BAC Information

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BAC

Clone NameB6Ng01-089M10
Chromosome8 (Build37)
Map Location 123,001,811 - 123,179,659
singlet/doubletdoublet
Overlap geneGse1, 4833427B12Rik, LOC668301, 1190005I06Rik, Cox4nb
Upstream geneGm587, Mbtps1, Hsdl1, Lrrc50, Taf1c, EG628061, 4930403J07Rik, Kcng4, Wfdc1, Atp2c2, 4632415K11Rik, Cotl1, BC025816, Usp10, Crispld2, Zdhhc7, 6430548M08Rik, 1700120B06Rik
Downstream geneCox4i1, Irf8, LOC100042333, Foxf1a, Mthfsd, Foxc2, Foxl1, 1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089M10.bB6Ng01-089M10.g
ACCDH902266DH902267
length1,1561,017
definitionDH902266|Mus musculus domesticus DNA, BAC clone: B6Ng01-089M10, 5' end.DH902267|Mus musculus domesticus DNA, BAC clone: B6Ng01-089M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,001,811 - 123,002,954)(123,178,636 - 123,179,659)
sequence
gaattcactatgaagaggaggctgggattaaaggcaccaccaccactagg
ctaaattttgtaattattgttttaaaacatataaagccaggggtggattg
catgcttttaatcctggcactcaggtgacagagactggtggacctctgtg
agttcaagactagcctggtctgcatggtgagtttcaggacagccagagct
acatagtgagaccctgtctcaaacaaacaaattatatgtatatctgttta
aggtgggtatgtgcgccggagtcagaaccctcagagaccagaagagcatc
agaccccttggaactggagttatacacagctgtgagccacccaccctggg
tgctgggaactgaactcatggcccccagaagaacccttagctgctgagcc
atccctctagtccttgaggaattaaaaaaacagccagccaaccaaccaac
caacgaaccaaacaaaaagcaattcaaaatgcaagacataggccctttta
ttattgttcttttttaagttacatactctttatttccttgcttgagtttg
cttgagacagggtctagcctaggactcaccatgtagtcaaagatggtctc
aaagggcagtaatctgatgattagcctccagagtgctggaattgcaggtg
aatttttcccccaacaggcctccgtaggctggccttgaactcggtaggta
gccacgaatgtccctgagctgctaatcctcctctagctcccaaagttccg
gcattacacgtatgcacctctatctgcagcctgtttctgtagtagaaaat
ggagccccgggcttcacatgcgcgctaggcaagcgctctattagcagggc
taacttttcagcttttcttaactgctacattgttgtttagacagggtctt
gcttgctatgtcgtctaggttcagagtctgctcagtaactcatccgctgc
ctctgtttttgcttccgctttatacacctttagtgtacaaggcaagggcc
gaggtaccagggagcggccacctctacgcagccaggccaggggtgcaggg
agtgtgggaaaccccacactgtgagacccacaagcccaagaagagtgagc
ttacacagggaaaggcccaacccccccctctctctgtcgtgcttcttatg
tcagaa
gaattccaggacagccggggctatacagagaaaccctgtctcgaaaaaac
cgggaaaaaaaaaaaccatttaatgaattttccacttaatttttgttttg
tagccttggctggtctagaacttggtgtgtagaccaggcctcctgggcct
gggattcaagcagcttttcacttctaggattgcctttcatgatgggggct
agagagccggctcagcggttgagagagcttgctgctcttgcaaggtcaaa
ttcctgactccaacatgacagctcacaactgtctgaacccttcactggta
ccaggcaccatggggtgcacagagagatacatgcaggcaaaaacacccat
acacgaagaataaatccaagactttttttttttaattgcctttaagaatt
aaggctactaagccaggcttggtgatacttgcctttcatctcggcactct
agaagcagggagatgttgttcagttcggcttggtctacacagttccagga
cagctggggttatatagagagactctgctgataagtaaatatttaaggat
actagccaagcatggtggcatataccaatgatcctagcgctcaggctgag
acagtagaattgccacaagtgtggccagcctgggctacattgagtcccaa
gacaacctgaggctagaatgaggacctgtctcaaaacaacaggaaataat
accaaaggatactaatatggtaagacaggcaacagcctcttcgggaacca
agtggagagctgcttaggagaagctgattttgctaatttgtgtggggtac
ttaggggtgtgtggggtgctgacagcctaagtgtgtgtgcctggtgcccg
tggattagaaagcagcttggaagtcctgggaagtctgtacggccagcagg
atggcccagcagatgagcatcttaagacccacatgtgagatggcaaggtc
ctccacacgtgccctgggacgcacggtgataataaatgttatttttgaaa
gcctccgtataatcaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_123001811_123002954
seq2: B6Ng01-089M10.b_45_1200

seq1  GAATTCACTATGAAGAGGAGGCTGGGATTAAAGGCACCACCACCACTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGAAGAGGAGGCTGGGATTAAAGGCACCACCACCACTAGG  50

seq1  CTAAATTTTGTAATTATTGTTTTAAAACATATAAAGCCAGGGGTGGATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTTTGTAATTATTGTTTTAAAACATATAAAGCCAGGGGTGGATTG  100

seq1  CATGCTTTTAATCCTGGCACTCAGGTGACAGAGACTGGTGGACCTCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTTTAATCCTGGCACTCAGGTGACAGAGACTGGTGGACCTCTGTG  150

seq1  AGTTCAAGACTAGCCTGGTCTGCATGGTGAGTTTCAGGACAGCCAGAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAGACTAGCCTGGTCTGCATGGTGAGTTTCAGGACAGCCAGAGCT  200

seq1  ACATAGTGAGACCCTGTCTCAAACAAACAAATTATATGTATATCTGTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTGAGACCCTGTCTCAAACAAACAAATTATATGTATATCTGTTTA  250

seq1  AGGTGGGTATGTGCGCCGGAGTCAGAACCCTCAGAGACCAGAAGAGCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGTATGTGCGCCGGAGTCAGAACCCTCAGAGACCAGAAGAGCATC  300

seq1  AGACCCCTTGGAACTGGAGTTATACACAGCTGTGAGCCACCCACCCTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCTTGGAACTGGAGTTATACACAGCTGTGAGCCACCCACCCTGGG  350

seq1  TGCTGGGAACTGAACTCATGGCCCCCAGAAGAACCCTTAGCTGCTGAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGAACTGAACTCATGGCCCCCAGAAGAACCCTTAGCTGCTGAGCC  400

seq1  ATCCCTCTAGTCCTTGAGGAATTAAAAAAACAGCCAGCCAACCAACCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCTAGTCCTTGAGGAATTAAAAAAACAGCCAGCCAACCAACCAAC  450

seq1  CAACGAACCAAACAAAAAGCAATTCAAAATGCAAGACATAGGCCCTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGAACCAAACAAAAAGCAATTCAAAATGCAAGACATAGGCCCTTTTA  500

seq1  TTATTGTTCTTTTTTAAGTTACATACTCTTTATTTCCTTGCTTGAGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTCTTTTTTAAGTTACATACTCTTTATTTCCTTGCTTGAGTTTG  550

seq1  CTTGAGACAGGGTCTAGCCTAGGACTCACCATGTAGTCAAAGATGGTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGACAGGGTCTAGCCTAGGACTCACCATGTAGTCAAAGATGGTCTC  600

seq1  AAAGGGCAGTAATCTGATGATTAGCCTCCAGAGTGCTGGAATTGCAGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCAGTAATCTGATGATTAGCCTCCAGAGTGCTGGAATTGCAGGTG  650

seq1  AATTTTTCCCCCAACAGGCCTCCGTAGGCTGGCCTTGAACTCGGTAGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCCCCCAACAGGCCTCCGTAGGCTGGCCTTGAACTCGGTAGGTA  700

seq1  GCCACGAATGTCCCTGAGCTGCTAATCCTCCTCTAGCTCCC-AAGTTCCG  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCCACGAATGTCCCTGAGCTGCTAATCCTCCTCTAGCTCCCAAAGTTCCG  750

seq1  GCATTACACGTATGCACCTCTATCTGCAGCCTGTTTCTGTAGTAG-AAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCATTACACGTATGCACCTCTATCTGCAGCCTGTTTCTGTAGTAGAAAAT  800

seq1  GGAGCCCCGGGCTTCACATGCGCGCTAGGCAAGCGCTCTATTAGCAGGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCCCGGGCTTCACATGCGCGCTAGGCAAGCGCTCTATTAGCAGGGC  850

seq1  TAACTTTCCAGCTTTTCTTAACTGCTACATTGTTGTTTAGACAGGGTCTT  898
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTTCAGCTTTTCTTAACTGCTACATTGTTGTTTAGACAGGGTCTT  900

seq1  GCTTGCTATGTCGTCTAGGTTCAGAGTCTGCTCAGTAACTCCATCCGCTG  948
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCTTGCTATGTCGTCTAGGTTCAGAGTCTGCTCAGTAACT-CATCCGCTG  949

seq1  CCTCTGTTTCTGCTTCCGCTTTATAACACCTTTAGTGTACAAGGC-AGGG  997
      ||||||||| |||||||||||||| |||||||||||||||||||| ||||
seq2  CCTCTGTTTTTGCTTCCGCTTTAT-ACACCTTTAGTGTACAAGGCAAGGG  998

seq1  CCGAGGTACAGGGAAGCGGCCACCTC-ACGCAGCAGGGCCA-GGGTGCAG  1045
      |||||||||  || |||||||||||| |||||||  ||||| ||||||||
seq2  CCGAGGTACCAGGGAGCGGCCACCTCTACGCAGCCAGGCCAGGGGTGCAG  1048

seq1  GGAGTG-GGGAAA-CCCACAC--TGAGACCCACAAGCAAAGGAGAAGTGA  1091
      |||||| |||||| |||||||  ||||||||||||||  | ||  |||||
seq2  GGAGTGTGGGAAACCCCACACTGTGAGACCCACAAGCCCAAGAAGAGTGA  1098

seq1  GC-TACACAGGGAA--GGCCAACCCTCTTCT---TCTGTC-TGCTTCTTA  1134
      || |||||||||||  | ||||||| |  ||   |||||| |||||||| 
seq2  GCTTACACAGGGAAAGGCCCAACCCCCCCCTCTCTCTGTCGTGCTTCTT-  1147

seq1  AATGTCAGAA  1144
       |||||||||
seq2  -ATGTCAGAA  1156

seq1: chr8_123178636_123179659
seq2: B6Ng01-089M10.g_68_1084 (reverse)

seq1  GTTGATTATACAGAGGCTTTCAAAAATAACATTTATTTATCAACCGTGCG  50
      ||||||||||| ||||||||||||||||||||||| ||||| ||||||||
seq2  GTTGATTATACGGAGGCTTTCAAAAATAACATTTA-TTATC-ACCGTGCG  48

seq1  TCACAGTGCACGTGTGGAGGACCTGTGCACTCTCACATGTGGGTCTTAAG  100
      || ||| ||||||||||||||||| |||  ||||||||||||||||||||
seq2  TCCCAGGGCACGTGTGGAGGACCT-TGCCATCTCACATGTGGGTCTTAAG  97

seq1  GTGGCTTCATCTGCTGGGCCATCCTGCTGGCCGTACAGACTTTCCCAGGA  150
       ||   |||||||||||||||||||||||||||||||||| |||||||||
seq2  ATG--CTCATCTGCTGGGCCATCCTGCTGGCCGTACAGAC-TTCCCAGGA  144

seq1  CTTCCAAGCTGCTTTCTAATCCACGGGCACCAGGCACACACACTTAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAGCTGCTTTCTAATCCACGGGCACCAGGCACACACACTTAGGCT  194

seq1  GGTCAGCACCCCACACACCCCTAAGTACCCCACACAAATTAGCAAAATCA  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GTCAGCACCCCACACACCCCTAAGTACCCCACACAAATTAGCAAAATCA  243

seq1  GCTTCTCCTAAGCAGCTCTCCACTTGGTTCCCGAAGAGGCTGTTGCCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCCTAAGCAGCTCTCCACTTGGTTCCCGAAGAGGCTGTTGCCTGT  293

seq1  CTTACCATATTAGTATCCTTTGGTATTATTTCCTGTTGTTTTGAGACAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCATATTAGTATCCTTTGGTATTATTTCCTGTTGTTTTGAGACAGG  343

seq1  TCCTCATTCTAGCCTCAGGTTGTCTTGGGACTCAATGTAGCCCAGGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATTCTAGCCTCAGGTTGTCTTGGGACTCAATGTAGCCCAGGCTGG  393

seq1  CCACACTTGTGGCAATTCTACTGTCTCAGCCTGAGCGCTAGGATCATTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTTGTGGCAATTCTACTGTCTCAGCCTGAGCGCTAGGATCATTGG  443

seq1  TATATGCCACCATGCTTGGCTAGTATCCTTAAATATTTACTTATCAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCCACCATGCTTGGCTAGTATCCTTAAATATTTACTTATCAGCAG  493

seq1  AGTCTCTCTATATAACCCCAGCTGTCCTGGAACTGTGTAGACCAAGCCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTCTATATAACCCCAGCTGTCCTGGAACTGTGTAGACCAAGCCGA  543

seq1  ACTGAACAACATCTCCCTGCTTCTAGAGTGCCGAGATGAAAGGCAAGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACAACATCTCCCTGCTTCTAGAGTGCCGAGATGAAAGGCAAGTAT  593

seq1  CACCAAGCCTGGCTTAGTAGCCTTAATTCTTAAAGGCAATTAAAAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGCCTGGCTTAGTAGCCTTAATTCTTAAAGGCAATTAAAAAAAAA  643

seq1  AAGTCTTGGATTTATTCTTCGTGTATGGGTGTTTTTGCCTGCATGTATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTGGATTTATTCTTCGTGTATGGGTGTTTTTGCCTGCATGTATCT  693

seq1  CTCTGTGCACCCCATGGTGCCTGGTACCAGTGAAGGGTTCAGACAGTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGCACCCCATGGTGCCTGGTACCAGTGAAGGGTTCAGACAGTTGT  743

seq1  GAGCTGTCATGTTGGAGTCAGGAATTTGACCTTGCAAGAGCAGCAAGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTCATGTTGGAGTCAGGAATTTGACCTTGCAAGAGCAGCAAGCTC  793

seq1  TCTCAACCGCTGAGCCGGCTCTCTAGCCCCCATCATGAAAGGCAATCCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACCGCTGAGCCGGCTCTCTAGCCCCCATCATGAAAGGCAATCCTA  843

seq1  GAAGTGAAAAGCTGCTTGAATCCCAGGCCCAGGAGGCCTGGTCTACACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAAAAGCTGCTTGAATCCCAGGCCCAGGAGGCCTGGTCTACACAC  893

seq1  CAAGTTCTAGACCAGCCAAGGCTACAAAACAAAAATTAAGTGGAAAATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCTAGACCAGCCAAGGCTACAAAACAAAAATTAAGTGGAAAATTC  943

seq1  ATTAAATGGTTTTTTTTTTTCCCGGTTTTTTCGAGACAGGGTTTCTCTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGGTTTTTTTTTTTCCCGGTTTTTTCGAGACAGGGTTTCTCTGT  993

seq1  ATAGCCCCGGCTGTCCTGGAATTC  1024
      ||||||||||||||||||||||||
seq2  ATAGCCCCGGCTGTCCTGGAATTC  1017