BAC Information

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BAC

Clone NameB6Ng01-089A04
Chromosome8 (Build37)
Map Location 29,665,141 - 29,790,551
singlet/doubletdoublet
Overlap geneLOC100042598, Unc5d
Upstream geneGm1698, EG666422, LOC666430, EG666446
Downstream geneLOC100041237
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089A04.bB6Ng01-089A04.g
ACCDH901707DH901708
length1,152987
definitionDH901707|Mus musculus domesticus DNA, BAC clone: B6Ng01-089A04, 5' end.DH901708|Mus musculus domesticus DNA, BAC clone: B6Ng01-089A04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,665,141 - 29,665,919)(29,790,001 - 29,790,551)
sequence
gaattcatgatcactaagtcatctctacagtggatactggagggaatatt
taagactaaagaggagaaacaaacaagaggacacaaaaataagggaaata
tcaagacagctaagcatataagaagttttttttaaatcaatgaaattata
agaattattacacagattctataataatgttgaatattattggtcttcaa
tttctggataaaaagactcagactagcagattggatcagaaaacaggatg
tatcttttagctaacttcaagaaacgtgcctgatcatcaaagatatacat
actcttagatagggtgcaaaaatgtattctaagcaagtggaacaaggact
caagaagatgggtataactgttctaaataccagacaaagtagaccaaaat
aaaagttgttaaaataaacaaagtcacttcatgtaaattaaagtaccaat
tcatttaaaggacactgcaattttaaatacatatgcaccaagttcaggta
aacccaatttcataaatcaaatactactatatataaaatcagagattaat
tccaacacagtaatggttggagactttaatatcccattctcaacaataga
ttggtagatcatctcaataataattaaaaaaataaacacagaaatattca
tgacatcatgagtcaaatggacctaatagacatttacaagaacattccat
tgaagcactaaaaaatacacattcattaggttctgtggatttgtgggaaa
aaaatagatcatatggtaggacagaagacagatttttaacaaatacagga
agatgaaataagttcttgtaatctatctgatcacaaaggattacaagtta
agttcacaaactcctgtagactgaataatctgaacatctaagggaaagga
atgaacatgaaaacacaacttaccaaactcttttaacatacaatgaaaac
agtcttaaatttttatatttatattttgtattataaaatataattgtatt
ttatattatataaattagtatatttactaagtataaatatatttatattt
aaatcaaatatacttctattatttatttatatttcatcaaatatttattt
ttattttaacactaatataaaagaagtttataatgtatacctatattctt
tt
gaattctttaacagcacataactttgctacactttgtcctctgcacaatt
cctgtgcagttcctttttgctcagtgagcattgttggtgatttggttttg
ttttgtttggagcaacaggatgggtttttcttttcttgttgcctgccccc
ccccaccccatcccatctctctctcttttgggataaatgaatgcagtaac
aattgccctgaaaacacactaatcacagtgcttcccgttctattctttta
aaatgttttgatgagcactatttgcacctgctattcaagtcaacaaggaa
aatctattcattcagtactgtcctaaaaaaagatttagaagtgttttgat
tgcacacagtggcatgaagaaacaggagagaagacattcttatgccagtt
ctcatgtctttctaaaaggaagactgtctctacagcggttattaatctcc
tacattccagtgttcagagggaaaaaatacaggaatcttagcaagtcata
tcaaaggaggtattttcaaataagtggccagtactatttttaaaaatttt
ttattaggcattttcctcatttacatttccaatgctatcccaaaagtccc
ccatacctaccccccactccccctttttggccctggcattcccctgtact
ggggcatataaagtttgcaagtccaatgggcatctctttgcagtgatggc
cgactaggccatcttttgatacatatgcagctagagtcaagagctccggg
gtactggttagttcatattgttgttccacctatagggttgcagatccctt
tagctccttgggtactttctctagctcctccattgggggccctgtgatcc
atccaatagctgactgtgagcatccacttctgtgtttgctaggccccggc
atagtctcacaagagacagctatatcaggtcctttcagcaaatcttgcta
gtgtatgcatggtgtcagcatttggagctgattatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_29665141_29665919
seq2: B6Ng01-089A04.b_427_1197

seq1  AGACAAAGTAGACCAAAATAAAAGTTGTTAAAATAAACAAAGTCACTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAGTAGACCAAAATAAAAGTTGTTAAAATAAACAAAGTCACTTCA  50

seq1  TGTAAATTAAAGTACCAATTCATTTAAAGGACACTGCAATTTTAAATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATTAAAGTACCAATTCATTTAAAGGACACTGCAATTTTAAATACA  100

seq1  TATGCACCAAGTTCAGGTAAACCCAATTTCATAAATCAAATACTACTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACCAAGTTCAGGTAAACCCAATTTCATAAATCAAATACTACTATA  150

seq1  TATAAAATCAGAGATTAATTCCAACACAGTAATGGTTGGAGACTTTAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATCAGAGATTAATTCCAACACAGTAATGGTTGGAGACTTTAATA  200

seq1  TCCCATTCTCAACAATAGATTGGTAGATCATCTCAATAATAATTAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTCTCAACAATAGATTGGTAGATCATCTCAATAATAATTAAAAAA  250

seq1  ATAAACACAGAAATATTCATGACATCATGAGTCAAATGGACCTAATAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACAGAAATATTCATGACATCATGAGTCAAATGGACCTAATAGAC  300

seq1  ATTTACAAGAACATTCCATTGAAGCACTAAAAAATACACATTCATTAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAAGAACATTCCATTGAAGCACTAAAAAATACACATTCATTAGGT  350

seq1  TCTGTGGATTTGTGGGAAAAAAATAGATCATATGGTAGGACAGAAGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGATTTGTGGGAAAAAAATAGATCATATGGTAGGACAGAAGACAG  400

seq1  ATTTTTAACAAATACAGGAAGATGAAATAAGTTCTTGTAATCTATCTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAACAAATACAGGAAGATGAAATAAGTTCTTGTAATCTATCTGAT  450

seq1  CACAAAGGATTACAAGTTAAGTTCACAAACTCCTGTAGACTGAATAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGGATTACAAGTTAAGTTCACAAACTCCTGTAGACTGAATAATCT  500

seq1  GAACATCTAAGGGAAAGGAATGAACATGAAAACACAACTTACCAAACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCTAAGGGAAAGGAATGAACATGAAAACACAACTTACCAAACTCT  550

seq1  TTTAACATACAATGAAAACAGTCTTAAATTTTTATATTTTATATTTTTGT  600
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  TTTAACATACAATGAAAACAGTCTTAAATTTTTATA-TTTATA-TTTTGT  598

seq1  ATTATAAAATATAATTGTATTTTATATTATATAAATTAGTATATTTACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAAATATAATTGTATTTTATATTATATAAATTAGTATATTTACTA  648

seq1  AGTATAAATATATTTATATTTAAATCAAATAATACTTCTATTATTTAATT  700
      |||||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  AGTATAAATATATTTATATTTAAATCAAAT-ATACTTCTATTATTT-ATT  696

seq1  TATATTTAAATCAAATATTTATTTTATATTTAACACTTATATTAAAATAG  750
      |||||||  ||||||||||||||||   ||||||||| |||| |||  ||
seq2  TATATTT-CATCAAATATTTATTTTTATTTTAACACTAATATAAAAGAAG  745

seq1  AATTTATATATGTATACTTATATTCTTTT  779
        |||||| |||||||| |||||||||||
seq2  --TTTATA-ATGTATACCTATATTCTTTT  771

seq1: chr8_29790001_29790551
seq2: B6Ng01-089A04.g_71_621 (reverse)

seq1  AAAAATTTTTAAAAATAGTACTGGCCACTTATTTGAAAATACCTCCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTTTAAAAATAGTACTGGCCACTTATTTGAAAATACCTCCTTTG  50

seq1  ATATGACTTGCTAAGATTCCTGTATTTTTTCCCTCTGAACACTGGAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACTTGCTAAGATTCCTGTATTTTTTCCCTCTGAACACTGGAATGT  100

seq1  AGGAGATTAATAACCGCTGTAGAGACAGTCTTCCTTTTAGAAAGACATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATTAATAACCGCTGTAGAGACAGTCTTCCTTTTAGAAAGACATGA  150

seq1  GAACTGGCATAAGAATGTCTTCTCTCCTGTTTCTTCATGCCACTGTGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGCATAAGAATGTCTTCTCTCCTGTTTCTTCATGCCACTGTGTGC  200

seq1  AATCAAAACACTTCTAAATCTTTTTTTAGGACAGTACTGAATGAATAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAACACTTCTAAATCTTTTTTTAGGACAGTACTGAATGAATAGAT  250

seq1  TTTCCTTGTTGACTTGAATAGCAGGTGCAAATAGTGCTCATCAAAACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGTTGACTTGAATAGCAGGTGCAAATAGTGCTCATCAAAACATT  300

seq1  TTAAAAGAATAGAACGGGAAGCACTGTGATTAGTGTGTTTTCAGGGCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGAATAGAACGGGAAGCACTGTGATTAGTGTGTTTTCAGGGCAAT  350

seq1  TGTTACTGCATTCATTTATCCCAAAAGAGAGAGAGATGGGATGGGGTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTGCATTCATTTATCCCAAAAGAGAGAGAGATGGGATGGGGTGGG  400

seq1  GGGGGGCAGGCAACAAGAAAAGAAAAACCCATCCTGTTGCTCCAAACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGCAGGCAACAAGAAAAGAAAAACCCATCCTGTTGCTCCAAACAAA  450

seq1  ACAAAACCAAATCACCAACAATGCTCACTGAGCAAAAAGGAACTGCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACCAAATCACCAACAATGCTCACTGAGCAAAAAGGAACTGCACAG  500

seq1  GAATTGTGCAGAGGACAAAGTGTAGCAAAGTTATGTGCTGTTAAAGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTGCAGAGGACAAAGTGTAGCAAAGTTATGTGCTGTTAAAGAATT  550

seq1  C  551
      |
seq2  C  551