BAC Information

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BAC

Clone NameB6Ng01-089L04
Chromosome8 (Build37)
Map Location 81,169,692 - 81,285,633
singlet/doubletdoublet
Overlap geneSlc10a7
Upstream geneEdnra, EG622803, Ttc29, Pou4f2, LOC100039422, Rbmxrt, LOC100039466
Downstream geneLsm6, EG666340, EG666346, D630040G17Rik, 1700011L22Rik, Mmaa, A630049P17, Smad1, LOC666378, LOC666388, LOC666392, Otud4, Tpd52-ps, Abce1, Anapc10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089L04.bB6Ng01-089L04.g
ACCDH902208DH902209
length1,1231,166
definitionDH902208|Mus musculus domesticus DNA, BAC clone: B6Ng01-089L04, 5' end.DH902209|Mus musculus domesticus DNA, BAC clone: B6Ng01-089L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,169,692 - 81,170,816)(81,284,447 - 81,285,633)
sequence
gaattccaaacgtgtcaatggaggctgagtccatatatttttaatctata
agagaaagagatatagtatagagttgtaggtttgagatttatcaaatcct
gacttcaaaaatcaatgtttctcttgagcaaattagctaccctctgtggg
caatggcttctaagttcgtaagtgcatcatctcttgccttggctcaaaac
tgattccgcctgcagagtgtgtagtggcttgcaagtatgttagcaagtgt
acctagagaccgaaaactcggttgaggacactgagatagatggctccatt
gtcaagtgcttactgtgcaagcatggaaggcctgtctttagatctcagct
cacataaaactctaggcatggtgacatacagctgtgagcccagtgctggg
agctgcaaacacgagatgaccctagagcttgttggcctgctagtcttgcc
tggagagatggctgagaggttgagagcatttgatcttggagaggaccagg
gtttgattcccagcacccacatggtggttcacaactgtctgtaactccag
ttccaggagatccagtgccctcttctggcctttgtgggcatagtgtacat
acatgatgcagggaaaacactaaaaaacataagattctttaaaattctcc
acagaaaggtggagagtggtaaagtaagttatccaacattgacctctgac
ttctacacacacacacacacacacacacacacacacacacacgactgcac
agaaaacaacccttgattgagatagtagtattctgctttggcatattcct
aagaacagaaaatattagatggagcacaaataaagcttagtccctcatga
actggcccaggatgaagccaaacaaaaatggtgccttcattgctctgcat
ggagctcaaacccagggcctgtgtataggcaagcactttagcaccaagtg
gtatcccccacacacgaaaaagtggaaaggctgcaagtgtgcttcatgca
atggagagagacccttagcacatcagcatattcagcaggaagagatactg
gaagctaccactgacggaggcccgggcagaagcagctgtcgaattggacc
cagcaccctgagctagcatgtgc
gaattccagaccatccatttactacgtgtctgagctaggatgctgctttc
ctcaagtttctgagagaagaaaacactggaagaaaagagtgtcatgcaat
ggcccaagaaatgtttaacaacgctgtctgtgtgagcatagcctgtcaac
cactgcagttgaccagcatgcctccctgccaagatccatgattccctcct
gcttcaacatccctcatctgactctgatcctcaaaactggcccaattttg
caaatgcattattcttcccagctttcccaccttccccacatggtccagta
aataccatttctcctctttccaaccaggcccactcagaaagcctccaaac
agaaaagcccagttccgcattcctgacagctctcccaatctccctcacct
gaagtcaccagtgatctaagccccacctcctctatacctcatcctgactc
tcccagcccttctacacatgcccagcatgatgcagatacatcattttcct
tcacctccagtctataaaagaagcaccttccaggccaccttctgcctgcg
cctctctctggtctcatcctttgagactgctgaacttgtctgggagcccg
tttctaaataaacctgccctttttttttttacttttaattcagctgaatt
gacttatttcttcagtggagaaaacccatcaattaccaaggctagggaga
tggctgagcagttgagtgtgctcttgcagaggaatagagtttggcagcac
ccacagccacttttaactcagtttccagggaaccaatgcctggggcctca
gcaggcactcatgtatgcattacacattcatgtatgtatcaatcaccctt
acacacatacacgtactaagaaaaaaaaagtcttttaaaaataaagcaaa
gaaaaagaggctaattgtctaggacatgtgtccagagtcggaatggctga
gtggaacttgaatccagacagtagtcgctctgcagtgcgctcttgcccat
ccacggcctatcttgttgctggggtcctcacatttgaaatggtgcccagt
aactttcattgcccaacaacataactagatgcagcgggaatcaatgtaga
agcatgactttgtctcatctcaggcatctgaagtctttatttcacagaaa
gctaaggttaatatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_81169692_81170816
seq2: B6Ng01-089L04.b_46_1168

seq1  GAATTCCAAACGTGTCAATGGAGGCTGAGTCCATATATTTTTAATCTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACGTGTCAATGGAGGCTGAGTCCATATATTTTTAATCTATA  50

seq1  AGAGAAAGAGATATAGTATAGAGTTGTAGGTTTGAGATTTATCAAATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGAGATATAGTATAGAGTTGTAGGTTTGAGATTTATCAAATCCT  100

seq1  GACTTCAAAAATCAATGTTTCTCTTGAGCAAATTAGCTACCCTCTGTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAAAAATCAATGTTTCTCTTGAGCAAATTAGCTACCCTCTGTGGG  150

seq1  CAATGGCTTCTAAGTTCGTAAGTGCATCATCTCTTGCCTTGGCTCAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCTTCTAAGTTCGTAAGTGCATCATCTCTTGCCTTGGCTCAAAAC  200

seq1  TGATTCCGCCTGCAGAGTGTGTAGTGGCTTGCAAGTATGTTAGCAAGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCGCCTGCAGAGTGTGTAGTGGCTTGCAAGTATGTTAGCAAGTGT  250

seq1  ACCTAGAGACCGAAAACTCGGTTGAGGACACTGAGATAGATGGCTCCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGAGACCGAAAACTCGGTTGAGGACACTGAGATAGATGGCTCCATT  300

seq1  GTCAAGTGCTTACTGTGCAAGCATGGAAGGCCTGTCTTTAGATCTCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTGCTTACTGTGCAAGCATGGAAGGCCTGTCTTTAGATCTCAGCT  350

seq1  CACATAAAACTCTAGGCATGGTGACATACAGCTGTGAGCCCAGTGCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAAACTCTAGGCATGGTGACATACAGCTGTGAGCCCAGTGCTGGG  400

seq1  AGCTGCAAACACGAGATGACCCTAGAGCTTGTTGGCCTGCTAGTCTTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAAACACGAGATGACCCTAGAGCTTGTTGGCCTGCTAGTCTTGCC  450

seq1  TGGAGAGATGGCTGAGAGGTTGAGAGCATTTGATCTTGGAGAGGACCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGATGGCTGAGAGGTTGAGAGCATTTGATCTTGGAGAGGACCAGG  500

seq1  GTTTGATTCCCAGCACCCACATGGTGGTTCACAACTGTCTGTAACTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATTCCCAGCACCCACATGGTGGTTCACAACTGTCTGTAACTCCAG  550

seq1  TTCCAGGAGATCCAGTGCCCTCTTCTGGCCTTTGTGGGCATAGTGTACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGAGATCCAGTGCCCTCTTCTGGCCTTTGTGGGCATAGTGTACAT  600

seq1  ACATGATGCAGGGAAAACACTAAAAAACATAAGATTCTTTAAAATTCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATGCAGGGAAAACACTAAAAAACATAAGATTCTTTAAAATTCTCC  650

seq1  ACAGAAAGGTGGAGAGTGGTAAAGTAAGTTATCCAACATTGACCTCTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGGTGGAGAGTGGTAAAGTAAGTTATCCAACATTGACCTCTGAC  700

seq1  TTCTACACACACACACACACACACACACACACACACACACACGACTGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACACACACACACACACACACACACACACACACACACACGACTGCAC  750

seq1  AGAAAACAACCCTTGATTGAGATAGTAGTATTCTGCTTTAGGCATATTCC  800
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGAAAACAACCCTTGATTGAGATAGTAGTATTCTGCTTT-GGCATATTCC  799

seq1  TAAGAACAGAAAATATTAGATGGAGCACAAAT-AAGCTTAGTCCCTCATG  849
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAAGAACAGAAAATATTAGATGGAGCACAAATAAAGCTTAGTCCCTCATG  849

seq1  AACTGGCCCAGGATGAAGCCAAACAAAAATGGTGCCTTCATTGCTCTGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCCCAGGATGAAGCCAAACAAAAATGGTGCCTTCATTGCTCTGCA  899

seq1  TGGAGCTCAAACCCAGGGCCTGTGTATAGGCAAGCACTTTAGCACCAAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTCAAACCCAGGGCCTGTGTATAGGCAAGCACTTTAGCACCAAGT  949

seq1  GGTATCCCCCACACACGAAAAAGTGG-AAGGCTGCAAGTGTGCTTCATGC  998
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGTATCCCCCACACACGAAAAAGTGGAAAGGCTGCAAGTGTGCTTCATGC  999

seq1  AAATGGAGAGAGACACATAGCACACCAGCATATTCAGCAGGAAGAGATAC  1048
       ||||||||||||| | ||||||| |||||||||||||||||||||||||
seq2  -AATGGAGAGAGACCCTTAGCACATCAGCATATTCAGCAGGAAGAGATAC  1048

seq1  TGGAAAGCTACCACTGACGGAAGCCCGGGCAGGAGCAGCTGTCGGAAATG  1098
      ||| ||||||||||||||||| |||||||||| |||||||||| ||| ||
seq2  TGG-AAGCTACCACTGACGGAGGCCCGGGCAGAAGCAGCTGTC-GAATTG  1096

seq1  GACCCAGCACCCAGAGCTAGCATGTGC  1125
      |||||||||||| ||||||||||||||
seq2  GACCCAGCACCCTGAGCTAGCATGTGC  1123

seq1: chr8_81284447_81285633
seq2: B6Ng01-089L04.g_71_1236 (reverse)

seq1  TAATATTAACACTAAGCTTTCCTGGTGAAAATAATGACTTCAGTATTCCC  50
      |||||||||| || |||||||   ||| |||||| |||||||| || || 
seq2  TAATATTAAC-CTTAGCTTTC--TGTG-AAATAAAGACTTCAG-ATGCC-  44

seq1  CTTGAGTAGAGACAAAGTCATTGCCCTTCTACCATCTGATTTCCCGCTGG  100
        ||||  |||||||||||||    |||||| ||| ||| |||||||| |
seq2  --TGAGATGAGACAAAGTCAT---GCTTCTA-CAT-TGA-TTCCCGCT-G  85

seq1  CATCTAGTTAATGTTGTTGGGCAAATGGAAAGTTACTGGGCACCATTTCA  150
      ||||||||| ||||||||||||||   |||||||||||||||||||||||
seq2  CATCTAGTT-ATGTTGTTGGGCAA--TGAAAGTTACTGGGCACCATTTCA  132

seq1  AATGTGAGGACCCACAGCAACAAGAATAGGGCCGTGGATGGGCAAGAGCG  200
      ||||||||||||| |||||||||| ||| |||||||||||||||||||||
seq2  AATGTGAGGACCC-CAGCAACAAG-ATA-GGCCGTGGATGGGCAAGAGCG  179

seq1  CACTGCAGAGCGACTACTGTCTGGATTCAAGTTCCACTCAGCCATTCCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAGAGCGACTACTGTCTGGATTCAAGTTCCACTCAGCCATTCCGA  229

seq1  CTCTGGACACATGTCCTAGACAATTAGCTTC-TTTTCTTTGCTTTATTTT  299
      |||||||||||||||||||||||||||| || ||||||||||||||||||
seq2  CTCTGGACACATGTCCTAGACAATTAGCCTCTTTTTCTTTGCTTTATTTT  279

seq1  TAAAAGACTTTTTTTTTCTTAAGTACGTGTATGTGTGTAAGGGTGATTGA  349
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAAAAGACTTTTTTTTTCTT-AGTACGTGTATGTGTGTAAGGGTGATTGA  328

seq1  TACATACATGAATGTGTAATGCATACATGAGTGCCTGCTGAGGCCCCAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACATGAATGTGTAATGCATACATGAGTGCCTGCTGAGGCCCCAGG  378

seq1  CATTGGTTCCCTGGAAACTGAGTTAAAAGTGGCTGTGGGTGCTGCCAAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTTCCCTGGAAACTGAGTTAAAAGTGGCTGTGGGTGCTGCCAAAC  428

seq1  TCTATTCCTCTGCAAGAGCACACTCAACTGCTCAGCCATCTCCCTAGCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCCTCTGCAAGAGCACACTCAACTGCTCAGCCATCTCCCTAGCCT  478

seq1  TGGTAATTGATGGGTTTTCTCCACTGAAGAAATAAGTCAATTCAGCTGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATTGATGGGTTTTCTCCACTGAAGAAATAAGTCAATTCAGCTGAA  528

seq1  TTAAAAGTAAAAAAAAAAAGGGCAGGTTTATTTAGAAACGGGCTCCCAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTAAAAAAAAAAAGGGCAGGTTTATTTAGAAACGGGCTCCCAGA  578

seq1  CAAGTTCAGCAGTCTCAAAGGATGAGACCAGAGAGAGGCGCAGGCAGAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCAGCAGTCTCAAAGGATGAGACCAGAGAGAGGCGCAGGCAGAAG  628

seq1  GTGGCCTGGAAGGTGCTTCTTTTATAGACTGGAGGTGAAGGAAAATGATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTGGAAGGTGCTTCTTTTATAGACTGGAGGTGAAGGAAAATGATG  678

seq1  TATCTGCATCATGCTGGGCATGTGTAGAAGGGCTGGGAGAGTCAGGATGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCATCATGCTGGGCATGTGTAGAAGGGCTGGGAGAGTCAGGATGA  728

seq1  GGTATAGAGGAGGTGGGGCTTAGATCACTGGTGACTTCAGGTGAGGGAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAGAGGAGGTGGGGCTTAGATCACTGGTGACTTCAGGTGAGGGAGA  778

seq1  TTGGGAGAGCTGTCAGGAATGCGGAACTGGGCTTTTCTGTTTGGAGGCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGAGCTGTCAGGAATGCGGAACTGGGCTTTTCTGTTTGGAGGCTT  828

seq1  TCTGAGTGGGCCTGGTTGGAAAGAGGAGAAATGGTATTTACTGGACCATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTGGGCCTGGTTGGAAAGAGGAGAAATGGTATTTACTGGACCATG  878

seq1  TGGGGAAGGTGGGAAAGCTGGGAAGAATAATGCATTTGCAAAATTGGGCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAGGTGGGAAAGCTGGGAAGAATAATGCATTTGCAAAATTGGGCC  928

seq1  AGTTTTGAGGATCAGAGTCAGATGAGGGATGTTGAAGCAGGAGGGAATCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGAGGATCAGAGTCAGATGAGGGATGTTGAAGCAGGAGGGAATCA  978

seq1  TGGATCTTGGCAGGGAGGCATGCTGGTCAACTGCAGTGGTTGACAGGCTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTTGGCAGGGAGGCATGCTGGTCAACTGCAGTGGTTGACAGGCTA  1028

seq1  TGCTCACACAGACAGCGTTGTTAAACATTTCTTGGGCCATTGCATGACAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACACAGACAGCGTTGTTAAACATTTCTTGGGCCATTGCATGACAC  1078

seq1  TCTTTTCTTCCAGTGTTTTCTTCTCTCAGAAACTTGAGGAAAGCAGCATC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTCCAGTGTTTTCTTCTCTCAGAAACTTGAGGAAAGCAGCATC  1128

seq1  CTAGCTCAGACACGTAGTAAATGGATGGTCTGGAATTC  1187
      ||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCAGACACGTAGTAAATGGATGGTCTGGAATTC  1166