BAC Information

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BAC

Clone NameB6Ng01-088H21
Chromosome8 (Build37)
Map Location 79,846,528 - 79,847,532
singlet/doubletsinglet
Overlap geneArhgap10
Upstream geneLOC666226, LOC100039211, LOC384847, Nr3c2
Downstream geneLOC100039235, AI931714, Tmem34, Ednra, EG622803, Ttc29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088H21.bB6Ng01-088H21.g
ACCDH901328DH901329
length1,0141,219
definitionDH901328|Mus musculus domesticus DNA, BAC clone: B6Ng01-088H21, 5' end.DH901329|Mus musculus domesticus DNA, BAC clone: B6Ng01-088H21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcatattggttccctgaactgtagagtgagggctattatggttg
gaaaggccaaatggaagcctttagagttgcctctgccaaagaaaatagtg
aatcaaaaacagtatcgtattcctggaggcattgcagaaattactgccac
tatcaaggacttgaaagatgcaggggtggtggttcccaccacatctccgt
ttaactctcctatctggccagtgcaggtggggcagagattacaggaactg
aaaaagcaatccagcaggtctccacagccatcctcaggccctaatctact
acctcatgggttggggatgggcctgcattaagctccagggagcaaagagg
aagacacgtgccagccaaatctgaggagaaggaaacctcccgactggttc
gttcagaagctgcaagctttgctccccaagcatttcacaaggaagagcgg
ctagtgtcccaaaatgacacttaactcatgagcgagaaaatgtggaactg
tcaccaagctacctgatctggcaagcaactcttctcgtggccttgcaatc
ccacaaaggtgacaggactctttcttcagcatatgggataacggttcctc
acccactcctctcgcctggtctcaagctaccagtgtgtgcgtgcctcagg
ggtagctctacctcctcccaatttcacacactgaactccaggccaatcat
cctcatttccctccttcccactcattttgtacatctgccatagacacaga
aagaggtttctgacccaaagcccaagggctaaacctttccagaagtttta
tcaactcccgtgggcacctacaggaatttaatctttcttttcgtacacct
gtttataacaaatatgtaaatcaagaaaatctatcaggtaccatccagca
cggcttgagtggattctagaaaaagaaccagaatatttcacccaccagtg
aaatacacaggctgaggatgccacagaagaggatcattgaagggagaaat
gtctgtcttctacc
gaattcccgggtaggtgacctctaggttaatctatctgttaattccatct
ctgcctctacagacattccattactggggtgttggggctggacacttgct
ggggaggtctggagactgttgctgaggaagtagctgaggaagtctgcaaa
ctgcagctgacccactgtccttgcctcgggccaggttctgaggcctggat
ttgcctggaattgcccagttcttggagacagagatttaggcctagtctcc
ttaactgcctacctgaagcctgtcatggaatcagcccagcctctcagtgg
tgacacccagccataacattattttcattactatataactgtaattttgc
tactcttatgaatcataatgtaaatatttgatatgcaggatgtctgatac
gcaacccctgtaaaagggtcatgtaaagtaaaagattattaagttctgta
tatattaatgctggaaattaatatgacagcaattattccttaactagctt
ttccccaaataacacagagaccttttaatatttcaaagccttaggctcag
ctgggcagattctcaacttactcatctcagttatcccaacacctagcctc
atgcagcctcgtcatgagcaataccttccaggcccatagtcacgtccatc
tcctctcatgtctcctggcaaaaagctttcctcctccaccttcccagggt
tcttttctccctcccaggaagtcccaccttccacttcctgcccaactaat
tggccatcagattttttattaaagccaattaagaaatgccttaggtaggt
gaagaaaggacagagacacaatttcacaccgccctgtgtactccaacagg
gttctaccccaatggggtcggatccacaagctgagaactgctgctctcca
tagagcactatcacagaccgaagtaatgattccactcagtccagcttgcc
cagccagtgagtttagaggcatagtggccccacagcagctgcatcgctgt
cagtgcagatgtacaacagcttcccataaccaccacagtgagagcacact
gtccatccatgtatcctgcgtgagggttgtgccttctctagatcatgtgg
tcctggaccagataacctgcaggaggaggggtttcaggtcatgaggactg
gacaggtaatcagaggtcttagttcctttctctgtgactatctctcaccg
tgaaggggaaacttcgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_79846528_79847532
seq2: B6Ng01-088H21.b_45_1058

seq1  GAATTCTCATATTGGTTCCCTGAACTGTAGAGTGAGGGCTATTATGGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATATTGGTTCCCTGAACTGTAGAGTGAGGGCTATTATGGTTG  50

seq1  GAAAGGCCAAATGGAAGCCTTTAGAGTTGCCTCTGCCAAAGAAAATAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCCAAATGGAAGCCTTTAGAGTTGCCTCTGCCAAAGAAAATAGTG  100

seq1  AATCAAAAACAGTATCGTATTCCTGGAGGCATTGCAGAAATTACTGCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAAACAGTATCGTATTCCTGGAGGCATTGCAGAAATTACTGCCAC  150

seq1  TATCAAGGACTTGAAAGATGCAGGGGTGGTGGTTCCCACCACATCTCCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGGACTTGAAAGATGCAGGGGTGGTGGTTCCCACCACATCTCCGT  200

seq1  TTAACTCTCCTATCTGGCCAGTGCAGGTGGGGCAGAGATTACAGGAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCTCCTATCTGGCCAGTGCAGGTGGGGCAGAGATTACAGGAACTG  250

seq1  AAAAAGCAATCCAGCAGGTCTCCACAGCCATCCTCAGGCCCTAATCTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCAATCCAGCAGGTCTCCACAGCCATCCTCAGGCCCTAATCTACT  300

seq1  ACCTCATGGGTTGGGGATGGGCCTGCATTAAGCTCCAGGGAGCAAAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATGGGTTGGGGATGGGCCTGCATTAAGCTCCAGGGAGCAAAGAGG  350

seq1  AAGACACGTGCCAGCCAAATCTGAGGAGAAGGAAACCTCCCGACTGGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACGTGCCAGCCAAATCTGAGGAGAAGGAAACCTCCCGACTGGTTC  400

seq1  GTTCAGAAGCTGCAAGCTTTGCTCCCCAAGCATTTCACAAGGAAGAGCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAAGCTGCAAGCTTTGCTCCCCAAGCATTTCACAAGGAAGAGCGG  450

seq1  CTAGTGTCCCAAAATGACACTTAACTCATGAGCGAGAAAATGTGGAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTCCCAAAATGACACTTAACTCATGAGCGAGAAAATGTGGAACTG  500

seq1  TCACCAAGCTACCTGATCTGGCAAGCAACTCTTCTCGTGGCCTTGCAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAAGCTACCTGATCTGGCAAGCAACTCTTCTCGTGGCCTTGCAATC  550

seq1  CCACAAAGGTGACAGGACTCTTTCTTCAGCATATGGGATAACGGTTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAGGTGACAGGACTCTTTCTTCAGCATATGGGATAACGGTTCCTC  600

seq1  ACCCACTCCTCTCGCCTGGTCTCAAGCTACCAGTGTGTGCGTGCCTCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTCCTCTCGCCTGGTCTCAAGCTACCAGTGTGTGCGTGCCTCAGG  650

seq1  GGTAGCTCTACCTCCTCCCAATTTCACACACTGAACTCCAGGCCAATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCTCTACCTCCTCCCAATTTCACACACTGAACTCCAGGCCAATCAT  700

seq1  CCTCATTTCCCTCCTTCCCACTCATTTTGTACATCTGCCATAGACACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTTCCCTCCTTCCCACTCATTTTGTACATCTGCCATAGACACAGA  750

seq1  AAGAGGTTTCTGACCCAAAGCCCAAGGGCTAA--CCTTCCAGAAGTTTTA  798
      ||||||||||||||||||||||||||||||||  | ||||||||||||||
seq2  AAGAGGTTTCTGACCCAAAGCCCAAGGGCTAAACCTTTCCAGAAGTTTTA  800

seq1  TCAACTCCCGT-GGCACCTACAGGAATTTAATCTTTC-TTTCGTACACCT  846
      ||||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  TCAACTCCCGTGGGCACCTACAGGAATTTAATCTTTCTTTTCGTACACCT  850

seq1  GTTTATAACAAAATATGTAAATCAAGAAAATCTATCAGGTACCATCCAGC  896
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATAAC-AAATATGTAAATCAAGAAAATCTATCAGGTACCATCCAGC  899

seq1  ACGGCTTGAGTGG-TTCTAGAAAA--GACCAGAACATTTCAACCCACCAG  943
      ||||||||||||| ||||||||||   ||||||| ||||| |||||||||
seq2  ACGGCTTGAGTGGATTCTAGAAAAAGAACCAGAATATTTC-ACCCACCAG  948

seq1  TGAAATACACAGGCTGAGGATG-CACAG-AGAGGAACA-TGGAGGGAGAA  990
      |||||||||||||||||||||| ||||| |||||| || || ||||||||
seq2  TGAAATACACAGGCTGAGGATGCCACAGAAGAGGATCATTGAAGGGAGAA  998

seq1  ATGTCTGTC-TCTACC  1005
      ||||||||| ||||||
seq2  ATGTCTGTCTTCTACC  1014