BAC Information

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BAC

Clone NameB6Ng01-087K11
Chromosome8 (Build37)12 (Build37)
Map Location 70,250,321 - 70,250,64453,342,201 - 53,343,181
singlet/doubletsingletsinglet
Overlap genePsd3
Upstream geneBC053440, LOC665453, Nat1, Nat2, LOC100041265, Nat3
Downstream geneSh2d4a, LOC665510, 4732435N03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087K11.bB6Ng01-087K11.g
ACCDH900720DH900721
length983981
definitionDH900720|Mus musculus domesticus DNA, BAC clone: B6Ng01-087K11, 5' end.DH900721|Mus musculus domesticus DNA, BAC clone: B6Ng01-087K11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(70,250,321 - 70,250,644)(53,342,201 - 53,343,181)
sequence
gaattcaagaactcgccattcacttaaggcaggagaggagccctgcagtg
aaacaaagatgaggtgagtagatcacccagatggatgattgacgtcatgc
tcgtgggtcccttagatgtgggcgtggctatgctggttaaaggggaggtg
ttaaaaagtgagacccaaatactgcttagacgaggtcagctggcctatga
gggcagagatacatagaaagtgacaggaaaagaagtggggagaggggatg
gatccaccgtagcatagcaatatcagataaggtaaggagatttaaaagga
ctttttttttttattagatattttctttatttgcatttcaaatgttatcc
cttcctggtttcccctctgaaaacccccctatcccaacccccaccccctg
ctcaccaacctacccactcctgcttccctgtcctagcattcccctatact
ggggcatataaccttcacaggactaagggcccctcctcccattgatgact
gactaggccatcctctgctacaaatggagctagagccacgagtccctcca
tgtgttttcttgggttggtggtttagtcccagggagttctgggggtactg
gttggttcatattgttgtacctcctaagggtctacaaaccccttcaggac
cttgggtaatttctctagctccttcataggggaccctgttcacagtccaa
ttgatggctgtgagcatccacctctgtctttgtcaggcactgtcagagca
tctcaggagacagctatatcaggctcctggtagcaagcacttattggcaa
acacaaaaagggtctgggattgggtgattgtatatgaatgagatggatcc
ccaggtggggcagtctttggatggcctttccttcagtctctgctccacac
tttgtctctgtatctcctcccatgggtatttagttccccttctaagaagg
accgaagtatccacactttggtcttcttcttct
gaattcctccctgatccctcctgctgacttgtacagaggctgaggcctgg
ctgtctctgctaggtcttgtcactgctgttgctaacccaactctgccaaa
ctggactgctggtgcattcgtgaagtgtttgtgagtggatggagctgcag
ttgctgacctgtgaactggactgcggatttccagacaacaaagacgggag
ttgctccaaagaacctttctaaacaggtccacttctcctataatcctttc
ttttccactacctctggtgggtggtgtgttatcaggaaggttgaagtgtt
taagaaccatcattaaaactaggatttaaaaaagttaaagttacagtcct
actttctagaaactacattgtggtgattcttttattttattttttagtat
atatatatatattttattagatattttctttataaacatttcaaatgcta
tcccaaaagttccctatatcctccccccaccctgctcccctacccaccca
ctcccacttcttggccctggtgttcccctgtacttaggcatataaagttt
gtaagaccaaggggcctctcttcccaatgatggccgactaggtcatcttc
tgctacatgtgcagctagagtcaagagctccggggtactgggtagttcat
attgttccacctatagagttgcagaccccttcagctccttgggtactttc
tctagctcctccactgggtgattcttataatacagagggagctttagtgg
aacctttttaaggggagataaaagaaactgattggaaagattaaaaggtg
tctaaatcataactttggctcttaacccaggttaaggcagtgaagactag
atggacagtaaggattttgttgactgtttattttctggcaagggtagggt
tatctattagctagagagatagtgagaaaggatgtagtgaggagagacag
agagtgagaggatgagagggaaggatggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_70250321_70250644
seq2: B6Ng01-087K11.b_65_570

seq1  CATTCACTTAAGGCAG-----------------GAAATACAGA-------  26
      ||||||||||||||||                 |||| | |||       
seq2  CATTCACTTAAGGCAGGAGAGGAGCCCTGCAGTGAAACAAAGATGAGGTG  50

seq1  --------------------------------GTTCTT---TCTCTTATA  41
                                      | || |   || |||| |
seq2  AGTAGATCACCCAGATGGATGATTGACGTCATGCTCGTGGGTCCCTTAGA  100

seq1  -------------ATGTTTGTTAA----------TTAAA-----------  57
                   ||| | |||||          |||||           
seq2  TGTGGGCGTGGCTATGCTGGTTAAAGGGGAGGTGTTAAAAAGTGAGACCC  150

seq1  -------GCTTTTATGAATTC-----------------------ACATCG  77
             ||||  | ||  ||                       |||| |
seq2  AAATACTGCTTAGACGAGGTCAGCTGGCCTATGAGGGCAGAGATACATAG  200

seq1  TAA--TAC---------------------GCATAGATC------TGCA--  96
       ||   ||                     | || ||||       |||  
seq2  AAAGTGACAGGAAAAGAAGTGGGGAGAGGGGATGGATCCACCGTAGCATA  250

seq1  -AATTATTGCATCAGGTTTGAAGAT--------AC------TTTTTATTA  131
        | |||   || ||||  | ||||        ||      |||||||||
seq2  GCAATATCAGATAAGGTAAGGAGATTTAAAAGGACTTTTTTTTTTTATTA  300

seq1  GATATTTTCTTTATTTACATTTCAAATGTTATCCCCTTTCCTAGTTTCCC  181
      |||||||||||||||| ||||||||||||||||||  ||||| |||||||
seq2  GATATTTTCTTTATTTGCATTTCAAATGTTATCCC--TTCCTGGTTTCCC  348

seq1  CTCTGAAAA-TCCCCTATCCCCTTCACCATCCCACCTACTCCCCAACCCA  230
      |||||||||  ||||||||||   | |||  || ||| ||| |||||| |
seq2  CTCTGAAAACCCCCCTATCCCAACCCCCA--CCCCCTGCTCACCAACCTA  396

seq1  CCCA----------------CTGGCATTCCCATATACTGGGGCATAGAAC  264
      ||||                || |||||||| |||||||||||||| |||
seq2  CCCACTCCTGCTTCCCTGTCCTAGCATTCCCCTATACTGGGGCATATAAC  446

seq1  CTTCACAGGACCAAGGGCCTCTCCTCCCATTGATGACGAACTAGGCCTTC  314
      ||||||||||| ||||||| |||||||||||||||||  |||||||| ||
seq2  CTTCACAGGACTAAGGGCCCCTCCTCCCATTGATGACTGACTAGGCCATC  496

seq1  CTCTGCTACA  324
      ||||||||||
seq2  CTCTGCTACA  506

seq1: chr12_53342201_53343181
seq2: B6Ng01-087K11.g_69_1049

seq1  GAATTCCTCCCTGATCCCTCCTGCTGACTTGTACAGAGGCTGAGGCCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCCTGATCCCTCCTGCTGACTTGTACAGAGGCTGAGGCCTGG  50

seq1  CTGTCTCTGCTAGGTCTTGTCACTGCTGTTGCTAACCCAACTCTGCCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTGCTAGGTCTTGTCACTGCTGTTGCTAACCCAACTCTGCCAAA  100

seq1  CTGGACTGCTGGTGCATTCGTGAAGTGTTTGTGAGTGGATGGAGCTGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTGCTGGTGCATTCGTGAAGTGTTTGTGAGTGGATGGAGCTGCAG  150

seq1  TTGCTGACCTGTGAACTGGACTGCGGATTTCCAGACAACAAAGACGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGACCTGTGAACTGGACTGCGGATTTCCAGACAACAAAGACGGGAG  200

seq1  TTGCTCCAAAGAACCTTTCTAAACAGGTCCACTTCTCCTATAATCCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCAAAGAACCTTTCTAAACAGGTCCACTTCTCCTATAATCCTTTC  250

seq1  TTTTCCACTACCTCTGGTGGGTGGTGTGTTATCAGGAAGGTTGAAGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCACTACCTCTGGTGGGTGGTGTGTTATCAGGAAGGTTGAAGTGTT  300

seq1  TAAGAACCATCATTAAAACTAGGATTTAAAAAAGTTAAAGTTACAGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACCATCATTAAAACTAGGATTTAAAAAAGTTAAAGTTACAGTCCT  350

seq1  ACTTTCTAGAAACTACATTGTGGTGATTCTTTTATTTTATTTTTTAGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTAGAAACTACATTGTGGTGATTCTTTTATTTTATTTTTTAGTAT  400

seq1  ATATATATATATTTTATTAGATATTTTCTTTATAAACATTTCAAATGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATTTTATTAGATATTTTCTTTATAAACATTTCAAATGCTA  450

seq1  TCCCAAAAGTTCCCTATATCCTCCCCCCACCCTGCTCCCCTACCCACCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAAGTTCCCTATATCCTCCCCCCACCCTGCTCCCCTACCCACCCA  500

seq1  CTCCCACTTCTTGGCCCTGGTGTTCCCCTGTACTTAGGCATATAAAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACTTCTTGGCCCTGGTGTTCCCCTGTACTTAGGCATATAAAGTTT  550

seq1  GTAAGACCAAGGGGCCTCTCTTCCCAATGATGGCCGACTAGGTCATCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGACCAAGGGGCCTCTCTTCCCAATGATGGCCGACTAGGTCATCTTC  600

seq1  TGCTACATGTGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGGTAGTTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACATGTGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGGTAGTTCAT  650

seq1  ATTGTTCCACCTATAGAGTTGCAGACCCCTTCAGCTCCTTGGGTACTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCCACCTATAGAGTTGCAGACCCCTTCAGCTCCTTGGGTACTTTC  700

seq1  TCTAGCTCCTCCACTGGGTGATTCTTATAATACAGAGGGAGCTTTAGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTCCTCCACTGGGTGATTCTTATAATACAGAGGGAGCTTTAGTGG  750

seq1  AACCTTTTTAAGGGGAGATAAAAGAAACTGATTGGAAAGATTAAAAGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTTTAAGGGGAGATAAAAGAAACTGATTGGAAAGATTAAAAGGTG  800

seq1  TCTAAATCATAACTTTGGCTCTTAACCCAGGTTAAGGCAGTGAAGACTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATCATAACTTTGGCTCTTAACCCAGGTTAAGGCAGTGAAGACTAG  850

seq1  ATGGACAGTAAGGATTTTGTTGACTGTTTA-TTTCTGGCAAGGGTAGGGT  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATGGACAGTAAGGATTTTGTTGACTGTTTATTTTCTGGCAAGGGTAGGGT  900

seq1  TATCTATTAGCTAGAGAGATAGTGAGAAAAGGATGTAGTGAGGAGAGACA  949
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TATCTATTAGCTAGAGAGATAGTGAG-AAAGGATGTAGTGAGGAGAGACA  949

seq1  GAGAGGGAGAGGATGAGAGGGAAGGATGGAAG  981
      ||||| ||||||||||||||||||||||||||
seq2  GAGAGTGAGAGGATGAGAGGGAAGGATGGAAG  981