BAC Information

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BAC

Clone NameB6Ng01-093E13
Chromosome8 (Build37)
Map Location 87,501,067 - 87,502,010
singlet/doubletsinglet
Overlap geneJunb
Upstream genePrkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2
Downstream geneHook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2, Neto2, Itfg1, LOC100040798, Phkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093E13.bB6Ng01-093E13.g
ACCDH904814DH904815
length1,128936
definitionDH904814|Mus musculus domesticus DNA, BAC clone: B6Ng01-093E13, 5' end.DH904815|Mus musculus domesticus DNA, BAC clone: B6Ng01-093E13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtgccccatttttaatagggttatttagttt
tctggaatccaacttcttgagttctttatgtatattggatattagccccc
tatcagatttagggttagtaaagatcttttcccaatctgttggttgatgt
tttgtcatattgactgtgtcctttgccttacagaagttttgcaattttat
gaggtcccatgtgtcaattcttgatcttacagcacaagccattgctgttc
tgttcaggaatttttcccctgtgctcatatcttcgaggctctcccccact
ttctcctctataagtttcatagtttctggtttcatgtggagttccttgat
ccacttagactcgagctttgtacaaggagataagaatggatcaatttgca
ttcttctgcttgctaaccaccagttgaaccagcaccatttgttgaaaatg
ctgtcttctttccactggatggttttagctcctttgtcaaagatcaagtg
accataagtgtggggttcatttctgggtcttcaattatattccgttgatc
tacctgtctgtcactgtaccagtaccatgcagtttttattacaattgctc
tgtagtatggcttgaggtcagggatggtgattccaccagaggttctttta
ttgttgagaatagttttgctatcctaggtttttttgttattccaaatgaa
tttgcaaattgtcctttttcagaccaatttcccttatgaatatcgatgca
aaaatactcaataaaattctcgcaaaccaaatcccagaacacatcaaacc
aatcatccatcatgatcagtagcttcattgaaccatcaagtaggggatgg
ttcaatatacagaaatccatcaacgtaatccactatattaacaactcaaa
gacaaaaccacatgaccatcctcattagatgcagaaaagctttggcaaaa
tccaacacctattcatgataaagattggaaagacatgaattcagactcat
tctaaacatattaaagccatttaaagtgttctttctattctgcactatct
tctgatccaaaacattgggaagggaaggttatttgggttaactctcttac
tgctgtatctcccaaggagtcaaaacgg
gaattcagtctctttgcagaaaaaaaaaacatacaaaatacgctggaagg
gggccatgtaaacctcgaggtggaaggactgggcgcaggcgggcgggccg
gagtccagtgtgtgagctgcgccccaggccttttggcgggtgcccatcgc
ctgcccccctcaccccagtggggggcaggcgcccagccttcaaggctggg
ggtgtccgtatggggcaagggaggctctcagaaggcgtgtcccttgaccc
ctagcagcaactggcagccgttgctgacatgggtcatgaccttctgcttg
agctgcgccacttgctcccgtaggagaccggcagcactcgacagccccgc
gttctcagccttgagtgtcttcaccttgtcctccaggcgcgcgatgcgct
ccagcttccgcttccggcacttggtggccgccagcctgttccgcagccgc
tttcgctccactttgatgcgctcctggtcttccatgttgatgggggacac
aggcggcgtggcgtcgcggctgcgtgcctccggtacggtctgcggttcct
ctttaaaggcggaagcgccgcgactcaagcccagctgtgccgggtggccg
cccgcaaagggtggtgcatgtgggaggtagctgatggtggccgtcgggta
tgagctcccagtcccgacggcggtcccggagcctccagagggtgcagagg
ctggggagtaactgctgaggttggtgtagacgggaggcggctcccggacc
agcatagacgccccctgggccggcctggggaccccgctggcgcccaggga
cacgttggggggcgtcacgtggttcatcttgtgcagtcgtccaggctttt
acaaaccgtccgcaagccttctgctccttggtgacgccgccccctgtacc
tccacgctgccaccccacctgggtaaaatactgtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_87501067_87502010
seq2: B6Ng01-093E13.g_66_1001

seq1  GAATTCAGTCTCTTTGCAGAAAAAAAAAACATACAAAATACGCTGGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTCTTTGCAGAAAAAAAAAACATACAAAATACGCTGGAAGG  50

seq1  GGGCCATGTAAACCTCGAGGTGGAAGGACTGGGCGCAGGCGGGCGGGCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCATGTAAACCTCGAGGTGGAAGGACTGGGCGCAGGCGGGCGGGCCG  100

seq1  GAGTCCAGTGTGTGAGCTGCGCCCCAGGCCTTTTGGCGGGTGCCCATCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCAGTGTGTGAGCTGCGCCCCAGGCCTTTTGGCGGGTGCCCATCGC  150

seq1  CTGCCCCCCTCACCCCAGTGGGGGGCAGGCGCCCAGCCTTCAAGGCTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCCCTCACCCCAGTGGGGGGCAGGCGCCCAGCCTTCAAGGCTGGG  200

seq1  GGTGTCCGTATGGGGCAAGGGAGGCTCTCAGAAGGCGTGTCCCTTGACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCGTATGGGGCAAGGGAGGCTCTCAGAAGGCGTGTCCCTTGACCC  250

seq1  CTAGCAGCAACTGGCAGCCGTTGCTGACATGGGTCATGACCTTCTGCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGCAACTGGCAGCCGTTGCTGACATGGGTCATGACCTTCTGCTTG  300

seq1  AGCTGCGCCACTTGCTCCCGTAGGAGACCGGCAGCACTCGACAGCCCCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCGCCACTTGCTCCCGTAGGAGACCGGCAGCACTCGACAGCCCCGC  350

seq1  GTTCTCAGCCTTGAGTGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAGCCTTGAGTGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCT  400

seq1  CCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGCCTGTTCCGCAGCCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGCCTGTTCCGCAGCCGC  450

seq1  TTTCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGGGACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGGGACAC  500

seq1  AGGCGGCGTGGCGTCGCGGCTGCGTGCCTCCGGTACGGTCTGCGGTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGCGTGGCGTCGCGGCTGCGTGCCTCCGGTACGGTCTGCGGTTCCT  550

seq1  CTTTAAAGGCGGAAGCGCCGCGACTCAAGCCCAGCTGTGCCGGGTGGCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGGCGGAAGCGCCGCGACTCAAGCCCAGCTGTGCCGGGTGGCCG  600

seq1  CCCGCAAAGGGTGGTGCATGTGGGAGGTAGCTGATGGTGGCCGTCGGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCAAAGGGTGGTGCATGTGGGAGGTAGCTGATGGTGGCCGTCGGGTA  650

seq1  TGAGCTCCCAGTCCCGACGGCGGTCCCGGAGCCTCCAGAGGGTGCAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCCCAGTCCCGACGGCGGTCCCGGAGCCTCCAGAGGGTGCAGAGG  700

seq1  CTGGGGAGTAACTGCTGAGGTTGGTGTAGACGGGAGGCGGCT-CCGGACC  749
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGGGGAGTAACTGCTGAGGTTGGTGTAGACGGGAGGCGGCTCCCGGACC  750

seq1  AGCATAGACGCCCCCTGGGCCGGCCTGGGGACCCCCGCTGGCGCCCAGGG  799
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGCATAGACGCCCCCTGGGCCGGCCTGGGGA-CCCCGCTGGCGCCCAGGG  799

seq1  ACACGTTGGGGGGCGTCACGTGGTTCATCTTGTGCAGGTCGTCCAGGGCT  849
      |||||||||||||||||||||||||||||||||||| |||||||| ||||
seq2  ACACGTTGGGGGGCGTCACGTGGTTCATCTTGTGCA-GTCGTCCA-GGCT  847

seq1  TTGACAAAACCGTCCGCAAAGCCCTCCTGCTCCTCGGTGACGCCGCCCCC  899
      || || |||||||||||||   ||| |||||||| |||||||||||||||
seq2  TTTAC-AAACCGTCCGCAA--GCCTTCTGCTCCTTGGTGACGCCGCCCCC  894

seq1  TGTACCTCCACCGCTGCCACCCCCACGGGGGTAAAAGTACTGTCC  944
      |||||||||| |||||||| ||||||  |||||||| ||||||||
seq2  TGTACCTCCA-CGCTGCCA-CCCCACCTGGGTAAAA-TACTGTCC  936