BAC Information

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BAC

Clone NameB6Ng01-087L04
Chromosome8 (Build37)
Map Location 99,220,601 - 99,359,468
singlet/doubletdoublet
Overlap genenone
Upstream geneNdrg4, Setd6, Cnot1, LOC100041953, LOC100041088, BC031853, LOC100041972, Got2, LOC667445
Downstream geneLOC333331, LOC546090, LOC636859
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087L04.bB6Ng01-087L04.g
ACCDH900750DH900751
length1,1661,095
definitionDH900750|Mus musculus domesticus DNA, BAC clone: B6Ng01-087L04, 5' end.DH900751|Mus musculus domesticus DNA, BAC clone: B6Ng01-087L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,358,287 - 99,359,468)(99,220,601 - 99,221,704)
sequence
gaattcactgtaaagtttgttcttagaaaagcacagcaggctttaaaatt
cccactcattgtgtatgtgtgtttccaaagatgacacatatgcccaatat
aaatagacgaggatggaaaagtttgcttttaagtagtcatttgagacttg
gaagatcattccccatagcgtgatttcttagcaggaaagctaagtttatt
caacccacagtacgccaaaacactagattatatctgaagaaataaaaaat
aaaataaaataatgactggtgctttccaacaactgttctcacctcagtat
gaagctaatccataacgtgacactcatcacctggaataagttttgcttat
ttggacttttgctgaataaaacaatacagtgtgataccttgttctatgtc
gggtttcctggtcttaacaccacttttgaaatcgcctcgtgaagctaagt
taaaaccacaatgattctaagtgcaaaatgtaattgaatggacttcatta
gctcatgaaatgtcatcctttgaacagttctacatatattttaatcatgc
tcacctcgtttaccctctcttacccctttcacgccccctggactccatct
tcttctcctaagtccctcttttcctttcaagtttttatttatcacaatcc
actgagtttaattagggctgcttcaatgagcatggttgtggagctaccta
ctggagcatggacagctaaacactgactggctataacactgaagattgtc
tcctttttcccacagtacatttaaactaagagtagataaaaatgggagaa
atgagaactttgcctccaaaggcagttctctaatacctttccctagagag
gccagtgttgctgagtttttgattacctatggagacaaatttgagacaca
gatgagcttccagatgtactattttcctcccacagaaatatatatgttgt
tggttgaaaagaagtgtttggccctttcaaataaataacataactagtca
actatcctactgcattattcacccattactaaagagtgtctaatgatttg
gaggtattatcccttcatttggtcacaattatagtcgtatatagaatata
agaacttattgattcctctatttacattatgattgtttgtcttccaggtg
agtcgtgcactgtgtg
gaattcagctaattgacctcaaacaacgtgactgacaaaattactcaacc
cagacgtgtataaatttctgacttacagaatcatgaaatgtagtaaaata
tctgttgtacatttagaagacctaacataattactacattgtggagtttt
ctgagaattaagataataaatgtaagaccattctataaattccacttagg
gatttaataagagaaagatggctctgaatctggaagtccctatatcttat
actaatcctaaaacaactttatagtattctgattgcaataatttgttcta
gagactctgatagaaaaacaaaactcaaaacaacaaaatttaggaaatct
tgggaaacgaagcacagaagctggcagctgactctatgcttgaaagctct
gaggtggtgacttctgctgcagtccctgaaagaagacatgccttgttatt
catctgcccagcacctcctatgtcttgattgtcccccagtgtgaggcagg
tggcatctattcccatgtactggagtggctgctccccaaaaacagctcaa
gacaaggttcttgtcctggagaatcaaatctctgtcttctatagttttag
cgatatctcatgagacttgtgattgatcccaggcttagtttacttgagag
aattacgagtctccatgctctcttaacacatccaaaagtgctggcatgtc
tgaaaatccccaaagcttggagaaattgtgtggagtgctgatacccctgc
caccttctgacatccaaaatgatttacttttaaaggtgtcattgtgtgaa
gtcatcgatttaactgtccactgcaaagggactttgcagttggagcattt
ttatttaaaaagaagtgactttctccatagataagctaggaaaccgttta
cactttaaaacctgagttactgaatgatttctgagcacgttagtcttcta
ttacttagaaagtttaaaagatggggagggacaaaagtattgtatacatt
tacattttaaattgtgtaatcatgtattatctgaaactatgccatgctgt
aaaatttaagataaagtgtctgtaatgcatacaaatgtcatttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_99358287_99359468
seq2: B6Ng01-087L04.b_48_1213 (reverse)

seq1  CACACAGGTGCACGGACCTACCT-GCAGACAAAACAATCATACATGTAAA  49
      |||||| |||||| |||  |||| | |||| ||||||||||| |||| ||
seq2  CACACA-GTGCAC-GACTCACCTGGAAGAC-AAACAATCATA-ATGT-AA  45

seq1  ATAGAGAAATCAATAAGTCTTAATATTCTAATATACGACTAATTTAATTG  99
      |||||| |||||||||||  | ||||||| |||||||||||   ||||||
seq2  ATAGAGGAATCAATAAGTTCTTATATTCT-ATATACGACTA---TAATTG  91

seq1  TGACCCAAATGAAGGGATAATACCTCCAAAATCATTAGACACTCTTTAGT  149
      ||| ||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGA-CCAAATGAAGGGATAATACCTCC-AAATCATTAGACACTCTTTAGT  139

seq1  AATGGGTTGAATAATGGCAGTTAGGATAGTTGACTAGTTATGTTATTTAT  199
      |||||| |||||||| |||| |||||||||||||||||||||||||||| 
seq2  AATGGG-TGAATAAT-GCAG-TAGGATAGTTGACTAGTTATGTTATTTA-  185

seq1  TTTGAAAGGGCCAAACACTTCTTTTCAACCAACAACATATTATTATTTCT  249
      ||||||||||||||||||||||||||||||||||||||||   |||||||
seq2  TTTGAAAGGGCCAAACACTTCTTTTCAACCAACAACATAT--ATATTTCT  233

seq1  GTGGGAGGAAAATAGTACATCTGGAAGCTCATCTGTGTCTCAAATTTGTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGGAAAATAGTACATCTGGAAGCTCATCTGTGTCTCAAATTTGTC  283

seq1  TCCATAGGTAATCAAAAACTCAGCAACACTGGCCTCTCTAGGGAAAGGTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGGTAATCAAAAACTCAGCAACACTGGCCTCTCTAGGGAAAGGTA  333

seq1  TTAGAGAACTGCCTTTGGAGGCAAAGTTCTCATTTCTCCCATTTTTATCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAACTGCCTTTGGAGGCAAAGTTCTCATTTCTCCCATTTTTATCT  383

seq1  ACTCTTAGTTTAAATGTACTGTGGGAAAAAGGAGACAATCTTCAGTGTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAGTTTAAATGTACTGTGGGAAAAAGGAGACAATCTTCAGTGTTA  433

seq1  TAGCCAGTCAGTGTTTAGCTGTCCATGCTCCAGTAGGTAGCTCCACAACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGTCAGTGTTTAGCTGTCCATGCTCCAGTAGGTAGCTCCACAACC  483

seq1  ATGCTCATTGAAGCAGCCCTAATTAAACTCAGTGGATTGTGATAAATAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCATTGAAGCAGCCCTAATTAAACTCAGTGGATTGTGATAAATAAA  533

seq1  AACTTGAAAGGAAAAGAGGGACTTAGGAGAAGAAGATGGAGTCCAGGGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAAAGGAAAAGAGGGACTTAGGAGAAGAAGATGGAGTCCAGGGGG  583

seq1  CGTGAAAGGGGTAAGAGAGGGTAAACGAGGTGAGCATGATTAAAATATAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAAAGGGGTAAGAGAGGGTAAACGAGGTGAGCATGATTAAAATATAT  633

seq1  GTAGAACTGTTCAAAGGATGACATTTCATGAGCTAATGAAGTCCATTCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACTGTTCAAAGGATGACATTTCATGAGCTAATGAAGTCCATTCAA  683

seq1  TTACATTTTGCACTTAGAATCATTGTGGTTTTAACTTAGCTTCACGAGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTTGCACTTAGAATCATTGTGGTTTTAACTTAGCTTCACGAGGC  733

seq1  GATTTCAAAAGTGGTGTTAAGACCAGGAAACCCGACATAGAACAAGGTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAAAAGTGGTGTTAAGACCAGGAAACCCGACATAGAACAAGGTAT  783

seq1  CACACTGTATTGTTTTATTCAGCAAAAGTCCAAATAAGCAAAACTTATTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGTATTGTTTTATTCAGCAAAAGTCCAAATAAGCAAAACTTATTC  833

seq1  CAGGTGATGAGTGTCACGTTATGGATTAGCTTCATACTGAGGTGAGAACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGATGAGTGTCACGTTATGGATTAGCTTCATACTGAGGTGAGAACA  883

seq1  GTTGTTGGAAAGCACCAGTCATTATTTTATTTTATTTTTTATTTCTTCAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGGAAAGCACCAGTCATTATTTTATTTTATTTTTTATTTCTTCAG  933

seq1  ATATAATCTAGTGTTTTGGCGTACTGTGGGTTGAATAAACTTAGCTTTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATCTAGTGTTTTGGCGTACTGTGGGTTGAATAAACTTAGCTTTCC  983

seq1  TGCTAAGAAATCACGCTATGGGGAATGATCTTCCAAGTCTCAAATGACTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGAAATCACGCTATGGGGAATGATCTTCCAAGTCTCAAATGACTA  1033

seq1  CTTAAAAGCAAACTTTTCCATCCTCGTCTATTTATATTGGGCATATGTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAGCAAACTTTTCCATCCTCGTCTATTTATATTGGGCATATGTGT  1083

seq1  CATCTTTGGAAACACACATACACAATGAGTGGGAATTTTAAAGCCTGCTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTGGAAACACACATACACAATGAGTGGGAATTTTAAAGCCTGCTG  1133

seq1  TGCTTTTCTAAGAACAAACTTTACAGTGAATTC  1182
      |||||||||||||||||||||||||||||||||
seq2  TGCTTTTCTAAGAACAAACTTTACAGTGAATTC  1166

seq1: chr8_99220601_99221704
seq2: B6Ng01-087L04.g_69_1163

seq1  GAATTCAGCTAATTGACCTCAAACAACGTGACTGACAAAATTACTCAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTAATTGACCTCAAACAACGTGACTGACAAAATTACTCAACC  50

seq1  CAGACGTGTATAAATTTCTGACTTACAGAATCATGAAATGTAGTAAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACGTGTATAAATTTCTGACTTACAGAATCATGAAATGTAGTAAAATA  100

seq1  TCTGTTGTACATTTAGAAGACCTAACATAATTACTACATTGTGGAGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGTACATTTAGAAGACCTAACATAATTACTACATTGTGGAGTTTT  150

seq1  CTGAGAATTAAGATAATAAATGTAAGACCATTCTATAAATTCCACTTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATTAAGATAATAAATGTAAGACCATTCTATAAATTCCACTTAGG  200

seq1  GATTTAATAAGAGAAAGATGGCTCTGAATCTGGAAGTCCCTATATCTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAATAAGAGAAAGATGGCTCTGAATCTGGAAGTCCCTATATCTTAT  250

seq1  ACTAATCCTAAAACAACTTTATAGTATTCTGATTGCAATAATTTGTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATCCTAAAACAACTTTATAGTATTCTGATTGCAATAATTTGTTCTA  300

seq1  GAGACTCTGATAGAAAAACAAAACTCAAAACAACAAAATTTAGGAAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCTGATAGAAAAACAAAACTCAAAACAACAAAATTTAGGAAATCT  350

seq1  TGGGAAACGAAGCACAGAAGCTGGCAGCTGACTCTATGCTTGAAAGCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAACGAAGCACAGAAGCTGGCAGCTGACTCTATGCTTGAAAGCTCT  400

seq1  GAGGTGGTGACTTCTGCTGCAGTCCCTGAAAGAAGACATGCCTTGTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGTGACTTCTGCTGCAGTCCCTGAAAGAAGACATGCCTTGTTATT  450

seq1  CATCTGCCCAGCACCTCCTATGTCTTGATTGTCCCCCAGTGTGAGGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCCCAGCACCTCCTATGTCTTGATTGTCCCCCAGTGTGAGGCAGG  500

seq1  TGGCATCTATTCCCATGTACTGGAGTGGCTGCTCCCCAAAAACAGCTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCTATTCCCATGTACTGGAGTGGCTGCTCCCCAAAAACAGCTCAA  550

seq1  GACAAGGTTCTTGTCCTGGAGAATCAAATCTCTGTCTTCTATAGTTTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGTTCTTGTCCTGGAGAATCAAATCTCTGTCTTCTATAGTTTTAG  600

seq1  CGATATCTCATGAGACTTGTGATTGATCCCAGGCTTAGTTTACTTGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATATCTCATGAGACTTGTGATTGATCCCAGGCTTAGTTTACTTGAGAG  650

seq1  AATTACGAGTCTCCATGCTCTCTTAACACATCCAAAAGTGCTGGCATGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACGAGTCTCCATGCTCTCTTAACACATCCAAAAGTGCTGGCATGTC  700

seq1  TGAAAATCCCCAAAGCTTGGAGAAATTGTGTGGAGTGCTGATACCCCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATCCCCAAAGCTTGGAGAAATTGTGTGGAGTGCTGATACCCCTGC  750

seq1  CACCTTCTGACATCCAAAATGATTTACTTTTAAAGGTGTCATTGTGTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCTGACATCCAAAATGATTTACTTTTAAAGGTGTCATTGTGTGAA  800

seq1  GTCATCGATTTAACTGTCCACTGCAAAGGGACTTTGCAGTTGGAGCATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCGATTTAACTGTCCACTGCAAAGGGACTTTGCAGTTGGAGCATTT  850

seq1  TTATTTAAAAAGAAGTGACTTTCTCCATAGATAAGCTAGGAAACCGTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAAAAAGAAGTGACTTTCTCCATAGATAAGCTAGGAAACCGTTTA  900

seq1  CACTTTAAAACCTGAGTTACTGAATGATTTCTGAGCCACGTTAGTCTTCT  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CACTTTAAAACCTGAGTTACTGAATGATTTCTGAG-CACGTTAGTCTTCT  949

seq1  ATTACTTAAGAAAAGTTTAAAAAGATGGGGAGGGACAAAAGTATTGTATA  1000
      ||||||||   ||||||| |||||||||||||||||||||||||||||||
seq2  ATTACTTA--GAAAGTTT-AAAAGATGGGGAGGGACAAAAGTATTGTATA  996

seq1  CATTTACATTTTAAATTGTGTAATCATGTTATTATCTGAAACTAATGCCA  1050
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  CATTTACATTTTAAATTGTGTAATCATG-TATTATCTGAAACT-ATGCCA  1044

seq1  TGCTGTTAAAATTTAGATAAAGTGTCCTGTAATGCATACAAAATGTTCAT  1100
      |||||| ||| || ||||||||||| ||||||||||||| ||||| ||||
seq2  TGCTGTAAAATTTAAGATAAAGTGT-CTGTAATGCATAC-AAATG-TCAT  1091

seq1  TTGT  1104
      ||||
seq2  TTGT  1095