BAC Information

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BAC

Clone NameB6Ng01-088N05
Chromosome8 (Build37)
Map Location 48,250,745 - 48,405,202
singlet/doubletdoublet
Overlap geneStox2, 4930448N21Rik
Upstream gene4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt, LOC667337, Acsl1, Mlf1ip, Ccdc111, Casp3, Irf2, Enpp6
Downstream geneD030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2, LOC100040113, Dctd, Odz3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088N05.bB6Ng01-088N05.g
ACCDH901574DH901575
length6541,033
definitionDH901574|Mus musculus domesticus DNA, BAC clone: B6Ng01-088N05, 5' end.DH901575|Mus musculus domesticus DNA, BAC clone: B6Ng01-088N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,404,545 - 48,405,202)(48,250,745 - 48,251,791)
sequence
gaattcttcaagttggaagtgcctgggggaaacattccaccgaaaagcca
gagccctcaaggtcacctatgagagcctggatctactgagcctttggggt
tacatattatatccacatcatagttatactgtgtgttttgtaaacaggtg
tcaggtaagctctcccttcaccaaggaaaagaggaggagagatgggggag
aggctgtatgagaggggctgtgatcaggatgcaaagcaaacaaaccaacc
aacaaataaataaacaaatgggaaaaagtctctctatagtcattaaggat
gtaaagtttcttatgttaaaacttgcacttggttgatatggaacctgtgg
gtagaaagagcagcccagtgttggcggtccactcctttaatccctgcatt
taagaggtagagggaagccaatctatgaggtccaggccattacacttgtt
ctactatggtatttagtctgggctcctccccacattcccctcccaacacc
caggtgtgcgcgacgcactatgcaatggacagctcatgcccattctctta
ctctctcctcttgctcctgttccttacccttttcctctcattcccttctt
tccccctctctccatgatcatggcttgcctctcctgctctcctctactac
ttcc
gaattcatggtgatcctgattatgctaaagcgcatgccttacccacactg
tctaagcaagctcacaaagggatgagctgactggcactccctagatacac
atcactatattgtgttttcactggcacacccttgctctccactgctgcta
cctccctgtcttagtgagggctttactgctatgaacagacaccaggacca
aggcaactcttaaaaggacaacatttacttgaggctggtttacaggttca
gaggttcaggccattatcctcaaggcaggaatcatggcagcatccaggca
cacatggtacaggaggagctaagagttctacatgttcatctgaaggctga
tagcagaatactggcttccaggaagctaggatgaaggtcttaaagcccac
accctcagtgacacacctaatccaacaaggccacacccattccaacaggg
gcataccctctttcagtgccatgccctaagccaagcatacacaaaccatc
acactccctttcctgacagtctcttttagaaagatgccccagatataata
aaaacagaggcagcctagcatagtggcacgagcctttaatcccagcattc
aggagacagaggaaggatggtctctgagttcaaggccagcttagtgtaca
aagtgagttccagggcagctagggctatgtagaaagactctgtactgtaa
aataaaattcaaaattattttaaaaaaaacaaaaaaccaagctaaagcca
aacaaataaacccaggaggcaggaaaaccaggaagagacttgaatttata
caggtgagactcaacctgttctaagcggaaaataactggggtggtagaat
agaaggtaaagcagacacattcaggagaagaactaggaggttagaagaac
acagcctgttaatgagtcatggggttggggaagcaaaggtgtccttctag
catgtgctttgacatgagttgtcataaatcacggtgaactagggatacgg
aaagaaattgtgcttatggggaatattaaggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_48404545_48405202
seq2: B6Ng01-088N05.b_48_701 (reverse)

seq1  GGAAGTAGAAGAGGAAGAGGAAGGAGAGGCCGGCCATGAGCATGGAGAGA  50
      |||||||| ||||| ||| | |||||||||  ||||||| ||||||||||
seq2  GGAAGTAGTAGAGG-AGA-GCAGGAGAGGCAAGCCATGATCATGGAGAGA  48

seq1  GGGGGAGGGAAGGGAATGGGAGGAGAGAGGGTAAGGAACAGGAGCAAGAG  100
      ||||||  |||||||||| ||||| | |||||||||||||||||||||||
seq2  GGGGGAAAGAAGGGAATGAGAGGA-AAAGGGTAAGGAACAGGAGCAAGAG  97

seq1  GAGAGAGTAAGAGAAAGGGGGCAAGCTGTCCCTTTTATAGTGTGTCAGGC  150
      ||||||||||||||| |||    |||||||| ||  |||||| |||  ||
seq2  GAGAGAGTAAGAGAATGGGCATGAGCTGTCCATTGCATAGTGCGTCGCGC  147

seq1  ACACCTGGCTGTTGGCAGGTAACTGTGGGGCGGAGCCTAGACTAAATGCC  200
      |||||||| |||||| |||  | ||||||| |||||| ||||||||| ||
seq2  ACACCTGGGTGTTGGGAGGGGAATGTGGGGAGGAGCCCAGACTAAATACC  197

seq1  ATCATAGACCAAGTTTAATGGCCTTGACCTCAGAGATTTGCTTCCCTCTG  250
      ||  |||| ||||| ||||||||| ||||||| ||||| |||||||||| 
seq2  ATAGTAGAACAAGTGTAATGGCCTGGACCTCATAGATTGGCTTCCCTCTA  247

seq1  CCTCTTAAATCTTGGGATTAAAGGAGTGGGCCACCAACACTGGGCTGCTC  300
      ||||||||||   |||||||||||||||| || |||||||||||||||||
seq2  CCTCTTAAATGCAGGGATTAAAGGAGTGGACCGCCAACACTGGGCTGCTC  297

seq1  TTTCTACCCACAGGTTCCATATCAACCAACTGCAAGTTTTAACATAAGAA  350
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTCTACCCACAGGTTCCATATCAACCAAGTGCAAGTTTTAACATAAGAA  347

seq1  ACTTTACATCCTTAATGACTATAGAGAGACTTTTTCCCATTTGTTTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACATCCTTAATGACTATAGAGAGACTTTTTCCCATTTGTTTATTT  397

seq1  ATTTGTTTGTTTGTTTGTTTGCTTTGCATCCTGATCACAGCCCCTCTCAT  450
      ||||||| ||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTGGTTGGTTTGTTTGCTTTGCATCCTGATCACAGCCCCTCTCAT  447

seq1  ACAGCCTCTCCCCCATCTCTCCTCCTCTTTTCCTTGGTGAAGGGAGAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTCTCCCCCATCTCTCCTCCTCTTTTCCTTGGTGAAGGGAGAGCT  497

seq1  TACCTGACACCTGTTTACAAAACACACAGTATAACTATGATGTGGATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGACACCTGTTTACAAAACACACAGTATAACTATGATGTGGATATA  547

seq1  ATATGTAACCCCAAAGGCTCAGTAGATCCAGGCACTGATAGGTGACCTTG  600
      ||||||||||||||||||||||||||||||||| || |||||||||||||
seq2  ATATGTAACCCCAAAGGCTCAGTAGATCCAGGCTCTCATAGGTGACCTTG  597

seq1  AGGGCTCTGGCTTTTCGGTGGAATGATTGGGGGCAGGCACTTCCAACTTG  650
      ||||||||||||||||||||||||| ||     |||||||||||||||||
seq2  AGGGCTCTGGCTTTTCGGTGGAATG-TTTCCCCCAGGCACTTCCAACTTG  646

seq1  AAGAATTC  658
      ||||||||
seq2  AAGAATTC  654

seq1: chr8_48250745_48251791
seq2: B6Ng01-088N05.g_71_1103

seq1  GAATTCATGGTGATCCTGATTATGCTAAAGCGCATGCCTTACCCACACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGTGATCCTGATTATGCTAAAGCGCATGCCTTACCCACACTG  50

seq1  TCTAAGCAAGCTCACAAAGGGATGAGCTGACTGGCACTCCCTAGATACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCAAGCTCACAAAGGGATGAGCTGACTGGCACTCCCTAGATACAC  100

seq1  ATCACTATATTGTGTTTTCACTGGCACACCCTTGCTCTCCACTGCTGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTATATTGTGTTTTCACTGGCACACCCTTGCTCTCCACTGCTGCTA  150

seq1  CCTCCCTGTCTTAGTGAGGGCTTTACTGCTATGAACAGACACCAGGACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTGTCTTAGTGAGGGCTTTACTGCTATGAACAGACACCAGGACCA  200

seq1  AGGCAACTCTTAAAAGGACAACATTTACTTGAGGCTGGTTTACAGGTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACTCTTAAAAGGACAACATTTACTTGAGGCTGGTTTACAGGTTCA  250

seq1  GAGGTTCAGGCCATTATCCTCAAGGCAGGAATCATGGCAGCATCCAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCAGGCCATTATCCTCAAGGCAGGAATCATGGCAGCATCCAGGCA  300

seq1  CACATGGTACAGGAGGAGCTAAGAGTTCTACATGTTCATCTGAAGGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTACAGGAGGAGCTAAGAGTTCTACATGTTCATCTGAAGGCTGA  350

seq1  TAGCAGAATACTGGCTTCCAGGAAGCTAGGATGAAGGTCTTAAAGCCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAATACTGGCTTCCAGGAAGCTAGGATGAAGGTCTTAAAGCCCAC  400

seq1  ACCCTCAGTGACACACCTAATCCAACAAGGCCACACCCATTCCAACAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAGTGACACACCTAATCCAACAAGGCCACACCCATTCCAACAGGG  450

seq1  GCATACCCTCTTTCAGTGCCATGCCCTAAGCCAAGCATACACAAACCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACCCTCTTTCAGTGCCATGCCCTAAGCCAAGCATACACAAACCATC  500

seq1  ACACTCCCTTTCCTGACAGTCTCTTTTAGAAAGATGCCCCAGATATAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCCTTTCCTGACAGTCTCTTTTAGAAAGATGCCCCAGATATAATA  550

seq1  AAAACAGAGGCAGCCTAGCATAGTGGCACGAGCCTTTAATCCCAGCATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGAGGCAGCCTAGCATAGTGGCACGAGCCTTTAATCCCAGCATTC  600

seq1  AGGAGACAGAGGAAGGATGGTCTCTGAGTTCAAGGCCAGCTTAGTGTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACAGAGGAAGGATGGTCTCTGAGTTCAAGGCCAGCTTAGTGTACA  650

seq1  AAGTGAGTTCCAGGGCAGCTAGGGCTATGTAGAAAGACTCTGTACTGAAA  700
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  AAGTGAGTTCCAGGGCAGCTAGGGCTATGTAGAAAGACTCTGTACTG--T  698

seq1  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAGCTAAAGC  750
      |||| ||||   ||||  |    |||||||| |||||| |||||||||||
seq2  AAAATAAAATTCAAAATTATTTTAAAAAAAACAAAAAACCAAGCTAAAGC  748

seq1  CAAACAAATAAACCCAGGAGGCAGGAAAACCAGGAAGAGACTTGAAATAA  800
      |||||||||||||||||||||||||||||||||||||||||||||| | |
seq2  CAAACAAATAAACCCAGGAGGCAGGAAAACCAGGAAGAGACTTGAATTTA  798

seq1  TACAGGTGAGACTCAA-CTGTTCTAAGCGG-ACATAACTGGGGTGGTAGA  848
      |||||||||||||||| ||||||||||||| | |||||||||||||||||
seq2  TACAGGTGAGACTCAACCTGTTCTAAGCGGAAAATAACTGGGGTGGTAGA  848

seq1  ATAGAAGGT-AAGCAGACACATTCAGGAG-AGAACTAGGAGGTTAG-AGA  895
      ||||||||| ||||||||||||||||||| |||||||||||||||| |||
seq2  ATAGAAGGTAAAGCAGACACATTCAGGAGAAGAACTAGGAGGTTAGAAGA  898

seq1  ACACAGCCTGGTAATGGAGTCCATGGGGTGTGGGAAGCAGAAGGTGTTCA  945
      |||||||||| |||| |||| ||||||||  |||||||| |||||||   
seq2  ACACAGCCTGTTAAT-GAGT-CATGGGGTTGGGGAAGCA-AAGGTGT--C  943

seq1  CTTCTAGGCATGTGGCTTTGACAATGAAGTTGTCAATAAAATCACCGGTG  995
      |||||| |||||| |||||||| ||| ||||||||   |||||| |||||
seq2  CTTCTA-GCATGT-GCTTTGAC-ATG-AGTTGTCA--TAAATCA-CGGTG  986

seq1  AGACTAGGGATACGGAAAGAAGATTTGGTGCTTATGGGGGAAATATGAGG  1045
      | ||||||||||||||||||| |||  |||||||||||| | || | |||
seq2  A-ACTAGGGATACGGAAAGAA-ATT--GTGCTTATGGGGAATAT-TAAGG  1031

seq1  TT  1047
      ||
seq2  TT  1033