopey2, Morc3, Chaf1b, Cldn14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087I04.bB6Ng01-087I04.g
ACCDH900616DH900617
length181933
definitionDH900616|Mus musculus domesticus DNA, BAC clone: B6Ng01-087I04, 5' end.DH900617|Mus musculus domesticus DNA, BAC clone: B6Ng01-087I04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(93,066,620 - 93,066,901)(114,686,416 - 114,687,347)
sequence
tcagctcctcctgcaccatgcctgcctggatgctgccctgctcctgcctt
gatgataatggactgatcctttgaacctgtaagccagtctcaattaaatg
ttgtccttataagagttgccttggtcatgatatctgttcacagcagtaaa
accctaagaccagaggggtgtgtgtgtgtgt
gaattcacatccttgtgcttgcaaggcaaatattttaccaactgggctat
ctctctagcctctaagtcatttagtttaaaaaaaaaaacaaccaaatttg
gcatttgacttgttgatattaatagcaaaaatatattatagaagaccctg
aggtagcaaaattaagaaattccaggaaaagcatggagaatattgtatcc
tgtgtagctaattgacattcaggtgttaaacctagcatctcaatgatgag
catttgaaatttctgggcacaatttttccctcatgagctctctgtgaaaa
atctcttggagcatttgctttagggcgtggctccctcacatacagccaga
tgcatatatattaggatggctttaccaaggcaaggctggtagactccatc
aggttgaaactcttcaagacatatgacctggtacagtcaacaaataggta
gccatctaagatgacagaaagagaagaaacacagtttataagagacctta
ttcatacctgtgactttgttttgtgacactgtttctgggggagatgttaa
gtgtctactcacaccaggtctggaattaacattatacctaagtaaggata
ctaccaaaacctagcttggtgaaccaatgagtcttattggggttatttat
agaaacatggatgaaggattacttataagatcagagatgactcaaaaggc
atctttatcaacaaatgcccattctagcagggatgacagaacttggagca
cactgcacaatctccagatagcttagtggattggaaagggccctttttag
gtagcctagttagtctgtgtctcttccagcagcttagctggtctctgctt
attgtggactgctgtacttgtctgagactcaacagttcctatggcttata
tatgcttggagagaggttgcgggggggtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_93066620_93066901
seq2: B6Ng01-087I04.b_55_235

seq1  TCAGCTACTCCTGCACCAAGCCTGCCTGGATGCTGCCATGTTCCCGCCTT  50
      |||||| ||||||||||| |||||||||||||||||| || ||| |||||
seq2  TCAGCTCCTCCTGCACCATGCCTGCCTGGATGCTGCCCTGCTCCTGCCTT  50

seq1  GATGATAATGGTCTGACCCTCTGAACCTGTAAGCCAGCCCCAATTAGATG  100
      ||||||||||| |||| ||| |||||||||||||||| | |||||| |||
seq2  GATGATAATGGACTGATCCTTTGAACCTGTAAGCCAGTCTCAATTAAATG  100

seq1  TTGTCCTTAGAAGAGTTGCCTTGGTCATGGTGTCTGTTCACAGAACAGTA  150
      ||||||||| ||||||||||||||||||| | |||||||||||  |||||
seq2  TTGTCCTTATAAGAGTTGCCTTGGTCATGATATCTGTTCACAG--CAGTA  148

seq1  AAACCCTACCTAAGA-CAGTGACATTAGAACTGACCTGAGCTTCCCCAAG  199
      ||||    ||||||| ||| |   |  |   ||   || |  |       
seq2  AAAC----CCTAAGACCAGAGGGGTGTG---TG---TGTGTGT-------  181

seq1  GCTGTCAAGCTTTCCTACATTATGACTATGTCCTCCAAACAGATACACTT  249
                                                        
seq2  --------------------------------------------------  181

seq1  GCTCCTGGAGAGGACAAAGGTGTGTGTGTGTGT  282
                                       
seq2  ---------------------------------  181

seq1: chr8_114686416_114687347
seq2: B6Ng01-087I04.g_69_1001

seq1  GAATTCACATCCTTGTGCTTGCAAGGCAAATATTTTACCAACTGGGCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATCCTTGTGCTTGCAAGGCAAATATTTTACCAACTGGGCTAT  50

seq1  CTCTCTAGCCTCTAAGTCATTTAGTTTAAAAAAAAAAACAACCAAATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAGCCTCTAAGTCATTTAGTTTAAAAAAAAAAACAACCAAATTTG  100

seq1  GCATTTGACTTGTTGATATTAATAGCAAAAATATATTATAGAAGACCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGACTTGTTGATATTAATAGCAAAAATATATTATAGAAGACCCTG  150

seq1  AGGTAGCAAAATTAAGAAATTCCAGGAAAAGCATGGAGAATATTGTATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCAAAATTAAGAAATTCCAGGAAAAGCATGGAGAATATTGTATCC  200

seq1  TGTGTAGCTAATTGACATTCAGGTGTTAAACCTAGCATCTCAATGATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGCTAATTGACATTCAGGTGTTAAACCTAGCATCTCAATGATGAG  250

seq1  CATTTGAAATTTCTGGGCACAATTTTTCCCTCATGAGCTCTCTGTGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAAATTTCTGGGCACAATTTTTCCCTCATGAGCTCTCTGTGAAAA  300

seq1  ATCTCTTGGAGCATTTGCTTTAGGGCGTGGCTCCCTCACATACAGCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTGGAGCATTTGCTTTAGGGCGTGGCTCCCTCACATACAGCCAGA  350

seq1  TGCATATATATTAGGATGGCTTTACCAAGGCAAGGCTGGTAGACTCCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATATATTAGGATGGCTTTACCAAGGCAAGGCTGGTAGACTCCATC  400

seq1  AGGTTGAAACTCTTCAAGACATATGACCTGGTACAGTCAACAAATAGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGAAACTCTTCAAGACATATGACCTGGTACAGTCAACAAATAGGTA  450

seq1  GCCATCTAAGATGACAGAAAGAGAAGAAACACAGTTTATAAGAGACCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTAAGATGACAGAAAGAGAAGAAACACAGTTTATAAGAGACCTTA  500

seq1  TTCATACCTGTGACTTTGTTTTGTGACACTGTTTCTGGGGGAGATGTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACCTGTGACTTTGTTTTGTGACACTGTTTCTGGGGGAGATGTTAA  550

seq1  GTGTCTACTCACACCAGGTCTGGAATTAACATTATACCTAAGTAAGGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTACTCACACCAGGTCTGGAATTAACATTATACCTAAGTAAGGATA  600

seq1  CTACCAAAACCTAGCTTGGTGAACCAATGAGTCTTATTGGGGTTATTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAAAACCTAGCTTGGTGAACCAATGAGTCTTATTGGGGTTATTTAT  650

seq1  AGAAACATGGATGAAGGATTACTTATAAGATCAGAGATGACTCAAAAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATGGATGAAGGATTACTTATAAGATCAGAGATGACTCAAAAGGC  700

seq1  ATCTTTATCAACAAATGCCCATTCTAGCAGGGATGACAGAACTTGGAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATCAACAAATGCCCATTCTAGCAGGGATGACAGAACTTGGAGCA  750

seq1  CACTGCACAATCTCCAGATAGCTTAGTGGATTGGAAAGGGCCCTTTTTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCACAATCTCCAGATAGCTTAGTGGATTGGAAAGGGCCCTTTTTAG  800

seq1  GTAGCCTAGTTAGTCTGTGTCTCTTCCAGCAGCTTAGCTGGTCTCTGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTAGTTAGTCTGTGTCTCTTCCAGCAGCTTAGCTGGTCTCTGCTT  850

seq1  ATTGTGGACTGCTGTACTTGTCTGAGACTCAGCAGTTCCTATGGCTTATA  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATTGTGGACTGCTGTACTTGTCTGAGACTCAACAGTTCCTATGGCTTATA  900

seq1  TATGCTTGGAGAGAGGTTGC-GGGGGGTGGGGG  932
      |||||||||||||||||||| ||||||||||||
seq2  TATGCTTGGAGAGAGGTTGCGGGGGGGTGGGGG  933