BAC Information

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BAC

Clone NameB6Ng01-089F17
Chromosome8 (Build37)
Map Location 88,253,801 - 88,254,727
singlet/doubletsinglet
Overlap geneItfg1
Upstream geneNfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2, Neto2
Downstream geneLOC100040798, Phkb, LOC671665, LOC100040165, Abcc12, Lonp2, Siah1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089F17.bB6Ng01-089F17.g
ACCDH901956DH901957
length1,1161,169
definitionDH901956|Mus musculus domesticus DNA, BAC clone: B6Ng01-089F17, 5' end.DH901957|Mus musculus domesticus DNA, BAC clone: B6Ng01-089F17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagaacaccaaagaccaccagagtaaaacctccccacatcatagc
taaatattaagtctacaaaacaaaggacatgttttgaaagctgtaagaga
aacaagtaaatgaagtaaattacataatataaagacagtctcattggagt
aacactacatttcacagcagaaactttcaaagtcaggagggcttggaatt
ctgttttccaagctctaaaaggcaaggaatgcaaactcagactactacac
ccagcaaatcatgtcataactgaaaagcaaaacaacagatgctctgctga
cgacttggacaaaagataacacttagtctgttggtggaaatgtaactagt
ccagtcactatggaaatcagtatggaagttcctcaaaaaactaaaactac
aatatagcctgggtctagcactcctgtgcatttatttatacaaagaactc
taagtcaatacatcacagtacacttactgcatatgaatgtttactacaga
tcttttcacaagagataaactatggaaccaaccaaaatgtccaacaacag
ataaagaaaatatgctatttatgtacaatggaatttcttctagccgtgga
gttaacttcaagtagaaataagtgaagagaatcttatcacgggaagtaag
cctgtctgcgaaagacacatatccacattttctctccctttaggccatga
aagcagaagcaatcctgatatcatatggagagtaatggggaggacaacag
gaagatgctcagtgtgcacttgtatttgtgagaatgtcttcagtgtaaca
cagtggtgtgtgcagtgactgcaatcctggtttgcactatacacggtact
ttctaggcaacacaccaagaacgttcttattatggcagtgcttgtgctgt
tagtatttaaatacttcattttgaagctggggagcagtctcaaattgtgc
tcatgcactgtacttgtgacagtgcctgcttgctagtgcatttctactga
ctgggacactgcattcatatgtctttagttgttcttctatgtttagtctt
taatcacgtggggctttctctcctcttccagtagatgttcactgttgcac
ttttcaggtataaaga
gaattctcaccagaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatagctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccatcatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctatctcttgtgagactatgcccgggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctctca
tggaggagctagagaaagtagccaaggagctaaaggatctgcaaccctat
agttgcaacaacattatgaactacagtacccggagctctggactctagct
gcatatatatcaaagatggctagtcgcatcactggaagagaagtccaatg
actgcaccttattgcccagtcacggtaacctcaggctaacggggatgtgg
tggctggggaagtgtggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_88253801_88254727
seq2: B6Ng01-089F17.b_236_1161

seq1  GCTTGGAATTCTGTTTTCCAAGCTCTAAAAGGCAAGGAATGCAAACTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGAATTCTGTTTTCCAAGCTCTAAAAGGCAAGGAATGCAAACTCAG  50

seq1  ACTACTACACCCAGCAAATCATGTCATAACTGAAAAGCAAAACAACAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTACACCCAGCAAATCATGTCATAACTGAAAAGCAAAACAACAGAT  100

seq1  GCTCTGCTGACGACTTGGACAAAAGATAACACTTAGTCTGTTGGTGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCTGACGACTTGGACAAAAGATAACACTTAGTCTGTTGGTGGAAA  150

seq1  TGTAACTAGTCCAGTCACTATGGAAATCAGTATGGAAGTTCCTCAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTAGTCCAGTCACTATGGAAATCAGTATGGAAGTTCCTCAAAAAA  200

seq1  CTAAAACTACAATATAGCCTGGGTCTAGCACTCCTGTGCATTTATTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACTACAATATAGCCTGGGTCTAGCACTCCTGTGCATTTATTTATA  250

seq1  CAAAGAACTCTAAGTCAATACATCACAGTACACTTACTGCATATGAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAACTCTAAGTCAATACATCACAGTACACTTACTGCATATGAATGT  300

seq1  TTACTACAGATCTTTTCACAAGAGATAAACTATGGAACCAACCAAAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTACAGATCTTTTCACAAGAGATAAACTATGGAACCAACCAAAATGT  350

seq1  CCAACAACAGATAAAGAAAATATGCTATTTATGTACAATGGAATTTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAACAGATAAAGAAAATATGCTATTTATGTACAATGGAATTTCTTC  400

seq1  TAGCCGTGGAGTTAACTTCAAGTAGAAATAAGTGAAGAGAATCTTATCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCGTGGAGTTAACTTCAAGTAGAAATAAGTGAAGAGAATCTTATCAC  450

seq1  GGGAAGTAAGCCTGTCTGCGAAAGACACATATCCACATTTTCTCTCCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTAAGCCTGTCTGCGAAAGACACATATCCACATTTTCTCTCCCTT  500

seq1  TAGGCCATGAAAGCAGAAGCAATCCTGATATCATATGGAGAGTAATGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCATGAAAGCAGAAGCAATCCTGATATCATATGGAGAGTAATGGGG  550

seq1  AGGACAACAGGAAGATGCTCAGTGTGCACTTGTATTTGTGAGAATGTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAACAGGAAGATGCTCAGTGTGCACTTGTATTTGTGAGAATGTCTT  600

seq1  CAGTGTAACACAGTGGTGTGTGCAGTGACTGCAATCCTGGTTTGCACTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTAACACAGTGGTGTGTGCAGTGACTGCAATCCTGGTTTGCACTAT  650

seq1  ACACGGTACTTTCTAGGCAACACACCAAGAACGTTCTTATTATGGCAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGTACTTTCTAGGCAACACACCAAGAACGTTCTTATTATGGCAGTG  700

seq1  CTTGTGCTGTTAGTATTTAAATACTTCATTTTGAAGCTGGGGAGCAGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCTGTTAGTATTTAAATACTTCATTTTGAAGCTGGGGAGCAGTCT  750

seq1  CAAATTGTGCTCATGCACTGTACTTGTGACAGTGCCTGCTTGCTAGTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGTGCTCATGCACTGTACTTGTGACAGTGCCTGCTTGCTAGTGCA  800

seq1  TTTCTACTGACT-GGACACTGCATTCATATGTCTTTAGTTGTTCTTCTAT  849
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTCTACTGACTGGGACACTGCATTCATATGTCTTTAGTTGTTCTTCTAT  850

seq1  GTTTAGTTCTTTATCACGTGTGCTTTCCTCT-CTCTCCCAGTAGATGTTC  898
      |||||||  || |||||||| |  || |||| |||| |||||||||||||
seq2  GTTTAGTCTTTAATCACGTGGGGCTTTCTCTCCTCTTCCAGTAGATGTTC  900

seq1  ACTGTTGCACTGTTTCAGTGTATTAAAGA  927
      ||||||||||| |||||| ||| ||||||
seq2  ACTGTTGCACT-TTTCAG-GTA-TAAAGA  926